TCONS_00054197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054197
Unique NameTCONS_00054197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054197 ID=TCONS_00054197|Name=TCONS_00054197|organism=Clytia hemisphaerica|type=transcript|length=2124bp
ACCAAGGAATCTTAACCACAAAAGAGGACACCCGTCAATTTTTCGTTCAA
TTATTTATAtatatttaatgttttttcttagaTGATATTGAATATGAAAG
GAAAGCAATTATTTGTAAGCATCAAGTTCCAACGactaaaaaatttttaa
aattatgaaaacatgAAGATGACCCAAGGAATAACAATCAGGAAATGAGA
GGACAGAATTTTCCATTTGGAATGAGTTAAATCGATTAAGTATACATTAT
CTATCGTGACTGTCTGTCAGTTGTTGTCTGGTGTAAGGGACTTCTCACTT
CTCGAGAGAGGACATTTTCCTTCAAGAGAGGTTTTTTGAAACTTGCTTGC
TTTACAACATTTCCGAAGGACCTTGTTACCATCTTGAATTCGCTCAATAA
TATATTCTTTACGGAGACTGATAACCGCTCATTAAGTTACAAACAAGCTG
GAATTGGTACCACAATTGACTGGAATTATCATACAAAGGCTTCAATTTAA
ATTAGTCCTGCTACCATTCTCGACTTACTTCGTTGGGCTGAAGCTCTCAT
TATTTGTGTCACCAAAGCATTCTCAAGATGAGTACCAGCGCACGGAATAT
CGTGACCACGGACATGAAAACTATTCGCGATTACCGTGAAGTACATGACA
CAGAAGAATTTAATGCATTTATTGAAATGAACGAAAAGAAAATGGCGGAA
CGAGAAGCGAATAATCGACGCGGTGATGCTGGATTTGAAAATGAACGTTC
TACTAATAAAAAGATTGAGACCAAAAAAGAACAGAGAATCACAGAAGCTA
AAGAGAAAGCTAAAGAACATAAAAAGAAACAGGAGAAAATTTTGGCACCG
CCAACGCCCCCGCCCCAAGAGGAGGAAGAAGTAATTGAGGAAGTGAAACC
AATGATTGATGAAGAAGAATGGAAAAGGAGGGTGATGGAAGATATTGTGG
AGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAAGATTTCAGTGCAC
GAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATGTTTCGGCTGAAGA
TattgaagatatttttgacGTCATCGACCTCGATGGCGACGGTGAGATCA
GTTTTGAGGAATTCAAGGATGCGATGTACGAAAAGATGTCACAACAAACA
GTGGACGAAGACCTTATTGGTGCGTTCGAAATCTTCGATGACGATGGAGA
TGGCTATATCTCACCAACAGAAATCCAATTGATGTTCAAGAAACTTGGTG
AATTAATCTCCACTGACGAAGCTGTGGAAATGATGAAAGACTGTGATATC
AATAAAGATGGACTTATCGATTTTGAAGAATTCAAAGCTTTCTATCTGAA
GATTTTTGAGAACCAACCAACACTGGCTGAAATGATGATGCAAGAGCaag
aaagaattgaaaaagaagaaatcgaTAAAGCTGAATGGGATAAATTGAAC
GCACAATTCCCTGCTTCAGGACATCCAGAATCTTCCATATTTGATTACAA
ATAATGATGAAAAGGATACGAAAAGGATGTTTTCCCCCTGGGTATAGAAT
GTCTACTTCGATAATGATATTCACGTACCATGATTCAGTACGTGTGAAAC
AGTTTTGATTGCCGTGAATCTCGCAAGCTGCTTGGAAGATAGAAAGAAGA
TAAGAAAAGatgaattacaaacaaaatggacaaaattcaAATGACAAGAT
AAGCTTAATTTTAAATTGAAACATGTTTTACCAGTCATTAAAACATTTAT
CAATACTGGTAGCAACTTTTTGAATGAAACAACGAAGGACTGATCAACTC
TTGTGTCATCAGCATTCAACGAACTGAAAAATTGACAAACCAGATGcacc
aaaaaacaaaatatatatttttacaaaGATATTGTGAGCCTACGACAAAA
GATTTTTcgtttattctttttttattctacAGAGGAAAGTtttacttaaa
ttttggtatatatAACTTTAAAATCGGTTCACTCAAGGTTatgttaaaaa
aactgaaattttgaccaaccaaaaatgaaaaaaaaaataaaaacagtaaT
TTTAATGAAGAATCAACGAGAAATCTTTAACCGTAAGCTCACGATATctt
gacaaacctgtatactttttttgg
Run BLAST on NCBI

protein sequence of TCONS_00054197-protein

>TCONS_00054197-protein ID=TCONS_00054197-protein|Name=TCONS_00054197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MSTSARNIVTTDMKTIRDYREVHDTEEFNAFIEMNEKKMAEREANNRRGD
AGFENERSTNKKIETKKEQRITEAKEKAKEHKKKQEKILAPPTPPPQEEE
EVIEEVKPMIDEEEWKRRVMEDIVESFHAIDLNGDGKISVHELMSAMNAA
GEDVSAEDIEDIFDVIDLDGDGEISFEEFKDAMYEKMSQQTVDEDLIGAF
EIFDDDGDGYISPTEIQLMFKKLGELISTDEAVEMMKDCDINKDGLIDFE
EFKAFYLKIFENQPTLAEMMMQEQERIEKEEIDKAEWDKLNAQFPASGHP
ESSIFDYK
Run BLAST on NCBI

transcript from alignment at scaffold_242:268028..274972+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054197 ID=TCONS_00054197|Name=TCONS_00054197|organism=Clytia hemisphaerica|type=transcript|length=6945bp|location=Sequence derived from alignment at scaffold_242:268028..274972+ (Clytia hemisphaerica)
ACCAAGGAATCTTAACCACAAAAGAGGACACCCGTCAATTTTTCGTTCAA
TTATTTATAtatatttaatgttttttcttagaTGATATTGAATATGAAAG
GAAAGCAATTATTTGTAAGCATCAAGTTCCAACGactaaaaaatttttaa
aattatgaaaacatgAAGATGACCCAAGGTAAgtgttaaagtttttttat
gattcaTACTTTGGAGTGTGGCTAGGGACAAACTACCCGCCGGGGGAGTC
AGGCAGATTGAGcaacgggtatgtgcggcggtaaAGGGTACGTTTTTTCA
AGATAGCAGAAACGcagcactgtaagggtggactttttgataaatgcaca
TCAAGATTAGAAATTTCAACAAATCTAGGAAAAAGTGcaaaattttgccc
aaaaattctGATTTTCTTTCGCTGAAAGAGTTTAGAATTTGAAACTCtat
aaaagccatttttttcgccgcacatacggTGACACTTCCCCACTCTCCTT
GGCAAACTAGCAATGTTTTTTAGAAATTGCCATAAATTATAATTTCGAAC
TTTCGCTTTCCTGTGGCTTGATAAACGAGTCGGTGGTACGTCACAaatta
tagcaaaaaaaaaaattcaaaaaggtaACAGTGCTCTTGTGGATGCAGAG
AAAATTAATTATTATAGAGATTTTtctactgacctttatataccctggac
aaagcttctcaatcccagccaagcaaaatctttgatcggagttttNcact
gacctttatataacctggacaaagcttctcaatcccagccaagcaaaatc
tttgattggagttttttgaaaattggtaccctaatgtcggcactactcga
tagggGTGTAAATGCATctagagcgctaggtctacttttcctcaaattct
tttgatgatgtagcggcgttagacgttaatttttaacattgcaatagctt
ctccttgggtaccaattctaaaaaaactccaatcNGGGTGTAAATGCATc
tagagcgctaggtctacttttccacaaattcttttgatgatgtagcggcg
ttagacgttaatttttaacattgcaatagcttctccttgggtaccaattc
taaaaaaactccaatcaaagatggcagatattgtttggtccagggttata
taaaggtcagtggatttttcatgttttgttgaTGTTACCTAACATTCGCC
ATTATGGAATGTGATTATTTGCGTGCCtttcgtgccctcgtgggttacGT
GGgtctcgtgggtccaaaaaaaatttacgtgggtatctcgtggggaaaaa
aaaaataatgtgggtatctcgtgggtccaaaaaattGCGCCAAGACTCTG
TGTATAGACTCGACATAGACTCGTTTTTTTGGACCcccgtaatttttttt
tgaacccacgagatacccacgtaattttttttttggacccacgagatacc
cacgtaaatttttttttgacccacgagatacccacgAAGGCacacaaatc
gaatgtttgcttccataatagcggaagttacgtaacttaacaaaacatga
aGACTTCTATAAATTCAGTTACAACATTTATCCAAACCGAACTGTAATTT
ATAGGGTTTTGACGAGGCTTAATATTCAAGTTAACAATGTGGAAATTAGT
AAACTTTGAACAATAATAAACTGATCGTACTGAAAAAGTTGATAGATTTA
ATGTTCCTTTAGCAGTCAGCCTGTTATATATTTTAGATTGTTAGACAAGC
AACCCAGAGATATAAAACAAACATTAGATTAATGCATTGATATTCATACA
TGTATACCATCCATAATTCATTGCGGTAGTCATCAAACTGTCACAGTATG
TATTCACGTGTCAATATACTGTAACCTAGTTACAAtccttttttatcaaa
tttttagaTGAATTGAAGGAATATATATTTTGGAAAGTGAaagaataata
aaaagaaaaaaactattttatttcaagtttttattcGAACTGGTTTTTGT
TTTTCCGACGGAAGAAACAATAATTTAATTGCGCTTGAATTAAGGCGAAT
TAAGGCAACCCAGAACTTCCTCACGCAGTTAGTTTGAATCAAATTTTCTC
AAtggcaattttttattttattgcttTTAGTTATcaatcattatttgtgt
tttaGGAATAACAATCAGGAAATGAGAGGACAGAATTTTCCATTTGGAAT
GAGTTAAATCGATTAAGTATACATTATCTATCGTGACTGTCTGTCAGTTG
TTGTCTGGTGTAAGGGACTTCTCACTTCTCGAGAGAGGACATTTTCCTTC
AAGAGAGGTTTTTTGAAACTTGCTTGCTTTACAACATTTCCGAAGGACCT
TGTTACCATCTTGAATTCGCTCAATAATATATTCTTTACGGAGACTGATA
ACCGCTCATTAAGTTACAAACAAGCTGGAATTGGTACCACAATTGACTGG
AATTATCATACAAAGGCTTCAATTTAAATTAGTCCTGCTACCATTCTCGA
CTTACTTCGTTGGGCTGAAGCTCTCATTATTTGTGTCACCAAAGCATTCT
CAAGATGAGTACCAGCGCACGGAATATCGTGACCACGGACATGAAAACTA
TTCGCGATTACCGTGAAGTACATGACACAGAAGAATTTAATGCATTTATT
GAAATGAACGAAAAGAAAATGGCGGAACGAGAAGCGAATAATCGACGCGG
TGATGCTGGATTTGAAAATGAACGTTCTACTAATAAAAAGATTGAGACCA
AAAAAGAACAGAGAATCACAGAAGCTAAAGAGAAAGCTAAAGAACATAAA
AAGAAACAGGAGAAAATTTTGGCACCGCCAACGCCCCCGCCCCAAGAGGA
GGAAGAAGTAATTGAGGTATTGAATGGGTTttgtttctcaatttcttttt
ttcatacCTGTAAAATTGTTGGGCttttctgattttcttgaatgttactt
taaactttaaatttggTAAGCTCAAATCAGAGGTATAGCTTGTTACACTT
GATTTTGAGTATGTAGGTAAGATTGTTGATTTGAATATGGATTGAACTCT
TTTCTTTTAGGAAGTGAAACCAATGATTGATGAAGAAGAATGGAAAAGGA
GGGTGATGGAAGGTAAGGAGGGAGGTTTTTCTAAGTCTAAAtttaggatg
aatattaaaAGGAGCGGTGATTGGCTAATGCAAAAGAATCGGGCTCTTCC
AGAAGATTTTTGTACATTGGCGTGGAGGATAAATTGGGTATTTTGTCcag
gggggtagtgaaaaatctgcaaaatttgtttgttttaggggcaaacttgc
tctgattaagggtgattttgaatgtccggaGGGTCAAATAATGCTTTTCC
GGGGGGGGTGAGATccgttgtccgggggtcaaaattcacaatgtccgggt
gtaaatttccaaaaaaaaattatatcctccacccccccccaccatattca
attttttttctggaagagcccattcatACACATAAAAATTAGAACCTGAT
TATTTTTAAGCAAAAGGGAGCACAGTTTTAAATGTTCAGGTTGAACAATC
AGGTCGGTCCATCATATTCGCCGAATCCTTTAAGAAAAAGAATGTGGTGT
GTGGTAGAATGGATGATATGTTATGAGATTAGAATTGTTTCCTTTTGGGT
GTCCTGGTGTCCTACTGGGAAAGGGAAATTCCGTATTGCTGGATGCTCTG
TGAGATAAAGATGGTgtaaccaatgaagtataagcccgaagggctagaat
tgaatctccttggtaggatttgaagccaacaaaatcctaccaaagttgca
cgGTCTGACATATTGAAATTATAATTTATtacttaatttaaaaaaaatat
catataCTCGAAAACAAAGGTATTGCttgattcaatccgtcgtcaagaAT
ACGgtgcatattttaaggcttcactttttcttgcttctagcccttcgggc
ttatactccATTGGGTGTAACCTTGACACTGACAAATATCAAGGATAGTA
ActacataaacttttttttctgaccatttgctttgatttttttccatcGA
CAGATATTGTGGAGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAAG
ATTTCAGTGCACGAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATGT
TTCGGCTGAAGATattgaagatatttttgacGTCATCGACCTCGATGGTA
AGGCTCCTTACTGTAGACTGTCTTACTGTACTCCTTATACTGTATTATCG
ATTCTTTGACagataataccgagtttatgtatgtgtgtttttcaacgacg
gagacggtaaggttctaatttgattagatcctgaccaactgaggacgacg
gtaaatcagcacttctaccgtcctcgatttagcgggtcagaactgcgggt
tatttattccaaatcgcttcagtcactctacagtcctcaaaagtgcaaat
acataaactcgctaatttGATGAAGGTAGCGGGGAAAGGATGTGCTCTAA
ATCTCATCAAAGTAAGGGTCTTTTTGGCCAAGATGTTTTAAACTATTTCT
TCAAGAATTACCAGAGTCAATTTGGCTTTCGCACCAAACACgccttttca
taaatcatttagagtgcaacgactgcctcgttttgaaactattatcaagg
tgattaaatcccaataacgtttcttttataaatagagtaccttaaaggaa
gaaattttggcggaaagaaaatttggcggatttggcggatttgactgaaa
tccgccaaattaagttcccgccaaaatttctttttcccgccatccgccaa
attaatttcccgccaaaatttctttttcccgccatccgccaaattaattt
cccgccaaaatttctttttcccgccatccgccaaattaatttcccgccaa
aatttctttttcccgccatccgccaaattaatttcccgccaaaatttctt
tttcccgccatccgccaaattaatttcccgccaaaatttcttttttcctc
catccgccaaattaaattccctctgaaaaaacttttttggccatccgcca
aattaaattcccgccaaaatttcttcctttaaggtatactAACTCTTCTG
GAAATCGAAAAACAAGATAAGCGTTGCTTATGGCGTAATTATGAGAGATC
TGTCATATgaaccaaataaaaataatgttAGACTTCAATTACATTTCACA
CTTATATTCACACGTATTTCAGGCGACGGTGAGATCAGTTTTGAGGAATT
CAAGGATGCGATGTACGAAAAGATGTCACAACAAACAGTGGACGAAGACC
TTATTGGTGCGTTCGAAATCTTCGATGACGATGGAGATGGCTATATCTCA
CCAACAGAAATCCAATTGATGTTCAAGAAACTTGGTGAATTAATCTCCAC
TGACGAAGCTGTGGAAATGATGAAAGACTGTGATATCAATAAAGATGGAC
TTATCGATTTTGAAGgtacaaaagaatatttttgatttgttaTGATTGGT
CGATGCAAATGAtgaatgacttttttgaaaataaaacacccctgtctcac
agccccggtggattTTTTTGCCACCACAGTGAATCtcaatgggaatagaa
attatattATTCCCAAGCTTAAGATATCCAGTGGGTATGGTTTTGGATAG
CTTGGATAGATTTTTTAACATtggatttcgaatggggatgaaatcaaaat
cagatttaaagtggggctgaaattgcagggtattttgtccaccggggacg
aaagaAATCAAATCCCTGGTTTGACTACCTtaagtttttagaatttattc
GAGATATGGAGttaggtttataaggcattgttaactatatggagaaggag
acattcgagttatagaggctcGAGTTAAGCATTGGAGTAGtaaattgaaa
tcaaaaataatagCGCTCAGCaatgcatacgtcataattattacttttat
tttttttgacatttgtacgagttgcaatcccacaattcaatgcggctcaa
ttaaagatacgtgcaagttgttatatatctttaGTCAAATGATTTAATTA
ACTTGCAAAAGAGATTTTaaaacgcaaaggttgatgggattgtaactcgt
acaaacacattgAGAGTAATGATTGTGTCAAAAGTCTATTTTCGTTTAGA
ATTCAAAGCTTTCTATCTGAAGATTTTTGAGAACCAACCAACACTGGCTG
AAATGATGATGCAAGAGCaagaaagaattgaaaaagaagaaatcgaTAAA
GCTGAATGGGATAAATTGAACGCACAATTCCCTGCTTCAGGACATCCAGA
ATCTTCCATATTTGATTACAAATAATGATGAAAAGGATACGAAAAGGATG
TTTTCCCCCTGGGTATAGAATGTCTACTTCGATAATGATATTCACGTACC
ATGATTCAGTACGTGTGAAACAGTTTTGATTGCCGTGAATCTCGCAAGCT
GCTTGGAAGATAGAAAGAAGATAAGAAAAGatgaattacaaacaaaatgg
acaaaattcaAATGACAAGATAAGCTTAATTTTAAATTGAAACATGTTTT
ACCAGTCATTAAAACATTTATCAATACTGGTAGCAACTTTTTGAATGAAA
CAACGAAGGACTGATCAACTCTTGTGTCATCAGCATTCAACGAACTGAAA
AATTGACAAACCAGATGcaccaaaaaacaaaatatatatttttacaaaGA
TATTGTGAGCCTACGACAAAAGATTTTTcgtttattctttttttattcta
cAGAGGAAAGTtttacttaaattttggtatatatAACTTTAAAATCGGTT
CACTCAAGGTTatgttaaaaaaactgaaattttgaccaaccaaaaatgaa
aaaaaaaataaaaacagtaaTTTTAATGAAGAATCAACGAGAAATCTTTA
ACCGTAAGCTCACGATATcttgacaaacctgtatactttttttgg

Coding sequence (CDS) from alignment at scaffold_242:268028..274972+

>TCONS_00054197 ID=TCONS_00054197|Name=TCONS_00054197|organism=Clytia hemisphaerica|type=CDS|length=4635bp|location=Sequence derived from alignment at scaffold_242:268028..274972+ (Clytia hemisphaerica)
ATGAGTACCAGCGCACGGAATATCGTGACCACGGACATGAAAACTATTCG
CGATTACCGTGAAGTACATGACACAGAAGAATTTAATGCATTTATTGAAA
TGAACGAAAAGAAAATGGCGGAACGAGAAGCGAATAATCGACGCGGTGAT
GCTGGATTTGAAAATGAACGTTCTACTAATAAAAAGATTGAGACCAAAAA
AGAACAGAGAATCACAGAAGCTAAAGAGAAAGCTAAAGAACATAAAAAGA
AACAGGAGAAAATTTTGGCACCGCCAACGCCCCCGCCCCAAGAGGAGGAA
GAAGTAATTGAGGAAGTGAAACCAATGATTGATGAAGAAGAATGGAAAAG
GAGGGTGATGGAAGATATTGTGGAGAGTTTCCATGCGATCGATTTGAACG
GAGATGGCAAGATTTCAGTGCACGAATTAATGTCTGCAATGAATGCTGCT
GGTGAAGATGTTTCGGCTGAAGATattgaagatatttttgacGTCATCGA
CCTCGATGGCGACGGTGAGATCAGTTTTGAGGAATTCAAGGATGCGATGT
ACGAAAAGATGTCACAACAAACAGTGGACGAAGACCTTATTGGTGCGTTC
GAAATCTTCGATGACGATGGAGATGGCTATATCTCACCAACAGAAATCCA
ATTGATGTTCAAGAAACTTGGTGAATTAATCTCCACTGACGAAGCTGTGG
AAATGATGAAAGACTGTGATATCAATAAAGATGGACTTATCGATTTTGAA
GAATTCAAAGCTTTCTATCTGAAGATTTTTGAGAACCAACCAACACTGGC
TGAAATGATGATGCAAGAGCaagaaagaattgaaaaagaagaaatcgaTA
AAGCTGAATGGGATAAATTGAACGCACAATTCCCTGCTTCAGGACATCCA
GAATCTTCCATATTTGATTACAAATAAATGAGTACCAGCGCACGGAATAT
CGTGACCACGGACATGAAAACTATTCGCGATTACCGTGAAGTACATGACA
CAGAAGAATTTAATGCATTTATTGAAATGAACGAAAAGAAAATGGCGGAA
CGAGAAGCGAATAATCGACGCGGTGATGCTGGATTTGAAAATGAACGTTC
TACTAATAAAAAGATTGAGACCAAAAAAGAACAGAGAATCACAGAAGCTA
AAGAGAAAGCTAAAGAACATAAAAAGAAACAGGAGAAAATTTTGGCACCG
CCAACGCCCCCGCCCCAAGAGGAGGAAGAAGTAATTGAGGAAGTGAAACC
AATGATTGATGAAGAAGAATGGAAAAGGAGGGTGATGGAAGATATTGTGG
AGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAAGATTTCAGTGCAC
GAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATGTTTCGGCTGAAGA
TattgaagatatttttgacGTCATCGACCTCGATGGCGACGGTGAGATCA
GTTTTGAGGAATTCAAGGATGCGATGTACGAAAAGATGTCACAACAAACA
GTGGACGAAGACCTTATTGGTGCGTTCGAAATCTTCGATGACGATGGAGA
TGGCTATATCTCACCAACAGAAATCCAATTGATGTTCAAGAAACTTGGTG
AATTAATCTCCACTGACGAAGCTGTGGAAATGATGAAAGACTGTGATATC
AATAAAGATGGACTTATCGATTTTGAAGAATTCAAAGCTTTCTATCTGAA
GATTTTTGAGAACCAACCAACACTGGCTGAAATGATGATGCAAGAGCaag
aaagaattgaaaaagaagaaatcgaTAAAGCTGAATGGGATAAATTGAAC
GCACAATTCCCTGCTTCAGGACATCCAGAATCTTCCATATTTGATTACAA
ATAAATGAGTACCAGCGCACGGAATATCGTGACCACGGACATGAAAACTA
TTCGCGATTACCGTGAAGTACATGACACAGAAGAATTTAATGCATTTATT
GAAATGAACGAAAAGAAAATGGCGGAACGAGAAGCGAATAATCGACGCGG
TGATGCTGGATTTGAAAATGAACGTTCTACTAATAAAAAGATTGAGACCA
AAAAAGAACAGAGAATCACAGAAGCTAAAGAGAAAGCTAAAGAACATAAA
AAGAAACAGGAGAAAATTTTGGCACCGCCAACGCCCCCGCCCCAAGAGGA
GGAAGAAGTAATTGAGGAAGTGAAACCAATGATTGATGAAGAAGAATGGA
AAAGGAGGGTGATGGAAGATATTGTGGAGAGTTTCCATGCGATCGATTTG
AACGGAGATGGCAAGATTTCAGTGCACGAATTAATGTCTGCAATGAATGC
TGCTGGTGAAGATGTTTCGGCTGAAGATattgaagatatttttgacGTCA
TCGACCTCGATGGCGACGGTGAGATCAGTTTTGAGGAATTCAAGGATGCG
ATGTACGAAAAGATGTCACAACAAACAGTGGACGAAGACCTTATTGGTGC
GTTCGAAATCTTCGATGACGATGGAGATGGCTATATCTCACCAACAGAAA
TCCAATTGATGTTCAAGAAACTTGGTGAATTAATCTCCACTGACGAAGCT
GTGGAAATGATGAAAGACTGTGATATCAATAAAGATGGACTTATCGATTT
TGAAGAATTCAAAGCTTTCTATCTGAAGATTTTTGAGAACCAACCAACAC
TGGCTGAAATGATGATGCAAGAGCaagaaagaattgaaaaagaagaaatc
gaTAAAGCTGAATGGGATAAATTGAACGCACAATTCCCTGCTTCAGGACA
TCCAGAATCTTCCATATTTGATTACAAATAAATGAGTACCAGCGCACGGA
ATATCGTGACCACGGACATGAAAACTATTCGCGATTACCGTGAAGTACAT
GACACAGAAGAATTTAATGCATTTATTGAAATGAACGAAAAGAAAATGGC
GGAACGAGAAGCGAATAATCGACGCGGTGATGCTGGATTTGAAAATGAAC
GTTCTACTAATAAAAAGATTGAGACCAAAAAAGAACAGAGAATCACAGAA
GCTAAAGAGAAAGCTAAAGAACATAAAAAGAAACAGGAGAAAATTTTGGC
ACCGCCAACGCCCCCGCCCCAAGAGGAGGAAGAAGTAATTGAGGAAGTGA
AACCAATGATTGATGAAGAAGAATGGAAAAGGAGGGTGATGGAAGATATT
GTGGAGAGTTTCCATGCGATCGATTTGAACGGAGATGGCAAGATTTCAGT
GCACGAATTAATGTCTGCAATGAATGCTGCTGGTGAAGATGTTTCGGCTG
AAGATattgaagatatttttgacGTCATCGACCTCGATGGCGACGGTGAG
ATCAGTTTTGAGGAATTCAAGGATGCGATGTACGAAAAGATGTCACAACA
AACAGTGGACGAAGACCTTATTGGTGCGTTCGAAATCTTCGATGACGATG
GAGATGGCTATATCTCACCAACAGAAATCCAATTGATGTTCAAGAAACTT
GGTGAATTAATCTCCACTGACGAAGCTGTGGAAATGATGAAAGACTGTGA
TATCAATAAAGATGGACTTATCGATTTTGAAGAATTCAAAGCTTTCTATC
TGAAGATTTTTGAGAACCAACCAACACTGGCTGAAATGATGATGCAAGAG
CaagaaagaattgaaaaagaagaaatcgaTAAAGCTGAATGGGATAAATT
GAACGCACAATTCCCTGCTTCAGGACATCCAGAATCTTCCATATTTGATT
ACAAATAAATGAGTACCAGCGCACGGAATATCGTGACCACGGACATGAAA
ACTATTCGCGATTACCGTGAAGTACATGACACAGAAGAATTTAATGCATT
TATTGAAATGAACGAAAAGAAAATGGCGGAACGAGAAGCGAATAATCGAC
GCGGTGATGCTGGATTTGAAAATGAACGTTCTACTAATAAAAAGATTGAG
ACCAAAAAAGAACAGAGAATCACAGAAGCTAAAGAGAAAGCTAAAGAACA
TAAAAAGAAACAGGAGAAAATTTTGGCACCGCCAACGCCCCCGCCCCAAG
AGGAGGAAGAAGTAATTGAGGAAGTGAAACCAATGATTGATGAAGAAGAA
TGGAAAAGGAGGGTGATGGAAGATATTGTGGAGAGTTTCCATGCGATCGA
TTTGAACGGAGATGGCAAGATTTCAGTGCACGAATTAATGTCTGCAATGA
ATGCTGCTGGTGAAGATGTTTCGGCTGAAGATattgaagatatttttgac
GTCATCGACCTCGATGGCGACGGTGAGATCAGTTTTGAGGAATTCAAGGA
TGCGATGTACGAAAAGATGTCACAACAAACAGTGGACGAAGACCTTATTG
GTGCGTTCGAAATCTTCGATGACGATGGAGATGGCTATATCTCACCAACA
GAAATCCAATTGATGTTCAAGAAACTTGGTGAATTAATCTCCACTGACGA
AGCTGTGGAAATGATGAAAGACTGTGATATCAATAAAGATGGACTTATCG
ATTTTGAAGAATTCAAAGCTTTCTATCTGAAGATTTTTGAGAACCAACCA
ACACTGGCTGAAATGATGATGCAAGAGCaagaaagaattgaaaaagaaga
aatcgaTAAAGCTGAATGGGATAAATTGAACGCACAATTCCCTGCTTCAG
GACATCCAGAATCTTCCATATTTGATTACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034186XLOC_034186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054197-exon-scaffold_242-1491911889:268028..268205TCONS_00054197-exon-scaffold_242-1491911889:268028..268205Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:268028..268205TCONS_00054197-exon-scaffold_242-1510915933:268028..268205Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:268028..268205TCONS_00054197-exon-scaffold_242-1575043694:268028..268205Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1491911889:270183..270893TCONS_00054197-exon-scaffold_242-1491911889:270183..270893Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:270183..270893TCONS_00054197-exon-scaffold_242-1510915933:270183..270893Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:270183..270893TCONS_00054197-exon-scaffold_242-1575043694:270183..270893Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1491911889:271088..271139TCONS_00054197-exon-scaffold_242-1491911889:271088..271139Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:271088..271139TCONS_00054197-exon-scaffold_242-1510915933:271088..271139Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:271088..271139TCONS_00054197-exon-scaffold_242-1575043694:271088..271139Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1491911889:272081..272224TCONS_00054197-exon-scaffold_242-1491911889:272081..272224Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:272081..272224TCONS_00054197-exon-scaffold_242-1510915933:272081..272224Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:272081..272224TCONS_00054197-exon-scaffold_242-1575043694:272081..272224Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1491911889:273250..273492TCONS_00054197-exon-scaffold_242-1491911889:273250..273492Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:273250..273492TCONS_00054197-exon-scaffold_242-1510915933:273250..273492Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:273250..273492TCONS_00054197-exon-scaffold_242-1575043694:273250..273492Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1491911889:274177..274972TCONS_00054197-exon-scaffold_242-1491911889:274177..274972Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1510915933:274177..274972TCONS_00054197-exon-scaffold_242-1510915933:274177..274972Clytia hemisphaericaexon
TCONS_00054197-exon-scaffold_242-1575043694:274177..274972TCONS_00054197-exon-scaffold_242-1575043694:274177..274972Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054197-proteinTCONS_00054197-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:268028..274972 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.981891	0.867168	0.419527	0	0.549928	0	0.524279	0.981647	0	0.65109	1.46393	0.638715	3.39611	3.8816	0.463113	0.893693	0.186178	0.62754	5.74386	5.77167	0.979645	1.15388	1.84175	1.70033	2.62696	1.95375	0	0.650662	0.452615	0.461143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00054197 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.137e-22
Identity = 48/128 (37.50%), Postives = 81/128 (63.28%), Query Frame = 2 
Query:  950 ESFHAIDLNGDGKISVHELMSAMNAAGEDVSAEDIEDIFDVIDLDGDGEISFEEFKDAMYEKMSQQTVDEDLIGAFEIFDDDGDGYISPTEIQLMFKKLGELISTDEAVEMMKDCDINKDGLIDFEEF 1333
            E+F   D +GDG I+  EL + M + G++ +  +++D+ + +D DG+G I F EF   M  KM     +E++  AF +FD DG+GYIS  E++ +   LGE ++ +E  EM+++ DI+ DG +++EEF
Sbjct:   15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of TCONS_00054197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.137e-2237.50Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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