XLOC_033400 (mRNA) -

Overview


Name	XLOC_033400
Unique Name	XLOC_033400
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:446648..449290-
coding sequence from alignment at sc0000078_pilon:446648..449290-

mRNA from alignment at sc0000078_pilon:446648..449290-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_033400 ID=XLOC_033400|Name=XLOC_033400|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2643bp|location=Sequence derived from alignment at sc0000078_pilon:446648..449290- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGAAAGCACGTCTGATAACGAAGTCGAAGAAGAAGACCAAGAGGA
AGATGACCTCTCTTGGGAATTAGAATCCGATGAATTGGTTGAACTGATCA
TGAGTGATGATTCCCATTTTGAGGATATTCGTAAATTCATCAAAGAAAAT
GCTCCTTTTAATGTCAATTATTGTCACAATGGTTGGACACCATTACATTA
TGCAACAGTGAAAAACAAAATAGATGTTTGCAAATTACTTGTTGAACTTG
GTTCAGATGTAAATTTTATGGCTGTTGCTGTTCCTTGGACTTTTATAGAT
TATACTGATATTGGGCGATCTCCTTTCCAACTTTCATGTGGACGTGCTGT
TTCATTTGATACTTTCAAATTTTTACTTAACAATGGTGGGGAAGTAAACA
AGAGTTGGTGTGGAATAACACCCTTAATGTTTATTGGAAGAGAACCTGAA
CTAGAAGATGGCCTACATGATATCGAGACTCAAGAACAAAAATTACTATT
GCTTTTGGAACAGGGTGCAGACGCAAGTGCCCATGACATGTATGGGAAAA
ATGTTCTTCATCATTTTGACTTGTATTCTGAAGATGAAAATGAAGAAGAA
CTAGTTTTGGGGATGATTCAAAGTATTATCAATCAAAATCTTGACATAAT
TAATAGAAGAGATAGTTGGGGTTTTACACCACTTCGAACATCCACTGAAG
TTCTACGGCTTAGTCGTATAGAACTTCTTTTGAAGAATGGCGCAGATATC
CATCAATCACGGACACCAAGAGATGGTAGCACCATTATTCATGCTCTAAA
ACAAATCAATGAAGATGATGTGACTTCAAATTTTGATACACGTTTTGAAA
GTTGTCTACAAATACTTTTAAACACAGGAATAAGTATCAACACTGTCACG
TTCATGGGGAACAGTATTCTTCATGACATAACCTGTGGTACCCATTCAAA
GGACACAGTAAGAAAACTTTTAAAACATGGAGCAAACATCAATCAACAAA
ACGTGTTTGGTCATACACCATTACACGCCTGTTTGACTTATAAAGATCTT
CCTAAGAATGAAGATTACTTGAAAAATAGATTAGAAATAGTTGAGCTGCT
TTTTAATTCAGCAGCTGATGCTAATATAAGAACTGTGAATGGTATGACAC
CTTTAATGACTGCTGTTAGAGGAAACGTCTCAGAACATGTATCCCTCTTA
TTAAAACTACTTACTGGTGAATATGATTTGCTAGCAACTGATAAATTTGG
AAGGACAGCTCTTCACCACTGCATCATTAAAGCTAATGAGATAAAAGGAC
TTGTGGGTGCAATGAAAGGTTGGGGAATAGCAGATAACAAGGAAATCTTC
GAAATGCTCATAAAATCTCGCATTAAACCCAATTTAGAGGATTGTTTTGG
TAAAAAGGCTATATATTACACAAAGTTTTTAAGTGAGCATCAGAAAGAAT
TTTTTAAACAACATCTTGAAGAAGAAAATGATAAAGTAGAAACAGATGAA
TGGTTAAACTATCAAACAAGCAAAAACGTTCTAGGAAATTATTTTGATTT
AACTAAATCCAGCAATCCACATTCCAAAGAAAACGAGAAGGTTTTAAAAG
AATTGTTCGAAACAAAAGGAATAGGGTCAGTCCATGCACTGGAAGAAACC
TCGACTATTAACAAGGAAATTGAAGAATTGATGGGTGAGATTTGTCATTT
GATAAACAAAAAATGCAAGTATGGATATCAATACAGTCTTCTACTTTCAG
GAGGTGTAGGAGAAGGCACCAAAATTGGTTTCCCGGATGAATTCGATTAT
CTCCTTATGATTGAAGGTTTTCAAGATCATCTTACACCTGAGGATGTAAA
ACCAGGCTATGTCAAATTGAAATTGTCAGAGAAGAAGACAAACCCTTTTT
GCAGTGAAGGATGTTTTGATAGTGTCAAATTCACAAGTTATTTTTATGAA
TTAGTAAACAGTGCTCTTCAATCACCATTTATTGAGAACACTAGATTTTA
CTTATTTCCAAATGAAGGTGATTTCAACAATGAGCGCATAAAGAAAACCG
CAAACTTTTTAATCACAATGGAATACTATTCGAAAAATTTTGGAACAATA
GAACTTACAATTGATTTAGTTCCTGTTTTAAAATTAAAACATGGATGGTG
GCCTAGTTATTGCAGCAATCCAACCAAATTTCAAGAACATTTATGTGCAA
CTCTTACAAAGCCTGCGGGAACACTTCAAGGACAGAATCTTCATTTAAGA
ATATCAACATCATTGGTTGAATTGAGTGTTATCGAACGCTTACCAAATAC
TGTCAAAAGTGCATATACCATCCTGAAAGTTTTAAAGGATATTTGCAAAT
GCTCGGTCAATGAAATTGTTTACAGGGTTTCATTATATATAAATACGTAC
CTAATTAAGAATGCTTTAATGAAATATGCTATTGAAAATGAATATAACGA
ACTAGAAGCAGAGGAGGACGTAGTTGATCATGTTATAAACATTTTGAAAA
ACATAAGTGTCAATTCTTTTTTCTTTCCTGGAATGGACATTGAAAGACCA
ATTGAATTCGATGAAGAAACATATGACCATATGCACGATGTTGATTATAG
AAATACTATGATTGAAACTTTGATTAATTTTCTACGATCTTAA

Coding sequence (CDS) from alignment at sc0000078_pilon:446648..449290-

>XLOC_033400 ID=XLOC_033400|Name=XLOC_033400|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5286bp|location=Sequence derived from alignment at sc0000078_pilon:446648..449290- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGAAAGCACGTCTGATAACGAAGTCGAAGAAGAAGACCAAGAGGA
AGATGACCTCTCTTGGGAATTAGAATCCGATGAATTGGTTGAACTGATCA
TGAGTGATGATTCCCATTTTGAGGATATTCGTAAATTCATCAAAGAAAAT
GCTCCTTTTAATGTCAATTATTGTCACAATGGTTGGACACCATTACATTA
TGCAACAGTGAAAAACAAAATAGATGTTTGCAAATTACTTGTTGAACTTG
GTTCAGATGTAAATTTTATGGCTGTTGCTGTTCCTTGGACTTTTATAGAT
TATACTGATATTGGGCGATCTCCTTTCCAACTTTCATGTGGACGTGCTGT
TTCATTTGATACTTTCAAATTTTTACTTAACAATGGTGGGGAAGTAAACA
AGAGTTGGTGTGGAATAACACCCTTAATGTTTATTGGAAGAGAACCTGAA
CTAGAAGATGGCCTACATGATATCGAGACTCAAGAACAAAAATTACTATT
GCTTTTGGAACAGGGTGCAGACGCAAGTGCCCATGACATGTATGGGAAAA
ATGTTCTTCATCATTTTGACTTGTATTCTGAAGATGAAAATGAAGAAGAA
CTAGTTTTGGGGATGATTCAAAGTATTATCAATCAAAATCTTGACATAAT
TAATAGAAGAGATAGTTGGGGTTTTACACCACTTCGAACATCCACTGAAG
TTCTACGGCTTAGTCGTATAGAACTTCTTTTGAAGAATGGCGCAGATATC
CATCAATCACGGACACCAAGAGATGGTAGCACCATTATTCATGCTCTAAA
ACAAATCAATGAAGATGATGTGACTTCAAATTTTGATACACGTTTTGAAA
GTTGTCTACAAATACTTTTAAACACAGGAATAAGTATCAACACTGTCACG
TTCATGGGGAACAGTATTCTTCATGACATAACCTGTGGTACCCATTCAAA
GGACACAGTAAGAAAACTTTTAAAACATGGAGCAAACATCAATCAACAAA
ACGTGTTTGGTCATACACCATTACACGCCTGTTTGACTTATAAAGATCTT
CCTAAGAATGAAGATTACTTGAAAAATAGATTAGAAATAGTTGAGCTGCT
TTTTAATTCAGCAGCTGATGCTAATATAAGAACTGTGAATGGTATGACAC
CTTTAATGACTGCTGTTAGAGGAAACGTCTCAGAACATGTATCCCTCTTA
TTAAAACTACTTACTGGTGAATATGATTTGCTAGCAACTGATAAATTTGG
AAGGACAGCTCTTCACCACTGCATCATTAAAGCTAATGAGATAAAAGGAC
TTGTGGGTGCAATGAAAGGTTGGGGAATAGCAGATAACAAGGAAATCTTC
GAAATGCTCATAAAATCTCGCATTAAACCCAATTTAGAGGATTGTTTTGG
TAAAAAGGCTATATATTACACAAAGTTTTTAAGTGAGCATCAGAAAGAAT
TTTTTAAACAACATCTTGAAGAAGAAAATGATAAAGTAGAAACAGATGAA
TGGTTAAACTATCAAACAAGCAAAAACGTTCTAGGAAATTATTTTGATTT
AACTAAATCCAGCAATCCACATTCCAAAGAAAACGAGAAGGTTTTAAAAG
AATTGTTCGAAACAAAAGGAATAGGGTCAGTCCATGCACTGGAAGAAACC
TCGACTATTAACAAGGAAATTGAAGAATTGATGGGTGAGATTTGTCATTT
GATAAACAAAAAATGCAAGTATGGATATCAATACAGTCTTCTACTTTCAG
GAGGTGTAGGAGAAGGCACCAAAATTGGTTTCCCGGATGAATTCGATTAT
CTCCTTATGATTGAAGGTTTTCAAGATCATCTTACACCTGAGGATGTAAA
ACCAGGCTATGTCAAATTGAAATTGTCAGAGAAGAAGACAAACCCTTTTT
GCAGTGAAGGATGTTTTGATAGTGTCAAATTCACAAGTTATTTTTATGAA
TTAGTAAACAGTGCTCTTCAATCACCATTTATTGAGAACACTAGATTTTA
CTTATTTCCAAATGAAGGTGATTTCAACAATGAGCGCATAAAGAAAACCG
CAAACTTTTTAATCACAATGGAATACTATTCGAAAAATTTTGGAACAATA
GAACTTACAATTGATTTAGTTCCTGTTTTAAAATTAAAACATGGATGGTG
GCCTAGTTATTGCAGCAATCCAACCAAATTTCAAGAACATTTATGTGCAA
CTCTTACAAAGCCTGCGGGAACACTTCAAGGACAGAATCTTCATTTAAGA
ATATCAACATCATTGGTTGAATTGAGTGTTATCGAACGCTTACCAAATAC
TGTCAAAAGTGCATATACCATCCTGAAAGTTTTAAAGGATATTTGCAAAT
GCTCGGTCAATGAAATTGTTTACAGGGTTTCATTATATATAAATACGTAC
CTAATTAAGAATGCTTTAATGAAATATGCTATTGAAAATGAATATAACGA
ACTAGAAGCAGAGGAGGACGTAGTTGATCATGTTATAAACATTTTGAAAA
ACATAAGTGTCAATTCTTTTTTCTTTCCTGGAATGGACATTGAAAGACCA
ATTGAATTCGATGAAGAAACATATGACCATATGCACGATGTTGATTATAG
AAATACTATGATTGAAACTTTGATTAATTTTCTACGATCTTAAATGAATG
AAAGCACGTCTGATAACGAAGTCGAAGAAGAAGACCAAGAGGAAGATGAC
CTCTCTTGGGAATTAGAATCCGATGAATTGGTTGAACTGATCATGAGTGA
TGATTCCCATTTTGAGGATATTCGTAAATTCATCAAAGAAAATGCTCCTT
TTAATGTCAATTATTGTCACAATGGTTGGACACCATTACATTATGCAACA
GTGAAAAACAAAATAGATGTTTGCAAATTACTTGTTGAACTTGGTTCAGA
TGTAAATTTTATGGCTGTTGCTGTTCCTTGGACTTTTATAGATTATACTG
ATATTGGGCGATCTCCTTTCCAACTTTCATGTGGACGTGCTGTTTCATTT
GATACTTTCAAATTTTTACTTAACAATGGTGGGGAAGTAAACAAGAGTTG
GTGTGGAATAACACCCTTAATGTTTATTGGAAGAGAACCTGAACTAGAAG
ATGGCCTACATGATATCGAGACTCAAGAACAAAAATTACTATTGCTTTTG
GAACAGGGTGCAGACGCAAGTGCCCATGACATGTATGGGAAAAATGTTCT
TCATCATTTTGACTTGTATTCTGAAGATGAAAATGAAGAAGAACTAGTTT
TGGGGATGATTCAAAGTATTATCAATCAAAATCTTGACATAATTAATAGA
AGAGATAGTTGGGGTTTTACACCACTTCGAACATCCACTGAAGTTCTACG
GCTTAGTCGTATAGAACTTCTTTTGAAGAATGGCGCAGATATCCATCAAT
CACGGACACCAAGAGATGGTAGCACCATTATTCATGCTCTAAAACAAATC
AATGAAGATGATGTGACTTCAAATTTTGATACACGTTTTGAAAGTTGTCT
ACAAATACTTTTAAACACAGGAATAAGTATCAACACTGTCACGTTCATGG
GGAACAGTATTCTTCATGACATAACCTGTGGTACCCATTCAAAGGACACA
GTAAGAAAACTTTTAAAACATGGAGCAAACATCAATCAACAAAACGTGTT
TGGTCATACACCATTACACGCCTGTTTGACTTATAAAGATCTTCCTAAGA
ATGAAGATTACTTGAAAAATAGATTAGAAATAGTTGAGCTGCTTTTTAAT
TCAGCAGCTGATGCTAATATAAGAACTGTGAATGGTATGACACCTTTAAT
GACTGCTGTTAGAGGAAACGTCTCAGAACATGTATCCCTCTTATTAAAAC
TACTTACTGGTGAATATGATTTGCTAGCAACTGATAAATTTGGAAGGACA
GCTCTTCACCACTGCATCATTAAAGCTAATGAGATAAAAGGACTTGTGGG
TGCAATGAAAGGTTGGGGAATAGCAGATAACAAGGAAATCTTCGAAATGC
TCATAAAATCTCGCATTAAACCCAATTTAGAGGATTGTTTTGGTAAAAAG
GCTATATATTACACAAAGTTTTTAAGTGAGCATCAGAAAGAATTTTTTAA
ACAACATCTTGAAGAAGAAAATGATAAAGTAGAAACAGATGAATGGTTAA
ACTATCAAACAAGCAAAAACGTTCTAGGAAATTATTTTGATTTAACTAAA
TCCAGCAATCCACATTCCAAAGAAAACGAGAAGGTTTTAAAAGAATTGTT
CGAAACAAAAGGAATAGGGTCAGTCCATGCACTGGAAGAAACCTCGACTA
TTAACAAGGAAATTGAAGAATTGATGGGTGAGATTTGTCATTTGATAAAC
AAAAAATGCAAGTATGGATATCAATACAGTCTTCTACTTTCAGGAGGTGT
AGGAGAAGGCACCAAAATTGGTTTCCCGGATGAATTCGATTATCTCCTTA
TGATTGAAGGTTTTCAAGATCATCTTACACCTGAGGATGTAAAACCAGGC
TATGTCAAATTGAAATTGTCAGAGAAGAAGACAAACCCTTTTTGCAGTGA
AGGATGTTTTGATAGTGTCAAATTCACAAGTTATTTTTATGAATTAGTAA
ACAGTGCTCTTCAATCACCATTTATTGAGAACACTAGATTTTACTTATTT
CCAAATGAAGGTGATTTCAACAATGAGCGCATAAAGAAAACCGCAAACTT
TTTAATCACAATGGAATACTATTCGAAAAATTTTGGAACAATAGAACTTA
CAATTGATTTAGTTCCTGTTTTAAAATTAAAACATGGATGGTGGCCTAGT
TATTGCAGCAATCCAACCAAATTTCAAGAACATTTATGTGCAACTCTTAC
AAAGCCTGCGGGAACACTTCAAGGACAGAATCTTCATTTAAGAATATCAA
CATCATTGGTTGAATTGAGTGTTATCGAACGCTTACCAAATACTGTCAAA
AGTGCATATACCATCCTGAAAGTTTTAAAGGATATTTGCAAATGCTCGGT
CAATGAAATTGTTTACAGGGTTTCATTATATATAAATACGTACCTAATTA
AGAATGCTTTAATGAAATATGCTATTGAAAATGAATATAACGAACTAGAA
GCAGAGGAGGACGTAGTTGATCATGTTATAAACATTTTGAAAAACATAAG
TGTCAATTCTTTTTTCTTTCCTGGAATGGACATTGAAAGACCAATTGAAT
TCGATGAAGAAACATATGACCATATGCACGATGTTGATTATAGAAATACT
ATGATTGAAACTTTGATTAATTTTCTACGATCTTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_033400	XLOC_033400-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078_pilon	genome	sc0000078_pilon:446648..449290 -

Properties


Property Name	Value
Aaloc	1-2643:2644

You are here

XLOC_033400 (mRNA) -