MSTRG.11004.2.p1 (mRNA) -

Overview
NameMSTRG.11004.2.p1
Unique NameMSTRG.11004.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:841678..845448+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11004.2.p1 ID=MSTRG.11004.2.p1|Name=MSTRG.11004.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3771bp|location=Sequence derived from alignment at sc0000078_pilon:841678..845448+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGGCGCTTATACCGACTGCATAATACCGCCCGTTATCAAGATTCCAAA
ACTCGTCCCAGTTTCCCTTTCATTCTCTGGCTTGGCGGCAAACAAGATGG
CGATGGTTGATGCATATCTCTTGAAATGAAGGGAAGAATCACACAGTTAA
GTACAAGTTTTTTGTCTGTTTAGAGCAATTCTCTTTGTCCATGTTCTGTT
TAATCCTATTTCTTTGAAGTAATATTTTAATACAGTAGAAACGTCTTGGT
CTATATAGAAAATACTGGTGTCCTGTCTTTTGTGATTTATTTTTCTGAAG
TTTATTTTCTATACATTGATTTTAACTCGCTTTCAACACACAGGGTACAA
GTTGagctgaaaaaacaaaaatttctttcaacgGGTTTCTTTAAACAATA
AAGCTTGGGTTTCAAGTGAATAAATTTTTGAgtaaaaatgtaattttcat
tgtttataAGTCAGATGATGATGGCTAGTATTAGGGTTTACGACAAATGA
ATTTGTGGaataaagaattgattttaaaccACTTAGTCAGATACGTGTaa
gttttaattgttctctggGTCTACACATTTGTTGTGTATGTGGCATCTTT
TGATGAAACTTGAGACCCgctttcataaaaaactttacgTATGGCTAGTT
TATGAGTTTACGACAAATGAATTTTTGGaataaagaattgattttaaacc
GCTTAGTCAGATACGTGTAAGTTTTAATTGTTCTCGGGGTCTACACCTTT
GTTGTGTATGTGGCATCTTTTGATGAAACTTGAGACCTgctttcataaaa
aactttacgTATGGCTAGTTTATGAGTTTACGACAAATGAATTGTGGaat
aaagaattgattttaaaccGCTTAGTCAGATACGTGTAAGTTTTAATTGT
TCTCGGGGTGTACACATTTGTTGTGTATGTGGCATCTTTTGATGAAACTT
GAGACCCgctttcataaaaaactttacgTATGGCTAGTTTATGAGTTTAC
GACAAATGAATTTGTGGaataaagaattgattttaaaccGCTTAGTCAGA
TACGTGTAAGTTTTAATTGTTCTCGTGTCTACACATTTGTTGTGTATGTG
GCATCTTTTGATGAAACTTGAGACCTgctttcataaaaaactttacgTAT
GGCTAGTTTATGAGTTTACGACAAATGAATTTGTGGaataaagaattgat
tttaaaccGCTTAGTCATATACGTGTAAGTTTTAAATGTTCTCGGGGTCT
ACACATTTGTTGTGTATGTGGCATCTTTTGATGAAACTTGAGACCcactt
tcataaaaaacttttacgTATGGCTAGTTTATGAGTTTACAACAAATGaa
tttgtagacaaatgaatattttgaaactgttaattcaataaatattttca
tgttttattggtcttctttttttgcaaatacaTCTTATGACAAAACTTGA
GAAATGGCATGGGGGTTTGAAGATAGATCATTTTGAAGAAGGTCAATTGA
TGTATATAGGTGTTGGGCTATTTCTAccattataaagttttttgcacTGT
CTGATGTTGAAAGACTTTGCTTTCTAAAGTgacttataattttttttaca
cattttcaGCACTTCAATTGGATGGTACATTCACTTTGCTGGCTCGGAAT
TAGAGCTGTAATTCCTAAAAAGTaagacttttttaatttttgtcttttca
caataacattttttattcctttcgagaaaattgctgtttttctttCCAAT
GTTTAATTTGATGTCTATTTCTTTTACTGTTTAAGtctttaaagaaagtt
tttataTGATTTGGATAGCCATTTTATTTTCCAAGTAGATGGTAATCaaa
cttattaatttttttataggaGCTCCTTTGACGATGCTTGGGTGAATTGA
TCAGTCAATATGGAACTCAAAATGGATGAATGCAATACTACGAATGGAAT
AACGAACTAACAAAGTTGGTGGACTATCATCTTTTTCGAAATCTTGACGA
ACGCCAAAAACTCAGAAAGTTTTTAAAGCCACAaccaaaagaaatctttt
ttttaaatgacaatgAATTTTATCCAATTCGAAGAAGTCTTATTTTATTA
CCTTTTTTGCATTCCACAATATTTCTACTTAACCTTTCCCacttttttgt
gtcttttttcaGAACAAACTGCTGAATGAGATGTTGGCAACTCAAAGGCG
AACCAACATTCTCCTGGGCCAATTGATTgcaaaggtaattttttttcaat
ttctcaaaaCAACTGGACAACTTTTTTACGCGATGATTTAACACAGCTAC
AAGCACATCCACGCTTTTCTAACTTGAACCTAGATAAATTTAAAACATGC
ATTATTTGTctgttttttgtaaattttgcggCAAGATAGAACATTGGTGT
CACCATTCTTTTTTAGGTTTCAGAGCAACCATTACCTAATGCAAACCCAA
ACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTGTAAGT
ATCATTTCaacttctttgtttttaacttCATATCCACTGAGTTTTGAATA
CTTAAAGGGAAACTTTTTGGATTAAGTTCCCGTCAAATTTCGTTTTCATC
ATCAGAAGAAACTGCTAAAATTCTAAAGCTCTGTGACAAATTGActtgat
aattttgaaaaaactcttGAGAAGGAAAGAAAGACTTAATTTGTTTTGAG
CGGGAGAAaattataattgtaaaattgacattttttttagtttgaataat
tttttgagagagACAATTGTATCCTTTATCCTATCCTTTAGTTACTCTCT
ATTTACTTTATGTATTTGTAACAATTTTAATATGCAACTTTTAGCTtaca
caaaggtttctagataACTAAAATGTTCCTTTTCGTTgctttcattactt
tttgctttatttctaatgtCTGAGTGTCGCCGTGCTAGATTACATTTAAG
TACTGTACGGTTATCTAAAGcaataaaattgtatttttaggtTCTGGCAG
ATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATAT
GCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAAATGG
CATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATC
CTAATCAAGTCAAGAAAATAAAGCGTAAATTGAATTATTTCATCCACCAT
GGGTTGACAAATACgatttaacttattttcaaggttttttgctgttttat
aCAAATAAGTCATGTTAAGCCTGGGAGCTCCTCAAAAAGTTATgccttgt
ttttgtttttttgccatAACTTTCAACTAGTTgtgatataaaaaaattta
aactttgtttcaaaaaattggCAGTCCGCACATTTTGGTTCATTGCTCTT
GAAGGGAAAAAGACAAAACCAAAGTTAGTAATACCTTATTGAAAAGACAA
TTTTGAATGGTAGAATCTAAGcttaaatacttttttaaagaattcgaaag
tgaaaataaaaacttcgAGAGCAATCAACTAAAATGTGTGgactgtcaat
ttttttgaaattcgttcatataatttttttacaggATTGATTCAACACCA
ATATAAACTGGAGGAaccaaagttcaaaaaaatttggccTCATTGCCGGA
GGTCCATCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAA
GATGAGATTCAAGAGaataattaatttaaaattataattggtgcaaagaa
aaattgtttaataCAATCTAt

Coding sequence (CDS) from alignment at sc0000078_pilon:841678..845448+

>MSTRG.11004.2.p1 ID=MSTRG.11004.2.p1|Name=MSTRG.11004.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000078_pilon:841678..845448+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGATTgc
aaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAA
CACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGATGGCTCC
AACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATATGCCATTGC
CTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAAATGGCATGGTCT
CGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCTAATCAA
GTCAAGAAAATAAAGCgATTGATTCAACACCAATATAAACTGGAGGAacc
aaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACCAGGCTG
GAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAAGAGaat
aattaaATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATT
GATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAA
ATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGAT
GGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATATGC
CATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAAATGGCA
TGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCT
AATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCAATATAAACTGGA
GGAaccaaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACC
AGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAA
GAGaataattaaATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGG
CCAATTGATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAA
ACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTG
GCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAAT
ATATGCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAA
ATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTA
GATCCTAATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCAATATAA
ACTGGAGGAaccaaagttcaaaaaaatttggccTCATTGCCGGAGGTCCA
TCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAG
ATTCAAGAGaataattaaATGTTGGCAACTCAAAGGCGAACCAACATTCT
CCTGGGCCAATTGATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAA
ACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTT
gtTCTGGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCC
TACAATATATGCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAAC
TTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACT
GCATTAGATCCTAATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCA
ATATAAACTGGAGGAaccaaagttcaaaaaaatttggccTCATTGCCGGA
GGTCCATCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAA
GATGAGATTCAAGAGaataattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11004MSTRG.11004Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11004.2.p1MSTRG.11004.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11004.2.p1.exon1MSTRG.11004.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon2MSTRG.11004.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon3MSTRG.11004.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon4MSTRG.11004.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon5MSTRG.11004.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon6MSTRG.11004.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.2.p1.exon7MSTRG.11004.2.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:841678..845448 +