TCONS_00054906-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054906-protein
Unique NameTCONS_00054906-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054906-protein ID=TCONS_00054906-protein|Name=TCONS_00054906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MAGLVSFLIDYNQSEETRLFKISYILCGVCFNEKFGSMCVQFHQCKHVFC
KQCMAEYFTVQINDGSVKALICPEGKCETQADPAMVKSLVDSELFERYDK
LLLQRTLECMSDITYCPRKACQAPVLREEDLDMARCPTCHFVFCILCHNT
YHGRAKCPLSSEEMKKLRETYINGTEEEKEELIKKYGKKVFQRMIEEGYS
EAWLERFSQKCPKCKAGIQKIDGCNKMTCFQCRTNFCWLCNTFLNQLNPY
THFNNPKTKCYNKLFEGIEQDFGGFEDGEEDEDGWIQFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034599XLOC_034599Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054906TCONS_00054906Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainSMARTSM00647ibrneu5coord: 189..260
e-value: 0.054
score: 15.9
coord: 96..157
e-value: 4.7E-16
score: 69.3
IPR002867IBR domainPFAMPF01485IBRcoord: 96..157
e-value: 1.4E-13
score: 50.7
coord: 205..241
e-value: 6.4E-7
score: 29.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..100
e-value: 5.1E-4
score: 19.1
NoneNo IPR availableGENE3D2.20.25.20coord: 210..252
e-value: 4.4E-9
score: 36.1
coord: 114..160
e-value: 2.9E-10
score: 39.8
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 199..257
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 96..161
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 24..109
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 45..54
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 27..76
score: 9.568

Blast
[Close]
BLAST of TCONS_00054906-protein vs. Swiss-Prot (Human)
Match: RNF14 (E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 5.388e-94
Identity = 128/281 (45.55%), Postives = 187/281 (66.55%), Query Frame = 0 
Query:    1 MAGLVSFLIDYNQSEETRLFKISYILCGVCFNEKFGSMCVQFHQCKHVFCKQCMAEYFTVQINDGSVKALICPEGKCETQADPAMVKSLVDSELFERYDKLLLQRTLECMSDITYCPRKACQAPVLREEDLDMARCPTCHFVFCILCHNTYHGRAKCPLSSEEMKKLRETYINGTEEEKEELIKKYGKKVFQRMIEEGYSEAWLERFSQKCPKCKAGIQKIDGCNKMTCFQCRTNFCWLCNTFLNQLNPYTHFNNPKTKCYNKLFEGIEQDFGGFEDGEED 281
            ++ L+  ++D++Q+++ + F     LC +CF EK GS C+ F +C+HV+CK C+ +YF +QI DG V+ L CPE KC + A P  VK LV++ELF RYD+LLLQ +L+ M+D+ YCPR  CQ PV++E    M  C +C+F FC LC  TYHG + C +++E++  LR  Y+   E  K  L ++YGK+V Q+ +EE  S+ WLE+ S+ CP C   I+K+DGCNKMTC  C   FCW+C   L++ NPY HFN+P + C+N+LF  ++ D   +ED  ED
Sbjct:  194 LSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED 474
The following BLAST results are available for this feature:
BLAST of TCONS_00054906-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF145.388e-9445.55E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens ... [more]
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