MSTRG.15053.1.p2 (mRNA) -

Overview
NameMSTRG.15053.1.p2
Unique NameMSTRG.15053.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000130_pilon:447366..454807+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15053.1.p2 ID=MSTRG.15053.1.p2|Name=MSTRG.15053.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7442bp|location=Sequence derived from alignment at sc0000130_pilon:447366..454807+ (Clytia hemisphaerica_ch_hm2_pilon)
TCATTTTGgtCCTGTTTTTCCATATTTCGTGATTTTTACATGCACCCATA
AGGATGGAGGTTCAAGTCGCGGATGGCTAAAAGCACTAAACATCTGCAGA
CCCGTTCGAGGAATAATGCTGGGTGCCGAGcttgtctttttattttacag
GTATATTTTGATCAGTTTGTTATCCTTGGGGATTATTTGTCTGTATTCTC
TAAGTCTTACTATATATGGGTAACCTGTATTCAAATTCTTCAGCCCGGTT
TcccatcttcatttttagataaTTCCATGCCTTATGGTGGCTTTGTTAGG
GTTTGTTTAGTCAGAaagtctgccgtatactatcttcgctttctgatttg
aatgatagcGCTGCGATAGGTCTCTAtttttttccaccatcagattatca
aaggcaaaaaatagttgAGCTCCAGACCCTGGACTAGGGTTTGTTTAGGT
GGCTTGTCACTTGTGATGTGGCCACTTTTCTTCCGGATTCTTTGGCTTCT
GCTTTCACGCACAGCTAATCCAACTTCTTGAGCCTGATGGATGATATTTC
CTTGAGGCTGTCAATGTTAGCTTTCTTAAGAATGAACTACAGTTGTGGGC
AAGCAGTAGTGTGGGTTTGTCCACTGTCAACTGTGTGCTGCGTCAGGAGG
CGTGTACAGGCCATTCATTCAGAGAATTATGATTTCCATTTTCGCCTGTA
CAGTCTGTACCGTGAGATTAGGTATCTTGCATCAGTGGAAGCTAACATGC
ATAGTCCTCAAATGAACAGTGTGTCACAAACAGCTGCAAACAGCAATATT
TCGATCGCACGCAAGCGCTTCAAAACgggggtgggggggTGTGGatgaaa
agtacgtacttaccaggaggtatagccatttgcgtacgcttgcatACTGG
GGGGAGGGAGTCtccattttcaacattttagtgcgtacatACTATGTTGA
CAGCGCCTatagttagggaaaccatccagaaTCCTGCCATTTTAtttata
agccagcaaaaaacaaatgacacttgtaaacttaagtttcttatcatttt
ctattgaaaacaaccaaaaacattgctacttctcaaaacaaattatcttc
catgATTATGGCACCCTtgtggatctattgttaaggccatctaaaatggt
ggaaagagttgcggaaagacactGCACTCCACCGCAACGCACAACGAacg
gtgtttcagtgaatatcaataattataagaatatctgaTGTGCTTAACTT
CAGTAAACTTCCTgtgcttcattgaagatgaagaaggtaagaagatgaaa
aatgcgctggaataatttcattgtaacagtttggtcaatcattgttgaaa
atttgaaaaagtttttccgacgcaaaaaaaaaaaattcagccaattaaaa
gaaCATTGTGCTTaaacttactatgtttgctacattgtCTAGGCTAAAAG
AAAGTGAGAAAAGACACAAAcgccatttttttaaatgagtgttgttatta
tttttttgattgcagCCGTGTACAGGAACTTGCCAAATGCTCCTAACTGC
CCTATGCCAATTTCAACATTAAAGTGAAAACagggaaaaatgaagatgaa
tggggttttctttttttttctatacaAGATTCTTCATTCGTTAATAAAAG
AATGTTGCCAAAcaatatcatactccaggatgctcTGtctcttattttct
cccttttattttctattttcctagatcttcgattcgattttctgactttc
tcaactgtttctaactgtttttcaagtatttttctgaaatttaccCGTAC
TCCTagtttaatgggataaactctcctggggattaaatttcgcggatttg
ggtgtcatccgcgaaattaatcttttttcgatccacaaaaattttaattt
ctatcCTCGTTTTTTCGTCTTGCAAATCAGACTACTCAAACCCCACTTTG
AATTTTGCGGATAGACccattgtgactctcgagctccaaccttaacccta
actgataacaACCGAaccccgtctaggtccgcagattaaaaaatttcact
tgcatcctggagtatgatatcgtttgccaacctgTCCAGAGGTCTgaact
ttttttaagaatggttCTAGAAGATGAGTATCCCaaagttttttctcatt
tatCCCCTCAAAACAGCTATGCTGTGCCTGTTTATACTTCACTGTTAAAT
ATGTAACCAgggggggggTTAGTGTACTAGAAggcatgtatgtgtactac
aaggtatttttcaaaacttgacacccacccacccctgaagtacaccatac
tacatggaaaaatcccaaTACCACCCCATAGCCCCTATTTACTACCGGGT
AGTacctggaaaaaaaacaaaaccaccccatacccccccccccccattta
ctaCCGGGCACTacctagaaaaaatttttctcgacAATCAGAAAATCggg
taaacatttttccaaaaattgggaaatcaggaaaactttttttcggaaaa
tcaggaaatcaggaaattgggaaaacttttttccaaaaatcagaaaaaca
ggaaaaatttttctcaaaaatccaaaatgcgtgagaaatcgaactttgca
aaaattacgcgagaccatgtggaaatgcatgagtctcacacccaatgcgt
gagagttggcaccaatgttgaatgtttgaattcaaatgttggaatgttta
cattgactcgatAAACCTTCATCTCAGTGGGATCTATtaggatttcaatt
cattccaagaagtttggaagaatgatcttggacaaacttggcttgatcaa
attataatagaacaactttacatttctattttagcagataatttcGGATC
CTTTTTGTTTcccagggctcgaaataacggtcggacatcggacattgtcc
gacccaattgctgaaatgtccgacccaaatcgattctagtcggacatcat
gtccgacccaattactttcggtgccttcaaaaaatttgtcagatgcgttg
tgaaatttccaaaagtaATTATAATTAACATAGAATTGGTAACctcttta
tttacacacaaaaactcccaaagttgcgatcattagtgttagatattcat
tttgtgtgatgctttttctcaacaaatgaaagcatgctTCAAGTAAAAAC
CATAAGCTTCTGACCATTAATTGgcatttgtttagcttctttgtaatcaa
tgtgaaattctatcagaagcttgtgTTAGACTTGAAGTATATAGATTTGG
AAGTAAGTGCAGTCTGTCAGGTGTATTTTCATTCAAGTAAAGATTACTCA
AgctcacaaaaataaaataggGCACctgcttttttcctttttcactcAAA
TAAATCGTGAtcgtttgtttgattttcactATAAGGAAATTTAGTATTTC
AAGCATTCTTGAGTATTTATATGATCACGATCATTGTTTTTGGAGATAGA
GGCTTAAATTCAATTATGCCTGAGATGATTCATTATACTAGCTACGTACA
GAAACCTTTTGCTTTTTTAAGTTGAAAGACGAATGTCCGACCCCGCATAA
AAAtcaatcggacatgtccgacccaatttactttaaaagccttaggacat
gtccgacccaaatcaatttttgatcggacaatgtgtccgaccacctaaat
attgttatttcgagccctggtTTCCACACTTTTAACATCGTTTTTGGCCT
CAACACCAcaattatagtacacaggtagtacatgacaaatttttttctca
aacacccacccaccccaggatacatgccaccttctggtacactgaccccc
ctgCTGATGTAACAACCAATTTGAATTATCAGGGCTAGAATTAAATTATA
AATTCTCTGCAAAAaatgtgagtatttttgacaTTTACATCAACTCTTGG
ATCtattatatttttatccaatttgatattataaaaattatttagacatt
tttagttgttttttatcaaaattttcctccattttttgggtttttgctGT
TGATTCTCTAGGACGATGTTGATTGTTGTTCATCCAATCTATAATTTAac
tatttttaaatatatactTTAAAACCTTTCAgttttgacaggttttgaac
TATTTTTACTCTCATAACCAGATAAAGTCTTACTTTAAAAATGGACAAGC
TACCTTTAAAACATGTTGTTACCGTAAATGAGAGGGGTAGCGCCATCAGA
GCTGTGCGTTTTAATTTTGATGGTGAGTATTGTATGACATGTGGAAGTGA
CAAATCTGTTAAATTATGGAATCCCTATAAAAACATTCTATTGAAGACAT
ACTCTGGACATGGCTATGAAGTTTTGGATTGTGCTTCTTCGACTGATAAT
AGTAGACTGGCTAGTTGTAGTGCAGATAAAACAGTTGTTCTCTGGGATGT
TGCAACTGGTCAAGTTGTTAGGAAGTACAGAGGTCATCTTGGTGTATGTA
TGCttttatttaagttttcgttgttctttgataatttattttttatattg
attctatttcttcagtaaatattttttaaagtacAATCGTATGGATTTTG
AAAGTACTATTTTGCCGTAGTGTgtcccaccttatcctaaaattcccacc
ttcagcccagactcccagatcccagctaaaaacaaaaaaaatatactaat
tcgaggaacaaaacaaaattctcGCACTCATTTTACCCGCATACTTTTAC
TTGACtagttatataagtgtaataaggtaagtaaaagtaaaaaaaatctt
cttaaagatatttatttaaacatcaaataacctgtaataataaaaagaaa
agtttagcatggtaaaaaattatttatgaaatatataaaaaaaatatatt
ataaaatctgaaaataagaaattttactttaactttttccaaaacaccca
aaatcccacctaaagaaattaactcccacctcaacttgtttctcccacct
aaaacctggaaaaaccccaaatcccacctgaaagttttcgacccaaatca
gcAAAACCCTCCCTCACTATTCTGAGGTGGGGGCGTGCACACTATGTTTG
CTATTACTTTATGCAAATCCATTAATTTATTGAAAGAATGAATCTTTCTT
TTGGAttgttttttttacagtatactgtttgaaaaaatcttactATTTAC
ACTTtggtacatttttatttttatcacatttttCAGTCATATTATATTGC
AATTCTAATATTTCCCTGTCTTACTTTTAGAGGGTGAATTGTGTCAAATT
CAATTCTCCTGACAGTAGTGTCATTTTGTCTGGATCATATGATGCTACTG
TACGTTGTTGGGATTGCAGATCAAGGAGTCTGGAACCCATTCAAATTATT
GATGACGCTAAGGACAGTATATCCTCATTGCAAGTtacagaaaatgaaat
tttaacagGGTATGTATAAATCTAGTAAAATTATTTATCATGAATTAAGA
CTAAGTATTTTATAGGTTTATTCTTTGTTTGgtcaaattatttatttttg
gcTGATGAAGATTatgaagattttttgtttttgaaattgagGGTGGattc
cttttaacttatgttcatttaattattttcaattattttgttcatttatt
ttcattttagttcagtggattcttattcaAGGATCTATGATATCCGTAAA
GGACAACTAAGAGAGGATTGTATGGGAGAATCAATCACTTCGATATCTAT
AACAAATGATGGACAATGTATACTGGCATCTTTGCTAGCCAGCTCAATTA
AATTGATTGATAAAGATAATGGATCAGTATTAAATTCATTTGAAGGACAT
GTAAATAAAGAGTATAAAGTTGAcagttgtgtttcaagcaatgATACCCA
TGTTATGAGCGGCTCTGAGGATGGTTGTATTTACTTTTGGGATCTGATTG
AAGCAAAAGTTGTTACGAAAACAGTTGATGCACATAAAGGTGTTGTGTAC
TCTATGTCAAAACACCCTGAAAAGAATAGTATTTTGACTGCTGCAACAGA
TGGAGTCAAATTATGGACATGTAATGAAGATGAAATTAAAGACGATGAAC
AGCAAGGCATAAAATCAACCTGATTAGTTGACTATTTATGCCCAAATAAT
TTCTTGATCTTCACCTTTATACACTTTTATCTGATAATACATTATTTATT
TTCTCTTGATATTGCACACTAGGTAACCAAATAGGTTACAGTTTCTAGTT
CAATAGATAAAATATTGTAATTCTCACATTTTTGTCATGTTGATATAACA
CAACGCTGAATTATTGTAATGTATGCACACCTTGTGTTTTTCAGATGAAA
TATTGTGAAAGATGATAAACAAAcgataataaaaaatcaaaatgagtgAA
AGCACAGATTGTTATGCTGATGTGGAAAAAGGGTTGAAGAAAACTATCAA
CATTATTCTCTCTGAAGAAACTGAAGATAAGTCCAAAGAGAAAAATAACA
ATTTACAACATGCTGTAGAAGATTTTGAACAATCTatacaaaaattgcaa
aactttTTCACAGAGTCTCTCTTGACGTTCAATTATTTGAATCCAGCAAA
GAAGGAGGAAGATGAGATACAACAAATGAAAGAAGAACTTGCTCGTAAAG
ATACTTTGATTAAAGATCAGATGAAAAAGCTTTCGAGATACAGGATTGAA
CTTGAAGTCATTCAAGAATTACAAATGCAAGCTCGTACTAAAAcattata
aaaattaatttctttgatCCATGACAAAAACATTTATGCTGTAAATCAAC
TTGGATTATCTTGAATTCAAAATGAACTTTAACACAGAGCATTTAATATC
ACCTTATCTTGGCTGGTAAGTCACGTGCATCTCCTGTGATCCAAAATCGT
GATGTATAGTACCATTTACTTGGTAAATGATACCAAGCTATGTCTATGCT
ATTTGGAGCTGGAAAAAATGTATTCTTGTTGGAACGAGtatatcaaattt
ctattgcTTTACTACAGTTTAATTTTGAAGCATTAGAGCTTTGTCATCAT
TTAACAGTAAACAATTTTGTGGTGGTTACACTATATTCGCTTCGATATAA
CAAGATTGATATACACTGTTTTCAGTGGTCCCTATAGTGCCCTCAATTTG
TATAATTTCTTTATCTAAAAGTTTGAGTTTTCCCAACTCATCCACTCATG
GCGCAGTACTCATTGCGCTTTTCTACAGATAAGTAGGTTTTATTTCGTAG
AATTTTTAGTAGGATAGAGTGAAGTCCCCAAATGTACTAAATGCTGAAAA
TCCTCTAGAAATTATGGGAAGGGAAGTAGCTACAGTGAGAAATGTGAGGA
ATATACGAGTACTGAATAactgaatatttaaaaaaatttaatagcttaaa
atttgaataactcagccaaaaaaaaaggattttttattCGATCACTTTTT
ATTCATCGTATGCATCTTCtgtaaaaaaatggtaaaataata

Coding sequence (CDS) from alignment at sc0000130_pilon:447366..454807+

>MSTRG.15053.1.p2 ID=MSTRG.15053.1.p2|Name=MSTRG.15053.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000130_pilon:447366..454807+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagtgAAAGCACAGATTGTTATGCTGATGTGGAAAAAGGGTTGAAGAA
AACTATCAACATTATTCTCTCTGAAGAAACTGAAGATAAGTCCAAAGAGA
AAAATAACAATTTACAACATGCTGTAGAAGATTTTGAACAATCTatacaa
aaattgcaaaactttTTCACAGAGTCTCTCTTGACGTTCAATTATTTGAA
TCCAGCAAAGAAGGAGGAAGATGAGATACAACAAATGAAAGAAGAACTTG
CTCGTAAAGATACTTTGATTAAAGATCAGATGAAAAAGCTTTCGAGATAC
AGGATTGAACTTGAAGTCATTCAAGAATTACAAATGCAAGCTCGTACTAA
AAcattataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15053MSTRG.15053Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15053.1.p2MSTRG.15053.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15053.1.p2.exon1MSTRG.15053.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15053.1.p2.exon2MSTRG.15053.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15053.1.p2.exon3MSTRG.15053.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130_pilongenomesc0000130_pilon:447366..454807 +