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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054915 ID=TCONS_00054915|Name=TCONS_00054915|organism=Clytia hemisphaerica|type=transcript|length=2241bpRun BLAST on NCBI protein sequence of TCONS_00054915-protein >TCONS_00054915-protein ID=TCONS_00054915-protein|Name=TCONS_00054915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp MYKIIRQQQTIQRALREAKYSRRNYSRLAQQTNQLRATPTNHGALRAGIRRun BLAST on NCBI transcript from alignment at scaffold_246:132564..147526- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054915 ID=TCONS_00054915|Name=TCONS_00054915|organism=Clytia hemisphaerica|type=transcript|length=14963bp|location=Sequence derived from alignment at scaffold_246:132564..147526- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_246:132564..147526- >TCONS_00054915 ID=TCONS_00054915|Name=TCONS_00054915|organism=Clytia hemisphaerica|type=CDS|length=32997bp|location=Sequence derived from alignment at scaffold_246:132564..147526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054915 vs. Swiss-Prot (Human)
Match: AIFM1 (Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens GN=AIFM1 PE=1 SV=1) HSP 1 Score: 519.62 bits (1337), Expect = 5.536e-175 Identity = 272/491 (55.40%), Postives = 351/491 (71.49%), Query Frame = 2
Query: 497 APLRKYPEEATYVXXXXXXXXXXXXXXXXKKDKTAKILIIGEENALPYMRPPLSKELWFSEDEKVTETLKFKSWNGKERSVFFEGEDYYTKVEDFNEGDRA-LSVITGEKVVQVNPECHEVTLASGESIKYGKLLIATGGTPRGLSVFDTQG--VKDKLTLFRNIADFQSLTXXXXXXXXXXXXXXXFLGSELACALASHGKKKGLKVTQIYPEEGNMAKVLPKYLSDWTTNKVKNEGVNILSKSSVKETSSEGKQVKLTLDSGEEALADHVVVCVGLQPNVELAKSAGLEVDSQQGGFRVNSELEARSDIWVAGDAACFYDINLGRRRVEHHDHAVVSGRLAGENMTGAKKSYQHQSMFWSDLGPEVGYEAIGVCDSSLPTVGFWAKATASDTPKGSEEATGESVRSDAESENVAQSEGSAVAVETPAA-QTEGSEESFGKGIVFYTREKKVVGILLWNIFSQMPIARKIVTEGKDHDDFNALVKAFKLH 1957
P K P +++IG GTAA AA R+IR +D A++LI+ E+ LPYMRPPLSKELWFS+D VT+TL+FK WNGKERS++F+ +Y +D + ++V+TG+KVVQ++ + V L G I Y K LIATGGTPR LS D G VK + TLFR I DF+SL E + + ++GGGFLGSELACAL + G +V Q++PE+GNM K+LP+YLS+WT KV+ EGV ++ + V+ ++ + L G + DH+V VGL+PNVELAK+ GLE+DS GGFRVN+EL+ARS+IWVAGDAACFYDI LGRRRVEHHDHAVVSGRLAGENMTGA K Y HQSMFWSDLGP+VGYEAIG+ DSSLPTVG +AKATA D PK + E +G +RS++E+E+ A + TPA Q E +GKG++FY R+K VVGI+LWNIF++MPIARKI+ +G+ H+D N + K F +H
Sbjct: 123 VPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE--ITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNEVAKLFNIH 611 The following BLAST results are available for this feature:
BLAST of TCONS_00054915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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