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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054359 ID=TCONS_00054359|Name=TCONS_00054359|organism=Clytia hemisphaerica|type=transcript|length=4735bpRun BLAST on NCBI protein sequence of TCONS_00054359-protein >TCONS_00054359-protein ID=TCONS_00054359-protein|Name=TCONS_00054359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp MTQATQYKDQGNKALSAGNFPEAIKLYTQAIELDSANHVFYSNRSAAYAKRun BLAST on NCBI transcript from alignment at scaffold_242:839398..863162- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054359 ID=TCONS_00054359|Name=TCONS_00054359|organism=Clytia hemisphaerica|type=transcript|length=23765bp|location=Sequence derived from alignment at scaffold_242:839398..863162- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:839398..863162- >TCONS_00054359 ID=TCONS_00054359|Name=TCONS_00054359|organism=Clytia hemisphaerica|type=CDS|length=17886bp|location=Sequence derived from alignment at scaffold_242:839398..863162- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054359 vs. Swiss-Prot (Human)
Match: STIP1 (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1) HSP 1 Score: 527.324 bits (1357), Expect = 3.900e-170 Identity = 279/546 (51.10%), Postives = 369/546 (67.58%), Query Frame = 1
Query: 196 MTQATQYKDQGNKALSAGNFPEAIKLYTQAIELDSANHVFYSNRSAAYAKNKEYQKALEDAQKTVDIKSDWGKGYSRLGAAYEYLGKEMDAMDAYTEGLKHEPNNATLKESAKNLEAKIA--RANNPFMDPNLEAKLAMDPRCREFMSDPSFVAQLSMLKQDPSKLTMLAQTDQRFLTVLSVLLNIPMDMQQPGGXXXXXXXXXXXXXXXXXXXXXXVTLSDNQKSAVSEKEKGNAAYKKKDFETAHQHYDKAIELDPTNIVYYTNKTAVFFEEKKYTECLELCQKAIEIGRENRADFALIAKPMVRIGNVHHAQGEIRKAIEMWKDSLSESNNQQVRDKIYKAEKVLKEQEHLAYINPEKAEEERNMGNEAFKKADYPTAVKHYNEAIKRNPSDPRVYSNRAACYTKLAEFGLALADVDECLKLDDKFLKAYLRKGGICLMIKQILRAKTAYEKALEIDPSCQEAREGIMKC---QQQKHSLTPEERQKQAMEDPEVQEILRDPAMRMILEQMQQNPTAANEHFQNPGVREKLLKLADAGIIQMR 1818
M Q + K++GNKALS GN +A++ Y++AI+LD NHV YSNRSAAYAK +YQKA ED KTVD+K DWGKGYSR AA E+L + +A Y EGLKHE NN LKE +N+EA++A + NPF PNL KL DPR R +SDP++ + L+ PS L Q D R +T LSVLL + + + + P P PK+ + + L +N+K A+ EKE GN AYKKKDF+TA +HYDKA ELDPTN+ Y TN+ AV+FE+ Y +C ELC+KAIE+GRENR D+ IAK RIGN + + + + AI + SL+E V K +AEK+LKEQE LAYINP+ A EE+N GNE F+K DYP A+KHY EAIKRNP D ++YSNRAACYTKL EF LAL D +EC++L+ F+K Y RK +K +A Y+KAL++D SC+EA +G +C Q +H +PE+ +++AM DPEVQ+I+ DPAMR+ILEQMQ++P A +EH +NP + +K+ KL D G+I +R
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQ-DPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEE-DLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD-SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR 543 The following BLAST results are available for this feature:
BLAST of TCONS_00054359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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