TCONS_00054906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054906
Unique NameTCONS_00054906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054906 ID=TCONS_00054906|Name=TCONS_00054906|organism=Clytia hemisphaerica|type=transcript|length=1886bp
gcactctaagggtccgattttagaagccaaattttgaagaaaatcttttt
ggaaAGAGNGAAAGATTGTTTATAAGAGCAGCAGAAGGTTTTGGCGGCCA
ACTATCTGTTTCTGTCAATTTCCCAGAGGAATGCTCATTTTTCTATCCAG
AGATAAAAAATGCAAGAAGTCGGGACGAAGAGAAAGCGTCGACAAGTGAT
GAACGAGCAAACCATCAAAAGTTGGGCATCAAGCATCTTCCACCCATTGT
TATTAATTTCGATTTACCACCTGGTTATCCTTCAAAAGCAATTCCTGAAT
TCACTTTATCTTGTAAATGGCTACCTGTTCAAAAGATTTCAATAATTTGC
AAAGCGTTAGATGAAGCATTCGTTGAAGGAGATGGAAACGAAATTCTTTA
CGAATGGACGACCATCTTATCAGAACAAACATGTGACATTCTGGAGATCT
CTGGAAATTTAGTGTTAGAGGTTGCACGGGACAACACCAAAGATGGAGTC
GATGGAAGGTCAGTGCAAGACATAGCCAATATGGCAGGTCTGGTATCCTT
TTTGATCGACTATAACCAATCGGAGGAGACTCGCTTATTCAAGATTTCAT
ACATTTTATGCGGTGTTTGTTTCAACGAAAAATTTGGTTCGATGTGTGTT
CAATTTCACCAGTGTAAACACGTGTTTTGTAAACAATGCATGGCGGAATA
TTTTACGGTCCAGATAAATGATGGATCAGTCAAAGCTCTGATTTGTCCTG
AGGGGAAGTGTGAAACCCAAGCTGACCCTGCAATGGTAAAATCGTTGGTT
GATAGCGAGTTGTTTGAAAGATATGATAAATTATTGCTGCAAAGGACTTT
GGAATGTATGTCTGATATAACGTACTGTCCACGGAAGGCATGCCAAGCTC
CAGTTTTGAGAGAGGAAGACTTAGACATGGCACGGTGTCCAACTTGTCAC
TTTGTGTTTTGTATTTTGTGTCATAACACATATCACGGTCGTGCAAAGTG
TCCTCTTTCTTCTGAAGAGATGAAGAAACTGAGGGAAACTTATATCAATG
gaactgaagaagaaaaagaggaGTTAATAAAGAAATATGGTAAAAAGGTT
TTCCAACGAATGATCGAAGAAGGTTACAGTGAAGCTTGGCTCGAACGTTT
CTCGCAAAAATGTCCCAAATGTAAAGCCGGTATACAGAAAATAGACGGTT
GCAATAAAATGACATGTTTCCAGTGTCGCACGAACTTTTGTTGGCTTTGT
AACACGTTTTTGAATCAACTGAATCCGTACACACATTTTAATAACCCAAA
GACGAAATGTTACAATAAATTGTTTGAAGGGATTGAACAAGACTTTGGAG
GGTTTGAAGATGGAGAAGAGGACGAGGATGGATGGATTCAATTCCTctga
tgtaaatttttaaagCAGTTCAGGTTGTTTCACCTGTTATATCTTTTTTA
CTCTTTGCTCGCTGGGTTATCGATGATACAAATTTCATTTATACCTTAAC
TAAtaggctattccatttttaaaccatacaagGGTActgacgaacttttc
caggggggtctgagccttgattttGCAAGgggttttcagattttccaagg
gggttattaaaggtttccagAGGGTTCTCTTCTCCTAAACTgacctggtt
tttacacaaatgacagattgaaactaaaatttaccgctaaatttcgaaaa
aaaaatatcaatcgtaaacaaaggaattgctagattcaatctgtcgtcaa
aaatgcggcgcattttttaaggcttcattttttcttgcctgagaaagggt
agagattgaactctagcccttcgggctttaaactcaatggtgtCGATccc
taatttccaggggatattttgatatccaaaattttC
Run BLAST on NCBI

protein sequence of TCONS_00054906-protein

>TCONS_00054906-protein ID=TCONS_00054906-protein|Name=TCONS_00054906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MAGLVSFLIDYNQSEETRLFKISYILCGVCFNEKFGSMCVQFHQCKHVFC
KQCMAEYFTVQINDGSVKALICPEGKCETQADPAMVKSLVDSELFERYDK
LLLQRTLECMSDITYCPRKACQAPVLREEDLDMARCPTCHFVFCILCHNT
YHGRAKCPLSSEEMKKLRETYINGTEEEKEELIKKYGKKVFQRMIEEGYS
EAWLERFSQKCPKCKAGIQKIDGCNKMTCFQCRTNFCWLCNTFLNQLNPY
THFNNPKTKCYNKLFEGIEQDFGGFEDGEEDEDGWIQFL
Run BLAST on NCBI

transcript from alignment at scaffold_246:105438..108621-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054906 ID=TCONS_00054906|Name=TCONS_00054906|organism=Clytia hemisphaerica|type=transcript|length=3184bp|location=Sequence derived from alignment at scaffold_246:105438..108621- (Clytia hemisphaerica)
GCACTCTAAGGGTCCGATTTTAGAAGCCAAATTTTGAAGAAAATCTTTTT
GGAAAGAGNGAAAGATTGTTTATAAGAGCAGCAGAAGGTTTTGGCGGCCA
ACTATCTGTTTCTGTCAATTTCCCAGAGGAATGCTCATTTTTCTATCCAG
AGATAAAAAATGCAAGAAGTCGGTAAGTAATGCCTTTTCTTGAAAATGCT
TCTTGCCTTGGAAAATTCCACTATCAATCAATTCTAATTTAAAAGGAGAT
CATGTCTAGTTCCTTAAAGTAAAGTATTTCTATGCGCGTCTCAACTAAGA
AAATTTGAGTTTTTTTATTTGGGCAGGCAGGGTTCCCAGCGGTCAGGGAA
AACCTGGAAAACCTGGAAAAAGTAGCTTTTTTGGAAAAAGTCAGGGAAAA
CCTGGAAAAGTCAGGGAAAATTTAGAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAGAC
TCGCTTTTTAAAAAAAATATGTATTGAAATTGTGTTAAGTTTTATTTTTT
TTATCTCAATATGGTGTTTTTCAAAATACTGTTGGGGCGAAGGGTCAGGG
AAAAAGGCCCAATATTCTGCTCTGGTCAGGGAAAAAGGCACCTTGGTCAA
TCTAAAAGTCATGGAAAAAGGTCTTTTTTTTGGAAAAAATCATGGAAAAA
TATTTATCTTAAGTGCTGGGAACCCTGGCAGGGTGAAAAGCAGAATGGCA
TGGGTAGCACTTATATAGGTCTAGATCTACTAGTACAGGACTGTAAAGAT
CGAGTAATATCAAATGATGCAGTGGCACTTAGGGGCTGATAGGTGATCAC
TTTAATTAGACTGGCGATATTTAATGAATGCCAATTTTGTGAAGCTTAAT
TGTTTGTAAAGGGACGAAGAGAAAGCGTCGACAAGTGATGAACGAGCAAA
CCATCAAAAGTTGGGCATCAAGCATCTTCCACCCATTGTTATTAATTTCG
ATTTACCACCTGGTTATCCTTCAAAAGCAATTCCTGAATTCACTTTATCT
TGTAAATGGCTACCTGTTCAAAAGGTAAAAGTTTTAATCTCATCGTTTTT
TCTTAGAATTGAAGAAGACAAGAAAAATTAGAATTTCTTATTTGCATATT
TCACCTTTTTGTTTAACTTTTCGAATTTTTTTAACAACCTATATATTAAA
GTCCGCGTCAAAAAGGTGTGCAATTGCAATTTGTAGTGTTTCAAAGCATT
TGTCATATAATAAAAAGGTTGGTATCGTTGGAAAGATATTTGAATGGGCT
TCCGCTGATTTGTTTTTCAAAATTTGTTCAAGAAAGTGAAGAAAAACGAA
GAAGAAAAAATTGAACTTCTTGTAGAGTAGCGCTATAATTACCATTTTCA
CAAAAATGAAACTTCAATCTTAGATCAGCAACAAATCTAATTGTGACGAC
GGCTAGTATCTTGTATTAGTTTTTGAAGCAGTTTATGGCTAAAAACACAT
TTTACAATGGTGGCTTCAATTATTAGCGGTGTCAGAGTACTTTTTAAATT
TTTTAAATTTTTAAGAAAACTGTTGAAAAGTATCTTTACTTCACCTTCAT
GTACTTTTTCAAAACGAATATTTATCTTTTTAGATTTCAATAATTTGCAA
AGCGTTAGATGAAGCATTCGTTGAAGGAGATGGAAACGAAATTCTTTACG
AATGGACGACCATCTTATCAGAACAAACATGTGACATTCTGGAGATCTCT
GGAAATTTAGTGTTAGAGGTTGCACGGGACAACACCAAAGATGGAGTCGA
TGGAAGGTCAGTGCAAGACATAGCCAATATGGCAGGTCTGGTATCCTTTT
TGATCGACTATAACCAATCGGAGGAGACTCGCTTATTCAAGATTTCATAC
ATTTTATGCGGTGTTTGTTTCAACGAAAAATTTGGTTCGATGTGTGTTCA
ATTTCACCAGTGTAAACACGTGTTTTGTAAACAATGCATGGCGGAATATT
TTACGGTCCAGATAAATGATGGATCAGTCAAAGCTCTGATTTGTCCTGAG
GGGAAGTGTGAAACCCAAGCTGACCCTGCAATGGTAAAATCGTTGGTTGA
TAGCGAGTTGTTTGAAAGATATGATAAATTATTGCTGCAAAGGACTTTGG
AATGTATGTCTGATATAACGTACTGTCCACGGAAGGCATGCCAAGCTCCA
GTTTTGAGAGAGGAAGACTTAGACATGGCACGGTGTCCAACTTGTCACTT
TGTGTTTTGTATTTTGTGTCATAACACATATCACGGTCGTGCAAAGTGTC
CTCTTTCTTCTGAAGAGATGAAGAAACTGAGGGAAACTTATATCAATGGA
ACTGAAGAAGAAAAAGAGGAGTTAATAAAGAAATATGGTAAAAAGGTTTT
CCAACGAATGATCGAAGAAGGTTACAGTGAAGCTTGGCTCGAACGTTTCT
CGCAAAAATGTCCCAAATGTAAAGCCGGTATACAGAAAATAGACGGTTGC
AATAAAATGACATGTTTCCAGTGTCGCACGAACTTTTGTTGGCTTTGTAA
CACGTTTTTGAATCAACTGAATCCGTACACACATTTTAATAACCCAAAGA
CGAAATGTTACAATAAATTGTTTGAAGGGATTGAACAAGACTTTGGAGGG
TTTGAAGATGGAGAAGAGGACGAGGATGGATGGATTCAATTCCTCTGATG
TAAATTTTTAAAGCAGTTCAGGTTGTTTCACCTGTTATATCTTTTTTACT
CTTTGCTCGCTGGGTTATCGATGATACAAATTTCATTTATACCTTAACTA
ATAGGCTATTCCATTTTTAAACCATACAAGGGTACTGACGAACTTTTCCA
GGGGGGTCTGAGCCTTGATTTTGCAAGGGGTTTTCAGATTTTCCAAGGGG
GTTATTAAAGGTTTCCAGAGGGTTCTCTTCTCCTAAACTGACCTGGTTTT
TACACAAATGACAGATTGAAACTAAAATTTACCGCTAAATTTCGAAAAAA
AAATATCAATCGTAAACAAAGGAATTGCTAGATTCAATCTGTCGTCAAAA
ATGCGGCGCATTTTTTAAGGCTTCATTTTTTCTTGCCTGAGAAAGGGTAG
AGATTGAACTCTAGCCCTTCGGGCTTTAAACTCAATGGTGTCGATCCCTA
ATTTCCAGGGGATATTTTGATATCCAAAATTTTC

Coding sequence (CDS) from alignment at scaffold_246:105438..108621-

>TCONS_00054906 ID=TCONS_00054906|Name=TCONS_00054906|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_246:105438..108621- (Clytia hemisphaerica)
ATGGCAGGTCTGGTATCCTTTTTGATCGACTATAACCAATCGGAGGAGAC
TCGCTTATTCAAGATTTCATACATTTTATGCGGTGTTTGTTTCAACGAAA
AATTTGGTTCGATGTGTGTTCAATTTCACCAGTGTAAACACGTGTTTTGT
AAACAATGCATGGCGGAATATTTTACGGTCCAGATAAATGATGGATCAGT
CAAAGCTCTGATTTGTCCTGAGGGGAAGTGTGAAACCCAAGCTGACCCTG
CAATGGTAAAATCGTTGGTTGATAGCGAGTTGTTTGAAAGATATGATAAA
TTATTGCTGCAAAGGACTTTGGAATGTATGTCTGATATAACGTACTGTCC
ACGGAAGGCATGCCAAGCTCCAGTTTTGAGAGAGGAAGACTTAGACATGG
CACGGTGTCCAACTTGTCACTTTGTGTTTTGTATTTTGTGTCATAACACA
TATCACGGTCGTGCAAAGTGTCCTCTTTCTTCTGAAGAGATGAAGAAACT
GAGGGAAACTTATATCAATGGAACTGAAGAAGAAAAAGAGGAGTTAATAA
AGAAATATGGTAAAAAGGTTTTCCAACGAATGATCGAAGAAGGTTACAGT
GAAGCTTGGCTCGAACGTTTCTCGCAAAAATGTCCCAAATGTAAAGCCGG
TATACAGAAAATAGACGGTTGCAATAAAATGACATGTTTCCAGTGTCGCA
CGAACTTTTGTTGGCTTTGTAACACGTTTTTGAATCAACTGAATCCGTAC
ACACATTTTAATAACCCAAAGACGAAATGTTACAATAAATTGTTTGAAGG
GATTGAACAAGACTTTGGAGGGTTTGAAGATGGAGAAGAGGACGAGGATG
GATGGATTCAATTCCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034599XLOC_034599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054906-exon-scaffold_246-1575043694:108450..108621TCONS_00054906-exon-scaffold_246-1575043694:108450..108621Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1575043694:107548..107710TCONS_00054906-exon-scaffold_246-1575043694:107548..107710Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1575043694:105438..106988TCONS_00054906-exon-scaffold_246-1575043694:105438..106988Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1510915933:108450..108621TCONS_00054906-exon-scaffold_246-1510915933:108450..108621Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1510915933:107548..107710TCONS_00054906-exon-scaffold_246-1510915933:107548..107710Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1510915933:105438..106988TCONS_00054906-exon-scaffold_246-1510915933:105438..106988Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1491911889:108450..108621TCONS_00054906-exon-scaffold_246-1491911889:108450..108621Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1491911889:107548..107710TCONS_00054906-exon-scaffold_246-1491911889:107548..107710Clytia hemisphaericaexon
TCONS_00054906-exon-scaffold_246-1491911889:105438..106988TCONS_00054906-exon-scaffold_246-1491911889:105438..106988Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054906-proteinTCONS_00054906-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:105438..108621 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.8271	18.3334	6.25725	3.9243	12.5011	9.5998	7.36589	8.62087	6.43074	7.46263	7.44028	5.33378	4.83278	5.16583	6.03468	6.3992	8.05129	6.82453	5.17156	5.046	7.01783	6.19357	21.6843	19.1493	6.03888	10.6585	5.6606	4.76466	14.8435	14.072
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING
Blast
[Close]
BLAST of TCONS_00054906 vs. Swiss-Prot (Human)
Match: RNF14 (E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 4.175e-105
Identity = 167/391 (42.71%), Postives = 242/391 (61.89%), Query Frame = 3 
Query:  228 IKHLPPIVINFDLPPGYPSKAIPEFTLSCKWLPVQKISIICKALDEAFVEGDGNEILYEWTTILSEQTCDILEISGNLVLEV------------ARDNTK--------------DGVDGRSVQDIANMAGLVSFLIDYNQSEETRLFKISYILCGVCFNEKFGSMCVQFHQCKHVFCKQCMAEYFTVQINDGSVKALICPEGKCETQADPAMVKSLVDSELFERYDKLLLQRTLECMSDITYCPRKACQAPVLREEDLDMARCPTCHFVFCILCHNTYHGRAKCPLSSEEMKKLRETYINGTEEEKEELIKKYGKKVFQRMIEEGYSEAWLERFSQKCPKCKAGIQKIDGCNKMTCFQCRTNFCWLCNTFLNQLNPYTHFNNPKTKCYNKL 1322
            I  LPP+V+NF+LPP YPS + P FTLS KWL   ++S +CK LD  + E  G+ +L+ W   L E+T   L I     L++            A  NT+              + VD R+VQD+ +++ L+  ++D++Q+++ + F     LC +CF EK GS C+ F +C+HV+CK C+ +YF +QI DG V+ L CPE KC + A P  VK LV++ELF RYD+LLLQ +L+ M+D+ YCPR  CQ PV++E    M  C +C+F FC LC  TYHG + C +++E++  LR  Y+   E  K  L ++YGK+V Q+ +EE  S+ WLE+ S+ CP C   I+K+DGCNKMTC  C   FCW+C   L++ NPY HFN+P + C+N+L
Sbjct:   67 ICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNRL 457
The following BLAST results are available for this feature:
BLAST of TCONS_00054906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF144.175e-10542.71E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens ... [more]
back to top