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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000078_pilon:892311..896769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_033396 ID=XLOC_033396|Name=XLOC_033396|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4459bp|location=Sequence derived from alignment at sc0000078_pilon:892311..896769- (Clytia hemisphaerica_ch_hm2_pilon)
AGAGAAACGAACCCAAGAAATCCACACCAGGAAAAAGAAACACTAGAGGA
CGGTAACACCACAAACGCAACAATGGCAAATAAGATGACGGTTGATGAAA
TTAATCAATGGGTTATGATAGGGCCAGGTATATAAATCTGAGCTTAATAG
ATGAGGAGAATTAAAAAATGAAATGTCAATTTGTATAAAACCTTTTAAAC
ATTTTTTACAATGATACCCTTAGCCTCACATTGTACATAATCTGTTGAAC
TTTCTGACTTTAAGGTTTTTACTTATCCTTCATTATAGAAAATTTGTTTA
TCAATGATGAAGATTTGTCTTTACATAAACTACCTCATCCTCAAAATGGT
AAGCTCTGGTCTTGTCGTTTGCTGTTTGTCGTTCATAGGGTACATGTAAG
ATTATTGAAATTTATCCTTTTTAAAAATGATTAACTCCATTAATAATAAT
AAGAATTATAATAAGTGAATAAAAAATTTACAAACCTTACAATCTAAAGG
TTGTGGGTTCGATCCCTGGTCACCACCAACTCAGCGAATGAGTAGCTTAG
ATTGGGTAAACTGATCTAGGCGGTAAGTTACTGGGAGCTGAGAGTAGGTG
TGGTGCTCCACCTCAGCATTCGATCTCTCAGGTCTAGTGCAAATAGAAAA
GAGGATAGACTCCCTCACTCCCGGCTCCACCGACAGCCACCAGATGAATA
TACTTACTTTTTTTTTACTTTTTACTATCGATCAATTTTCAAATTTCGAG
TGACATTGAAGCTACTATAATTTAATTTACTGTAAAAGCCAAGTGATGGT
TACATGAATAAATCTTCCAGAAAAACTCTTCATAGCTGGTGTACGATATA
TATTGTCCAGTGCTAACGTACAATGTAAGTAATGTGGGTTTGATGGGTTT
TTTCCAAGAGTTGAACACATGTCCAGGGAGTGAGGTCAATCGAAATCACA
CTCTTGTGTTCTTTAATTGTAAATGATCAACAAAATGGGGGAATTTAAAA
AAGAATGCAAACTCCACTCCCCCCCCCCATCAACGTTTTTCTTCTGGCAG
TGCCCATTCTACGTTTAACTGAAATAATTTATCACCTCTTTAGGTGTTGC
ATCTCTCTTTGCTTTCAAAAACAAACAAGTTTTTGAGTTGATGAAATATA
AGGATACTTATCGTTCATGGTTTATAAACCAAACTGTTCAGAAAGGTAAT
ATTTTACAATGATAAAATTTTTGTATGTCTGGTATAGAGTAGCACATCAA
TATCTGAATTTGACAAAAATATCAGAGAGTCTTGCAGTCAAGACTAGAAT
ACCTTACTAAAAGAAATTATCAGCGTCAGAAGAATATAATTTTGACTCTG
TTAGTTAATGACTATTAAGTGGGTAGTCTTTTAATCTCCAGTGTTTGAGC
ATGTTCATTCCCCCTTAAATTGAACTTTCTCCTTTTAATTGTTGCATATT
TTCTTTATAGATGGATCTTTTTGCATGTTGACCCCAATTGATCCTTTATT
TCTGGCTCTTCCTTTCATTGAGAAATCTTCAATCAAAGTAAGTTATATTG
TGGATGGTTTTAGTTTTCCTGCAAATTATAATAGTAATGATGTCAATAAA
TCCCAAATCTGGTTTTCTGGGATCATAAAGATTTATAGAGAAATTAATTT
TCAATTTTGAAGTTTTGGAACTGAGTGTTAAGTTCTTTCGTCTCAGCGAG
ATACAAAAAAAGGAATTTCCGTCTTCAAATTCTACCAAATTCTGTAAAAT
CTGAAGAATCTTGTTTAACTTTCCCATTTCCATCTGAGACAAAAACTTTA
GCTTTGACCAACTGTTTGGAAGTTGTTTTGGAATCTCTTGTCGACATAAT
TTTTTTCTTTTTTAACAACAATTATTTAGGGTCAATTCACAACATTGGAT
AATATCATGGTAGATACTGATCACACACCAGGTCTCCGACAATTAGAATG
TTGTTTAACTCATAATATGTTGTTGAACGTTTGCGATACTAAAGGTGCGG
ACGACATGATTGTTTATAAATCAAATCAGGAAAAAATCAAGAAATGGTTG
TCTAAAAAGGTATGTAAAATCATAAAAATACTAATACTACTGGCGTCAAA
GATATCTATGATTTTATTTTAAATTATTTTAAAGGGATTATCAAAAGATT
CGAGTCAAGCTACCAAGCTTTTTAGTCTAAGTATACCAATTTTGATATTT
ACTTTAAACTTAGCATATCTGCTTTCTGTTTATCTAATAAGTGCTTTACG
ACATTTTTTTCGACCTCAAGACGTTAAAAGACTATGTTCATACCAAAAAT
TGCAACATTGAGAGATTTAGATATCCTGATTACATACATCCATCTTACGA
AAAAGCAACGCATTCGTATAGAATGGCTTGAACGATGAGGTCACATAGTC
ATGTGTCACGAGGTTAACAACCTGACAGGATAAAATTTGAAAAAAAAAAA
TTTTCTTTAGATAACTACCATGGCAAAATATTTAGAATCTTCAAAAATCA
ATGTCAAGCAGGGAGCTCAAATCTCTGGATACAATCGAAGTTCTGAAGGA
CAGAATAATAAAGGTTTGGGCATTTTATTGTAATTTAATCTATGACTGTC
CAATAGGCTTTTGATAGAACGCAACGTTTGTCTAGAAGTAACTTTTGCTC
TTTTCTTGCCGTTTTTATTGAAATATTGGATTTAAAACTACACATCCAAC
CCGTGCCTTCATTGTATTAGACAACTATCGCAATCTACAAATCTTTATAA
GACCATCACATTCAGTTGCAATATTAAATGATTTTGTGTATTCTTTTCAG
AAAGCAGTTTACGTTATGCTTGGGAAATGGTTTCTGATTATATCACAGAA
GACAGATCTCTGCAGTTAAAAGAAAAGTTTGGGTAAAATGAACATTTTAG
CAACTAATTTTGATATTACTAAGTAACGCATACATTTTCCTTTTATTACA
CATTTTACTTTCAAAATGCATAATGCTTCTTCTCGGAAACACATTTTCCT
TCTTGAGAATAAAATTCCTTCAAAATCTAACGCAGCTAGAGATCTTACTG
TCTAAAGGGCAGGTACACGTTTTATTTTTAAATACAGATTTCCTTAGAAA
ATACAATTCTTTATCGTGCACTCTTTCAGGATAAAAGATCCGGTAAAGAC
TGTGAAGACTGAGGAGAAATTGGATCCTCCACAAGCCAAGGTAAAATATC
TTCTTGTTTTGTACACTCGAATCGTAATAATCCTTTTACTACAGTAGGGC
GTTGTATGATATTACGGTAAGTTCAGAGCGAATTTCAGTTTGTATCAGTC
TTCCAACTCTTCGCCTGTAGACGGAATCCGTCCAGTTTAGATGCAAATAT
ACCATTTTGTCTTGCCAGTAAGAGGGTTTTTGGTTCAAATGATTTAAGGT
TTCTGTCATAGTCTCAAAGCCTAAACTACAATTTCTCCCTTCTTTTGTTT
TTTTGTTTATTTAGTTACCACAGTTACCACTATGTCTTAGTTTGAAATCT
TCATTCCACGGGGGCGAACTACGTATTTTCAGATTATGAAATTCGTTTTC
CTTCCTGCCATTGATAGAAAGAATCACGTTAAATGGTCATTAATCAGACT
AAATTCAATAACTAAATTTTAGGGGCCTCTTTTACAAAAAAATGAGATTT
TGGCACTTTATAAATAACATTTTTCTCCACTACCTATCACAGGATTTCTG
TAATATAAAGAAGTATGTTTTAGAATTTCAAAATATTTAAAATTACATTT
TCATCTATCATTTTTAGAGACAAAAGTTGAATAATGACCCGGATGCTAAT
TGTTTGGAAGATTATCGAAATAAAGATGCACCGAAAAAGGTTTCTTTTTG
TTCTCGCAAACCTTAGGGGACTAATTTTCACGGTCGAAAAAAAACTCACT
TTCACGGTTTTGTCTTATTTTGGACACATTTCTTTCATTTTCTAAGAGAT
TTTTCAAATTTATTGATGAAAAATGGCCAAATTTGTAATTCGCGGGCTCT
TAAAAAAGCGAAGACTGTTGTGTTCCCCACGAAAATTAGTTCCCTTAAGG
TAGCTCCGGATTTAAATTCATATTTGCGACAAAGCGTTCGGCTGTGTTAA
CTGGAAAGTAATGCAGGTAATATCTGTTGATAGCTCGTAGATTTTGCAGT
AGTTTTCTTGTTGCAGAATCTCCTATGTAGGGTTTGAAGTCAGTTACTTC
CTGCGAAAGTTGCGCAAACACCGAATCGAAATTAAATTTACCGCAACGTC
TCAAAAGATAAACCTAATTTTCTTCTTTATCTACGGGCTTATAAATCCTT
ATCCATATTGAAGCGTTTATTGAAGAATTTCTTTACTATTTTCAGAAAGA
CACCGGTACAACAAAGTTATCAAGAGCTCAAAAACAATTGGATAAAGTTG
ATAAGAAGGGCATGAAAACGATGAGCAGTTTCTTTGCCGTTAAACCGAAG
AAAAAATGA Coding sequence (CDS) from alignment at sc0000078_pilon:892311..896769- >XLOC_033396 ID=XLOC_033396|Name=XLOC_033396|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000078_pilon:892311..896769- (Clytia hemisphaerica_ch_hm2_pilon)
AGAGAAACGAACCCAAGAAATCCACACCAGGAAAAAGAAACACTAGAGGA
CGGTAACACCACAAACGCAACAATGGCAAATAAGATGACGGTTGATGAAA
TTAATCAATGGGTTATGATAGGGCCAGAGAGAAACGAACCCAAGAAATCC
ACACCAGGAAAAAGAAACACTAGAGGACGGTAACACCACAAACGCAACAA
TGGCAAATAAGATGACGGTTGATGAAATTAATCAATGGGTTATGATAGGG
CCAGAAAATTTGTTTATCAATGATGAAGATTTGTCTTTACATAAACTACC
TCATCCTCAAAATGAAAATTTGTTTATCAATGATGAAGATTTGTCTTTAC
ATAAACTACCTCATCCTCAAAATGGTGTTGCATCTCTCTTTGCTTTCAAA
AACAAACAAGTTTTTGAGTTGATGAAATATAAGGATACTTATCGTTCATG
GTTTATAAACCAAACTGTTCAGAAAGGTGTTGCATCTCTCTTTGCTTTCA
AAAACAAACAAGTTTTTGAGTTGATGAAATATAAGGATACTTATCGTTCA
TGGTTTATAAACCAAACTGTTCAGAAAGATGGATCTTTTTGCATGTTGAC
CCCAATTGATCCTTTATTTCTGGCTCTTCCTTTCATTGAGAAATCTTCAA
TCAAAATGGATCTTTTTGCATGTTGACCCCAATTGATCCTTTATTTCTGG
CTCTTCCTTTCATTGAGAAATCTTCAATCAAAGGTCAATTCACAACATTG
GATAATATCATGGTAGATACTGATCACACACCAGGTCTCCGACAATTAGA
ATGTTGTTTAACTCATAATATGTTGTTGAACGTTTGCGATACTAAAGGTG
CGGACGACATGATTGTTTATAAATCAAATCAGGAAAAAATCAAGAAATGG
TTGTCTAAAAAGGGTCAATTCACAACATTGGATAATATCATGGTAGATAC
TGATCACACACCAGGTCTCCGACAATTAGAATGTTGTTTAACTCATAATA
TGTTGTTGAACGTTTGCGATACTAAAGGTGCGGACGACATGATTGTTTAT
AAATCAAATCAGGAAAAAATCAAGAAATGGTTGTCTAAAAAGATAACTAC
CATGGCAAAATATTTAGAATCTTCAAAAATCAATGTCAAGCAGGGAGCTC
AAATCTCTGGATACAATCGAAGTTCTGAAGGACAGAATAATAAAGATAAC
TACCATGGCAAAATATTTAGAATCTTCAAAAATCAATGTCAAGCAGGGAG
CTCAAATCTCTGGATACAATCGAAGTTCTGAAGGACAGAATAATAAAGAA
AGCAGTTTACGTTATGCTTGGGAAATGGTTTCTGATTATATCACAGAAGA
CAGATCTCTGCAGTTAAAAGAAAAGTTTGGAAAGCAGTTTACGTTATGCT
TGGGAAATGGTTTCTGATTATATCACAGAAGACAGATCTCTGCAGTTAAA
AGAAAAGTTTGGGATAAAAGATCCGGTAAAGACTGTGAAGACTGAGGAGA
AATTGGATCCTCCACAAGCCAAGGATAAAAGATCCGGTAAAGACTGTGAA
GACTGAGGAGAAATTGGATCCTCCACAAGCCAAGAGACAAAAGTTGAATA
ATGACCCGGATGCTAATTGTTTGGAAGATTATCGAAATAAAGATGCACCG
AAAAAGAGACAAAAGTTGAATAATGACCCGGATGCTAATTGTTTGGAAGA
TTATCGAAATAAAGATGCACCGAAAAAGAAAGACACCGGTACAACAAAGT
TATCAAGAGCTCAAAAACAATTGGATAAAGTTGATAAGAAGGGCATGAAA
ACGATGAGCAGTTTCTTTGCCGTTAAACCGAAGAAAAAATGAAAAGACAC
CGGTACAACAAAGTTATCAAGAGCTCAAAAACAATTGGATAAAGTTGATA
AGAAGGGCATGAAAACGATGAGCAGTTTCTTTGCCGTTAAACCGAAGAAA
AAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078_pilon | genome | sc0000078_pilon:892311..896769 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 886-999:115 |
| Aaloc | 814-885:693 |
| Aaloc | 754-813:1330 |
| Aaloc | 673-750:1658 |
| Aaloc | 568-669:2000 |
| Aaloc | 388-567:2581 |
| Aaloc | 313-387:2998 |
| Aaloc | 211-309:3365 |
| Aaloc | 151-207:4170 |
| Aaloc | 22-147:4460 |
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