TCONS_00060427-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060427-protein
Unique NameTCONS_00060427-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060427-protein ID=TCONS_00060427-protein|Name=TCONS_00060427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MGVPKFYRWLSERYPCLSQVIKEHQIPEFDNLYLDMNGIIHPCSHPNDDD
PHFRITEEQIFRNIFNYIEVLFRIIKPKKNFFMAVDGCAPRAKMNQQRSR
RFRTAKEAENNIRKAQMKGQTLPKEERFDSNCITPGTEFMARLNNQLKYF
VNMKISTDPMWQECTIYLSGHDVPGEGEHKVMDFIRYCKAQPGYDPNTRH
CLYGLDADLIMLGLTSHEPHFALLREEVRFGKQAKRITKPEQQTFHLLHL
SLLREYLEFEFGALKSKLHFQYDIENIIDDWILLGFLVGNDFVPHLPNFH
INHDALPYLYGVYKDFLLTTDGYLHNGGYINLHRMKKFFEFLSKFDLNNF
EEKYEDFKWLQSKKTGDMLEDSHQNNPRGTPNKRRVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038001XLOC_038001Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060427TCONS_00060427Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR029060PIN_domain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 1..227
e-value: 1.1E-98
score: 329.4
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 1..258
e-value: 7.1E-5
score: 22.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 368..387

Blast
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BLAST of TCONS_00060427-protein vs. Swiss-Prot (Human)
Match: XRN1 (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0
Identity = 262/364 (71.98%), Postives = 306/364 (84.07%), Query Frame = 0 
Query:    1 MGVPKFYRWLSERYPCLSQVIKEHQIPEFDNLYLDMNGIIHPCSHPNDDDPHFRITEEQIFRNIFNYIEVLFRIIKPKKNFFMAVDGCAPRAKMNQQRSRRFRTAKEAENNIRKAQMKGQTLPKEERFDSNCITPGTEFMARLNNQLKYFVNMKISTDPMWQECTIYLSGHDVPGEGEHKVMDFIRYCKAQPGYDPNTRHCLYGLDADLIMLGLTSHEPHFALLREEVRF-GKQAKRITKPEQQTFHLLHLSLLREYLEFEFGALKSKLHFQYDIENIIDDWILLGFLVGNDFVPHLPNFHINHDALPYLYGVYKDFLLTTDGYLHNGGYINLHRMKKFFEFLSKFDLNNFEEKYEDFKWLQSK 363
            MGVPKFYRW+SERYPCLS+V+KEHQIPEFDNLYLDMNGIIH CSHPNDDD HFRI++++IF +IF+Y+EVLFRIIKP+K FFMAVDG APRAKMNQQR RRFR+AKEAE+ I+KA  KG+TLP E RFDSNCITPGTEFMARL+  LKYFVNMKISTD  WQ  TIY SGH+ PGEGEHK+M+FIR  KA+P +DPNTRHCLYGLDADLIMLGLTSHE HF+LLREEVRF GK+ +R+  PE+ TFHLLHLSL+REY+++EF  LK K+ F+YDIE IIDDWIL+GFLVGNDF+PHLP+ HINHDALP LYG Y   L    GY++  G++NL R +K+   LS FD  +F E + D KW +SK
Sbjct:    1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESK 364
The following BLAST results are available for this feature:
BLAST of TCONS_00060427-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRN10.000e+071.985'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE... [more]
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