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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060427 ID=TCONS_00060427|Name=TCONS_00060427|organism=Clytia hemisphaerica|type=transcript|length=2480bpRun BLAST on NCBI protein sequence of TCONS_00060427-protein >TCONS_00060427-protein ID=TCONS_00060427-protein|Name=TCONS_00060427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp MGVPKFYRWLSERYPCLSQVIKEHQIPEFDNLYLDMNGIIHPCSHPNDDDRun BLAST on NCBI transcript from alignment at scaffold_341:393258..409147- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060427 ID=TCONS_00060427|Name=TCONS_00060427|organism=Clytia hemisphaerica|type=transcript|length=15890bp|location=Sequence derived from alignment at scaffold_341:393258..409147- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_341:393258..409147- >TCONS_00060427 ID=TCONS_00060427|Name=TCONS_00060427|organism=Clytia hemisphaerica|type=CDS|length=11610bp|location=Sequence derived from alignment at scaffold_341:393258..409147- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060427 vs. Swiss-Prot (Human)
Match: XRN1 (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1) HSP 1 Score: 547.74 bits (1410), Expect = 2.561e-173 Identity = 262/364 (71.98%), Postives = 306/364 (84.07%), Query Frame = 3
Query: 1320 MGVPKFYRWLSERYPCLSQVIKEHQIPEFDNLYLDMNGIIHPCSHPNDDDPHFRITEEQIFRNIFNYIEVLFRIIKPKKNFFMAVDGCAPRAKMNQQRSRRFRTAKEAENNIRKAQMKGQTLPKEERFDSNCITPGTEFMARLNNQLKYFVNMKISTDPMWQECTIYLSGHDVPGEGEHKVMDFIRYCKAQPGYDPNTRHCLYGLDADLIMLGLTSHEPHFALLREEVRF-GKQAKRITKPEQQTFXXXXXXXXREYLEFEFGALKSKLHFQYDIENIIDDWILLGFLVGNDFVPHLPNFHINHDALPYLYGVYKDFLLTTDGYLHNGGYINLHRMKKFFEFLSKFDLNNFEEKYEDFKWLQSK 2408
MGVPKFYRW+SERYPCLS+V+KEHQIPEFDNLYLDMNGIIH CSHPNDDD HFRI++++IF +IF+Y+EVLFRIIKP+K FFMAVDG APRAKMNQQR RRFR+AKEAE+ I+KA KG+TLP E RFDSNCITPGTEFMARL+ LKYFVNMKISTD WQ TIY SGH+ PGEGEHK+M+FIR KA+P +DPNTRHCLYGLDADLIMLGLTSHE HF+LLREEVRF GK+ +R+ PE+ TFHLLHLSL+REY+++EF LK K+ F+YDIE IIDDWIL+GFLVGNDF+PHLP+ HINHDALP LYG Y L GY++ G++NL R +K+ LS FD +F E + D KW +SK
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESK 364 The following BLAST results are available for this feature:
BLAST of TCONS_00060427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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