TCONS_00053504 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053504
Unique Name	TCONS_00053504
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1062

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_232:89988..96555+
coding sequence from alignment at scaffold_232:89988..96555+

transcript sequence

>TCONS_00053504 ID=TCONS_00053504|Name=TCONS_00053504|organism=Clytia hemisphaerica|type=transcript|length=1062bp
AGGAAAGACAAGAAAAACGAGAAAAGGAGATAGATGACCTTCGAAACCAA
TTGAATGAATTAACTGAACGTTTTGAGAACACTCAAATTACTATCAAACA
ATTGACAGCTCAAAAACAACAAATGGACGAGCAATCAGTGAAAATGGAAA
CTTCAAACAAAGATGCTGAAAATGCATACCGTGTGAAAAAGAAAACGTTC
GATTTACTGCCCGAATCTGAAGAAAACCTCAACAAACTGATGCAACTTGT
TGAGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAGCAATGGGAAAAAC
ATCGTGCTCCACTTATTCAGAAATATCGAGAACTGAAGGAACAAAGCAAA
AATCGTCAATCCGAAGTAGAAACACGAATCGAACAAATTCGCGTTCTTCG
TGAAAAGATGAAATCAGTGACTGACGATACTAGAGACAAAGAAGAAATGC
TGAAGCAattgGTCAGCGAATATGAGAGTTTATCGAAAGATGTCAATCGT
TCATCATACACCAAACGTATACTGGATATCGTTGCAAGCATCAAAAAACA
AAGAGAACAGATTGCCAAGATTCTGCTTGATACAAAGACTTTACAAAAAG
ACATCAACTTCTTGACTGGCAAACTAGATCGAACTTTTACCGTTACGGAT
GAGCTCATCTTCAAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGCTTA
CAAACTATTGGCCAATCTTCACGAGACATTTGGTAATCTGGTGCAGACGG
TTGAGGAGACTGGGCTGATCATGCGTGAAACACGTGACCTTGAAGAGCAG
GTGGACAACATTAATGAGGATGAAATTCACCAAAACTTGACCAAGATCAG
CAAAGATTTGAAGCaaattaaagaagaaaacagtGAAATGATTTCCAAAT
TGAAGTCAAGAAAGtagaatgtttttttaatatatctaatcttgtttttt
tattagGCGAGGTCCACTTGATTCATTTTTGCTTTATCCTTTGATGGGTT
TGATTCTATGTACTTCATAATTTCTAGCTCTTCCTTCtcataaatatttt
atttgataCTTT

Run BLAST on NCBI

protein sequence of TCONS_00053504-protein

>TCONS_00053504-protein ID=TCONS_00053504-protein|Name=TCONS_00053504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
ERQEKREKEIDDLRNQLNELTERFENTQITIKQLTAQKQQMDEQSVKMET
SNKDAENAYRVKKKTFDLLPESEENLNKLMQLVENSSQKLVTLNEQWEKH
RAPLIQKYRELKEQSKNRQSEVETRIEQIRVLREKMKSVTDDTRDKEEML
KQLVSEYESLSKDVNRSSYTKRILDIVASIKKQREQIAKILLDTKTLQKD
INFLTGKLDRTFTVTDELIFKDAKKNEFSRKAYKLLANLHETFGNLVQTV
EETGLIMRETRDLEEQVDNINEDEIHQNLTKISKDLKQIKEENSEMISKL
KSRK

Run BLAST on NCBI

transcript from alignment at scaffold_232:89988..96555+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053504 ID=TCONS_00053504|Name=TCONS_00053504|organism=Clytia hemisphaerica|type=transcript|length=6568bp|location=Sequence derived from alignment at scaffold_232:89988..96555+ (Clytia hemisphaerica)
AGGAAAGACAAGAAAAACGAGAAAAGGAGATAGATGACCTTCGAAACCAA
TTGAATGAATTAACTGAACGTTTTGAGAACACTCAAATTACTATCAAACA
ATTGACAGCTCAAAAACAACAAGTAAGTAGAGACTTAAAAATATGTGATG
TCACATCCCTTAAACTTAAATCCTCCTAGGGGAAAAGGGAATTTCTAGTT
AATGAGTACCATAAAAACTCAAATACTTCAAAACTTCGTAGgccttatta
tttttttcggtTTTCTTGAATCGCATTCTTTCCTTTTAGCAACGAGTTTA
TTTACAACGACATTAACTTGTATTCAAAAATTAATTCTGGGTTTTGCACA
ATAGAAACATAACATTTGTAAGTGACACAAACATCTTCATTCTTTGAGAT
ATTGTTCAGTTTATTCGGGGTTTATTCCTGAAAGATAATTAATTCTCGGA
TTCTTTAATTTAGATGGACGAGCAATCAGTGAAAATGGAAACTTCAAACA
AAGATGCTGAAAATGCATACCGTGTGAAAAAGAAAACGTTCGATTTACTG
CCCGAATCTGAAGAAAACCTCAACAAACTGATGGTAATAATATATCATAT
GTACGGTCGGTACAGATTTCTCTTCGATCACTGCAAAAGTTTACCATTAA
ATACCTTAGATTGGCCAATATGGTCTTAGCTGTAAGTTGGTGGGAGCTGA
GCATAATTGCATATTGTTTTCGCTAAATAGACTTAGGTAGCGAATACTTT
TTGTTGGTTTtattattcttaatattttaaaaactgTGCTTATCAGGGTC
TCGTTTTATATGCACAGCCTATCAGTGTAAATTAGGTTTAAACTCAGAAA
ATCATTTCCATGTTGATGTAGTTATCATTTCTGTTTCCTTTTTCTTCTTT
AGCAACTTGTTGAGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAGCAA
TGGGAAAAACATCGTGCTCCACTTATTCAGAAATATCGAGAACTGAAGGA
ACAAAGCAAAAATCGTCAAGTATAAAGAATTTAATTTCCATCATACTAGA
AGATATTAATAGATGGGCTTTTCCTATCTTTTTGCTAAAAAACGAAGTTA
TTATTGAGATTGAAGTTTAATATCTAAGATTACTTGTTACTTTTATCGTA
ACTGATCTTGGACCATATTTCCAGATATATTTAGTTTTTTAATGACCTAG
TTAAAAAGTCTGAATCAACAATACAGATTTCAGTTACGTGTAGCGCCGAT
TtcattttatgactttattcTTTTCACTTCAGTCCGAAGTAGAAACACGA
ATCGAACAAATTCGCGTTCTTCGTGAAAAGATGAAATCAGTGACTGACGA
TACTAGAGACAAAGAAGAAATGCTGAAGCAattggtaaaaaaacttttca
taaagttttaaaaTCCCCTTGCCCTGGCCTTGTCTCTCTCTCTGATATTG
CGATTATTATTTTGACACTTTTGTCTCTAGTCTAACATGTTTGatttaag
aaaaagtaagtaaTGGTAAGGAAAACTTAAGGGCATTattataccgggtg
tgccacaaaataATCTGAACTTTTGAACTTTGACTTCTAAAAGTGATGGA
TTGATTCCCTCCTTTTAACCAAGTAGCTACGAGATAACCAAAACTACCTT
aaagttaaaggaagaaaatttggcgggaatttaataatttggcggatggt
tgaaaaagttttttctcgaggagatttaatttggtgaatggacgaaaaaa
ctaaatttggcgagaatttaatttggcgcttgctgaaaaatttatcctta
aaatggcgtaaaaaagcaaaaaaaatgcaaaaacaccttaaaagagagat
catgtttaaaaaaagtttaacttggcgggaatttaatttggcgaatggcg
gaaagaagaaattttggcgggaacttaattcgGCGGATTTTGGCCAAgcc
cgccaaatccgccaaattttctttccgccaaaatttcttcctttaagata
TATGGATAGGACTTGCTTTTTTACCTCTTTTGGACACATGTGTATACATG
CGTTTTATCATTACAATTTTTAGGTCAGCGAATATGAGAGTTTATCGAAA
GATGTCAATCGTTCATCATACACCAAACGTATACTGGATATCGTTGCAAG
CATCAAAAAACAAAGAGAACAGATTGCCAAGGTTTGACATTTTTACTtgc
tgaaagaaaagaaagaagtaTTATTTTGGTACAATGCCATTTTAGAACAA
CTCTTACTTTTATGAAAGATATCGATTTTTATAAAGCACTTTGAGGAGTG
TGACGCAGCAGAAACACCATTTCACAGAAGACATCCAAAGTTTTTATGGT
GTACACTTTATCTTTAGATTCTGCTTGATACAAAGACTTTACAAAAAGAC
ATCAACTTCTTGACTGGCAAACTAGATCGAACTTTTACCGTTACGGATGA
GCTCATCTTCAAGGTATGGTTTACTCCCCCCTCTTCCCAGTTCTCTTGCA
AAAGCCATCACACTAAGACGATTCAATACTACTGATCTACATATATTCTT
TGCAATGTGCTGCCTTTAAAAGACAGCGCTCCTAACGCCTTCAGTATTTG
TAATGGTTGAAATCCTAATATAAATCTAGCAATCATCAACTCTTCTCTGC
TCCACTGTGAAATAACATTTGAATGCTACACAATAAAGAGATAAAACACG
AGTGAACGGTCAAAATCTTGGAAACTCAAAGACTCGAAGGAataagaaat
caaacttttcgaatttagCATTCAGTCGTTTTGATAaacattaaaaatgt
tttttttggacctaccccagaggtcctttaaattaactgatgttcgttcg
tccgttcgtctgttcgtctgttaccaccttttctcaggattggatTTAGA
ACATTGCCTGTAGTACGCCCGTAGCCTAACGctcacgccataatttgcgc
cccaaaaattttctcgacacacacacacacacacgcACATAGAAAGGCTA
TTGTAATACTTttgctatgcgaaattaataataatCATCTTCTCTGTTTT
CCATTTTAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGCTTACAAACT
ATTGGCCAATCTTCACGAGgtttaaaaacttttgtttcAAGATAATACTG
ATGAATTAATAGGCTtcatttctgaaaatatttgaaaccccCTATCTAAC
AGGCAAAGTTATTTTGGTGTTCACCAATTGATGGTGATGAAGTTTTGTGT
CAGCTTGATGTTTAAACGTCCTTCTATTACAGATATTATCTCATATCATG
AATGTAACGAGAAGCTTTCTCATCTTTTCTGGAAGCTCTCTTGTATAATT
TTGCAAAATCATAACGAGACATAATTACAGTTTACTCTCGCTAATTCTAA
CTCAAATGGGGAATGTTATTTGTTCGAaatacagagagattcgaattatg
gagagtttttaagagggtttctcttTTACGGgaactgagaattagttcga
attataaatagaaagattccaaaaatataagtTTGAATTATAGTAGCAGT
GGGCTATagagactttttttttcaaaattaagtttgcataatttttttgg
tcTGTTGGGACCCAAATAACACAAATCtgagatattttttgattttttca
attttgacggtTCTCCGGCCTTTTTTATGCCCGAAATGGGCCAATTTCGG
GCATTTTTGCCTGGATAAAAAACCTAGAACCTGTTCTGTTGGTGCTACCA
CCCTAccaaattaggcttaaaatattccttggaaaaaactaggattagaa
tgtaacaattatatacctctaccATATACATAGACTTCAAATGATTAGGT
ATTTAggccaaaattgaccgaaaCCACTAAAATCTGCTCTGTTGCTGCTA
CAAgcctcaaattaggcttaaaatattccttggaaaaaagtaggattgga
atgtaacaattatatacctctagcataaatataaaatttaaaaattcagg
tatttaggccaaaattgaccgaaaaCAGGGGAAAACAGGGTTTGCTTGGG
AATAAAAGCTAAAATCTTTTCTGATGGTGCTATAAACCTCAacttaggct
taaaatgttctttggaaaaaagtaggatgagaatgtaacaattatatacc
tctaccatatgtatataaaattcaaagaattaGGTATTTAGGCTAAAACT
GACCGAAATCGGGGGAAAAcgaggttttgcctggaaataaaacctaaaat
ctgttctgttggtgctacaaacctcaaattaggcttaaaatgttctttgg
aaGAAAGTAGGATTGGAAAGTTACAATTATATCACTTGATCacctgaaaa
aaattgtaaaaaaagggAATTTGTATCATAGGGCAAAAATTGCTAGTCAC
AGGGGTAGCTTCTTCTTAGTCTAGGTGAAAGATAGCTTTAAAAAGTACAC
AAgtctttaatttttcaagtctGACTTTTTGAAGCTATTGTATTGcatat
atataaaaaagaagTTATTCCATTGCTAAGACTGTAAGATGTTCCAAATT
GCAAATGATTCTTGACTGAATGAATTGATTGCAAGGCTTTTGACACAACA
GTCTCTAAAACGGAACAGACAAAAccttttaaagttttctttgttGCATT
GTAAGATTTTCAAgacatttcattgcttttattCATAAAGaatacattac
attacattataATTTTAGTTAATTTTTTGACGTTGACAGTTCACAGTTTA
TGTTGATTCTATTGTATACACATCTGAGACGAATCTTCATTTTGTTGATT
TAGTAGTGAAGTCTTACAGAAATTGATATTgatagtttgttttgattttc
atttcagatagaaaaatacaaagatttaaaagaaataacaaTATGAGACC
AACAAAAGGATTGTACTTTTTAAAGCTATCTTTCACCTAGATAAGAAGAA
GCTACCCCTGTGAATAGCAACTTTTGCCCTATGATAGGATACAAATTCcc
ctttttcacaattttttcagGTGATCAAGTGATATAATTGTAAATTTCCG
ATACTACTTTCttccaaagaacattttaagcctaatttgaggtttgtagc
accaacagaacagattttaggttttatttcaAGGCAAAACCCTGTTTTCC
CCCGATTTCAGTCAGTTTTGGCCTAAATACCtaattctttgaattttata
tatatggtagaggtatataattgttacattctcatcctacttttttccaa
agaacattttaagcctaagtTGAGGTTTATAGCACAATCAGAACAGATTT
TAGCTTTTATTCCCAAGCAAACCCCGTTTTTCCATGTTTTCGGTCAATTA
TGGCCTAAATAcctgaatttttaaattttatatttatgctagaggtatat
aattgttacattccaatcctacttttttccaatgAATATTTTAAGCCTAG
TTTGAGGCTTGTAGCAgcaacagaacagattttagattttttcccaggca
aaaccctttttttttagtggtttcggtcaattttggccTAAATACCTAAT
CATTTGAAGTCTATGTATATggtagaggtatataattgttacattctagt
CCTAGTTTTTtccaaggaatattttaagcCCAATTTGAGGGTGGTAGCAC
CAACAGAACAGGTTCTAGGTTTTTTATCCAGGCAAAAATGCCCGAAATTG
GCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATTTCGGGCATAAAAAAGGCCGGAGAAccg
tcaaaaattgaaaaaatcaaaaaatatctcaGATTTGTGTTATTTGGGTC
CCAAcggaccaaaaaaaattatgcaaacttaatttcgaaaaaaaaagtct
ctatagcccactgctaattatagatttataaagcccgaagggctagatgt
cgtgcttaaAGCCGTCGCaggtaaaaaaagtgaatatcgtaaaaaatatt
gttcctattgttttcgaaaatcttctgatcggtcaagcgctgaaattcta
ttgtaatatcacgtgacctaggtagaatttcctacctaaccacggcacac
ttttcatcaaaagtacgccatctagcccttcgggctttataaatctatgg
tttgAATAGGCAAGAGTCTACTGTGTCTTAGTTTTATGGCCGTTGCGAAC
TTTATCACTttgttttacatattttttatagACATTTGGTAATCTGGTGC
AGACGGTTGAGGAGACTGGGCTGATCATGCGTGAAACACGTGACCTTGAA
GAGCAGGTGGACAACATTAATGAGGATGAAATTCACCAAAACTTGACCAA
GATCAGCAAAGATTTGAAGCaaattaaagaagaaaacagtGAAATGATTT
CCAAATTGAAGTCAAGAAAGtagaatgtttttttaatatatctaatcttg
tttttttattagGCGAGGTCCACTTGATTCATTTTTGCTTTATCCTTTGA
TGGGTTTGATTCTATGTACTTCATAATTTCTAGCTCTTCCTTCtcataaa
tattttatttgataCTTT

Coding sequence (CDS) from alignment at scaffold_232:89988..96555+

>TCONS_00053504 ID=TCONS_00053504|Name=TCONS_00053504|organism=Clytia hemisphaerica|type=CDS|length=7320bp|location=Sequence derived from alignment at scaffold_232:89988..96555+ (Clytia hemisphaerica)
GAAAGACAAGAAAAACGAGAAAAGGAGATAGATGACCTTCGAAACCAATT
GAATGAATTAACTGAACGTTTTGAGAACACTCAAATTACTATCAAACAAT
TGACAGCTCAAAAACAACAAATGGACGAGCAATCAGTGAAAATGGAAACT
TCAAACAAAGATGCTGAAAATGCATACCGTGTGAAAAAGAAAACGTTCGA
TTTACTGCCCGAATCTGAAGAAAACCTCAACAAACTGATGCAACTTGTTG
AGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAGCAATGGGAAAAACAT
CGTGCTCCACTTATTCAGAAATATCGAGAACTGAAGGAACAAAGCAAAAA
TCGTCAATCCGAAGTAGAAACACGAATCGAACAAATTCGCGTTCTTCGTG
AAAAGATGAAATCAGTGACTGACGATACTAGAGACAAAGAAGAAATGCTG
AAGCAattgGTCAGCGAATATGAGAGTTTATCGAAAGATGTCAATCGTTC
ATCATACACCAAACGTATACTGGATATCGTTGCAAGCATCAAAAAACAAA
GAGAACAGATTGCCAAGATTCTGCTTGATACAAAGACTTTACAAAAAGAC
ATCAACTTCTTGACTGGCAAACTAGATCGAACTTTTACCGTTACGGATGA
GCTCATCTTCAAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGCTTACA
AACTATTGGCCAATCTTCACGAGACATTTGGTAATCTGGTGCAGACGGTT
GAGGAGACTGGGCTGATCATGCGTGAAACACGTGACCTTGAAGAGCAGGT
GGACAACATTAATGAGGATGAAATTCACCAAAACTTGACCAAGATCAGCA
AAGATTTGAAGCaaattaaagaagaaaacagtGAAATGATTTCCAAATTG
AAGTCAAGAAAGtagGAAAGACAAGAAAAACGAGAAAAGGAGATAGATGA
CCTTCGAAACCAATTGAATGAATTAACTGAACGTTTTGAGAACACTCAAA
TTACTATCAAACAATTGACAGCTCAAAAACAACAAATGGACGAGCAATCA
GTGAAAATGGAAACTTCAAACAAAGATGCTGAAAATGCATACCGTGTGAA
AAAGAAAACGTTCGATTTACTGCCCGAATCTGAAGAAAACCTCAACAAAC
TGATGCAACTTGTTGAGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAG
CAATGGGAAAAACATCGTGCTCCACTTATTCAGAAATATCGAGAACTGAA
GGAACAAAGCAAAAATCGTCAATCCGAAGTAGAAACACGAATCGAACAAA
TTCGCGTTCTTCGTGAAAAGATGAAATCAGTGACTGACGATACTAGAGAC
AAAGAAGAAATGCTGAAGCAattgGTCAGCGAATATGAGAGTTTATCGAA
AGATGTCAATCGTTCATCATACACCAAACGTATACTGGATATCGTTGCAA
GCATCAAAAAACAAAGAGAACAGATTGCCAAGATTCTGCTTGATACAAAG
ACTTTACAAAAAGACATCAACTTCTTGACTGGCAAACTAGATCGAACTTT
TACCGTTACGGATGAGCTCATCTTCAAGGATGCTAAAAAGAACGAATTCA
GTCGTAAAGCTTACAAACTATTGGCCAATCTTCACGAGACATTTGGTAAT
CTGGTGCAGACGGTTGAGGAGACTGGGCTGATCATGCGTGAAACACGTGA
CCTTGAAGAGCAGGTGGACAACATTAATGAGGATGAAATTCACCAAAACT
TGACCAAGATCAGCAAAGATTTGAAGCaaattaaagaagaaaacagtGAA
ATGATTTCCAAATTGAAGTCAAGAAAGtagGAAAGACAAGAAAAACGAGA
AAAGGAGATAGATGACCTTCGAAACCAATTGAATGAATTAACTGAACGTT
TTGAGAACACTCAAATTACTATCAAACAATTGACAGCTCAAAAACAACAA
ATGGACGAGCAATCAGTGAAAATGGAAACTTCAAACAAAGATGCTGAAAA
TGCATACCGTGTGAAAAAGAAAACGTTCGATTTACTGCCCGAATCTGAAG
AAAACCTCAACAAACTGATGCAACTTGTTGAGAACAGTTCCCAGAAGTTG
GTCACTCTAAACGAGCAATGGGAAAAACATCGTGCTCCACTTATTCAGAA
ATATCGAGAACTGAAGGAACAAAGCAAAAATCGTCAATCCGAAGTAGAAA
CACGAATCGAACAAATTCGCGTTCTTCGTGAAAAGATGAAATCAGTGACT
GACGATACTAGAGACAAAGAAGAAATGCTGAAGCAattgGTCAGCGAATA
TGAGAGTTTATCGAAAGATGTCAATCGTTCATCATACACCAAACGTATAC
TGGATATCGTTGCAAGCATCAAAAAACAAAGAGAACAGATTGCCAAGATT
CTGCTTGATACAAAGACTTTACAAAAAGACATCAACTTCTTGACTGGCAA
ACTAGATCGAACTTTTACCGTTACGGATGAGCTCATCTTCAAGGATGCTA
AAAAGAACGAATTCAGTCGTAAAGCTTACAAACTATTGGCCAATCTTCAC
GAGACATTTGGTAATCTGGTGCAGACGGTTGAGGAGACTGGGCTGATCAT
GCGTGAAACACGTGACCTTGAAGAGCAGGTGGACAACATTAATGAGGATG
AAATTCACCAAAACTTGACCAAGATCAGCAAAGATTTGAAGCaaattaaa
gaagaaaacagtGAAATGATTTCCAAATTGAAGTCAAGAAAGtagGAAAG
ACAAGAAAAACGAGAAAAGGAGATAGATGACCTTCGAAACCAATTGAATG
AATTAACTGAACGTTTTGAGAACACTCAAATTACTATCAAACAATTGACA
GCTCAAAAACAACAAATGGACGAGCAATCAGTGAAAATGGAAACTTCAAA
CAAAGATGCTGAAAATGCATACCGTGTGAAAAAGAAAACGTTCGATTTAC
TGCCCGAATCTGAAGAAAACCTCAACAAACTGATGCAACTTGTTGAGAAC
AGTTCCCAGAAGTTGGTCACTCTAAACGAGCAATGGGAAAAACATCGTGC
TCCACTTATTCAGAAATATCGAGAACTGAAGGAACAAAGCAAAAATCGTC
AATCCGAAGTAGAAACACGAATCGAACAAATTCGCGTTCTTCGTGAAAAG
ATGAAATCAGTGACTGACGATACTAGAGACAAAGAAGAAATGCTGAAGCA
attgGTCAGCGAATATGAGAGTTTATCGAAAGATGTCAATCGTTCATCAT
ACACCAAACGTATACTGGATATCGTTGCAAGCATCAAAAAACAAAGAGAA
CAGATTGCCAAGATTCTGCTTGATACAAAGACTTTACAAAAAGACATCAA
CTTCTTGACTGGCAAACTAGATCGAACTTTTACCGTTACGGATGAGCTCA
TCTTCAAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGCTTACAAACTA
TTGGCCAATCTTCACGAGACATTTGGTAATCTGGTGCAGACGGTTGAGGA
GACTGGGCTGATCATGCGTGAAACACGTGACCTTGAAGAGCAGGTGGACA
ACATTAATGAGGATGAAATTCACCAAAACTTGACCAAGATCAGCAAAGAT
TTGAAGCaaattaaagaagaaaacagtGAAATGATTTCCAAATTGAAGTC
AAGAAAGtagGAAAGACAAGAAAAACGAGAAAAGGAGATAGATGACCTTC
GAAACCAATTGAATGAATTAACTGAACGTTTTGAGAACACTCAAATTACT
ATCAAACAATTGACAGCTCAAAAACAACAAATGGACGAGCAATCAGTGAA
AATGGAAACTTCAAACAAAGATGCTGAAAATGCATACCGTGTGAAAAAGA
AAACGTTCGATTTACTGCCCGAATCTGAAGAAAACCTCAACAAACTGATG
CAACTTGTTGAGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAGCAATG
GGAAAAACATCGTGCTCCACTTATTCAGAAATATCGAGAACTGAAGGAAC
AAAGCAAAAATCGTCAATCCGAAGTAGAAACACGAATCGAACAAATTCGC
GTTCTTCGTGAAAAGATGAAATCAGTGACTGACGATACTAGAGACAAAGA
AGAAATGCTGAAGCAattgGTCAGCGAATATGAGAGTTTATCGAAAGATG
TCAATCGTTCATCATACACCAAACGTATACTGGATATCGTTGCAAGCATC
AAAAAACAAAGAGAACAGATTGCCAAGATTCTGCTTGATACAAAGACTTT
ACAAAAAGACATCAACTTCTTGACTGGCAAACTAGATCGAACTTTTACCG
TTACGGATGAGCTCATCTTCAAGGATGCTAAAAAGAACGAATTCAGTCGT
AAAGCTTACAAACTATTGGCCAATCTTCACGAGACATTTGGTAATCTGGT
GCAGACGGTTGAGGAGACTGGGCTGATCATGCGTGAAACACGTGACCTTG
AAGAGCAGGTGGACAACATTAATGAGGATGAAATTCACCAAAACTTGACC
AAGATCAGCAAAGATTTGAAGCaaattaaagaagaaaacagtGAAATGAT
TTCCAAATTGAAGTCAAGAAAGtagGAAAGACAAGAAAAACGAGAAAAGG
AGATAGATGACCTTCGAAACCAATTGAATGAATTAACTGAACGTTTTGAG
AACACTCAAATTACTATCAAACAATTGACAGCTCAAAAACAACAAATGGA
CGAGCAATCAGTGAAAATGGAAACTTCAAACAAAGATGCTGAAAATGCAT
ACCGTGTGAAAAAGAAAACGTTCGATTTACTGCCCGAATCTGAAGAAAAC
CTCAACAAACTGATGCAACTTGTTGAGAACAGTTCCCAGAAGTTGGTCAC
TCTAAACGAGCAATGGGAAAAACATCGTGCTCCACTTATTCAGAAATATC
GAGAACTGAAGGAACAAAGCAAAAATCGTCAATCCGAAGTAGAAACACGA
ATCGAACAAATTCGCGTTCTTCGTGAAAAGATGAAATCAGTGACTGACGA
TACTAGAGACAAAGAAGAAATGCTGAAGCAattgGTCAGCGAATATGAGA
GTTTATCGAAAGATGTCAATCGTTCATCATACACCAAACGTATACTGGAT
ATCGTTGCAAGCATCAAAAAACAAAGAGAACAGATTGCCAAGATTCTGCT
TGATACAAAGACTTTACAAAAAGACATCAACTTCTTGACTGGCAAACTAG
ATCGAACTTTTACCGTTACGGATGAGCTCATCTTCAAGGATGCTAAAAAG
AACGAATTCAGTCGTAAAGCTTACAAACTATTGGCCAATCTTCACGAGAC
ATTTGGTAATCTGGTGCAGACGGTTGAGGAGACTGGGCTGATCATGCGTG
AAACACGTGACCTTGAAGAGCAGGTGGACAACATTAATGAGGATGAAATT
CACCAAAACTTGACCAAGATCAGCAAAGATTTGAAGCaaattaaagaaga
aaacagtGAAATGATTTCCAAATTGAAGTCAAGAAAGtagGAAAGACAAG
AAAAACGAGAAAAGGAGATAGATGACCTTCGAAACCAATTGAATGAATTA
ACTGAACGTTTTGAGAACACTCAAATTACTATCAAACAATTGACAGCTCA
AAAACAACAAATGGACGAGCAATCAGTGAAAATGGAAACTTCAAACAAAG
ATGCTGAAAATGCATACCGTGTGAAAAAGAAAACGTTCGATTTACTGCCC
GAATCTGAAGAAAACCTCAACAAACTGATGCAACTTGTTGAGAACAGTTC
CCAGAAGTTGGTCACTCTAAACGAGCAATGGGAAAAACATCGTGCTCCAC
TTATTCAGAAATATCGAGAACTGAAGGAACAAAGCAAAAATCGTCAATCC
GAAGTAGAAACACGAATCGAACAAATTCGCGTTCTTCGTGAAAAGATGAA
ATCAGTGACTGACGATACTAGAGACAAAGAAGAAATGCTGAAGCAattgG
TCAGCGAATATGAGAGTTTATCGAAAGATGTCAATCGTTCATCATACACC
AAACGTATACTGGATATCGTTGCAAGCATCAAAAAACAAAGAGAACAGAT
TGCCAAGATTCTGCTTGATACAAAGACTTTACAAAAAGACATCAACTTCT
TGACTGGCAAACTAGATCGAACTTTTACCGTTACGGATGAGCTCATCTTC
AAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGCTTACAAACTATTGGC
CAATCTTCACGAGACATTTGGTAATCTGGTGCAGACGGTTGAGGAGACTG
GGCTGATCATGCGTGAAACACGTGACCTTGAAGAGCAGGTGGACAACATT
AATGAGGATGAAATTCACCAAAACTTGACCAAGATCAGCAAAGATTTGAA
GCaaattaaagaagaaaacagtGAAATGATTTCCAAATTGAAGTCAAGAA
AGtagGAAAGACAAGAAAAACGAGAAAAGGAGATAGATGACCTTCGAAAC
CAATTGAATGAATTAACTGAACGTTTTGAGAACACTCAAATTACTATCAA
ACAATTGACAGCTCAAAAACAACAAATGGACGAGCAATCAGTGAAAATGG
AAACTTCAAACAAAGATGCTGAAAATGCATACCGTGTGAAAAAGAAAACG
TTCGATTTACTGCCCGAATCTGAAGAAAACCTCAACAAACTGATGCAACT
TGTTGAGAACAGTTCCCAGAAGTTGGTCACTCTAAACGAGCAATGGGAAA
AACATCGTGCTCCACTTATTCAGAAATATCGAGAACTGAAGGAACAAAGC
AAAAATCGTCAATCCGAAGTAGAAACACGAATCGAACAAATTCGCGTTCT
TCGTGAAAAGATGAAATCAGTGACTGACGATACTAGAGACAAAGAAGAAA
TGCTGAAGCAattgGTCAGCGAATATGAGAGTTTATCGAAAGATGTCAAT
CGTTCATCATACACCAAACGTATACTGGATATCGTTGCAAGCATCAAAAA
ACAAAGAGAACAGATTGCCAAGATTCTGCTTGATACAAAGACTTTACAAA
AAGACATCAACTTCTTGACTGGCAAACTAGATCGAACTTTTACCGTTACG
GATGAGCTCATCTTCAAGGATGCTAAAAAGAACGAATTCAGTCGTAAAGC
TTACAAACTATTGGCCAATCTTCACGAGACATTTGGTAATCTGGTGCAGA
CGGTTGAGGAGACTGGGCTGATCATGCGTGAAACACGTGACCTTGAAGAG
CAGGTGGACAACATTAATGAGGATGAAATTCACCAAAACTTGACCAAGAT
CAGCAAAGATTTGAAGCaaattaaagaagaaaacagtGAAATGATTTCCA
AATTGAAGTCAAGAAAGtag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033776	XLOC_033776	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053504-protein	TCONS_00053504-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_232	supercontig	scaffold_232:89988..96555 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.2862	49.9275	14.2219	10.2281	29.9514	21.9838	34.1156	35.9435	30.7726	29.5644	29.2016	22.7693	24.8399	24.4463	36.9608	46.4571	41.1828	46.0833	28.3405	30.3965	29.1144	26.7739	41.5842	39.5836	22.4616	23.6731	30.9676	27.2673	46.0712	37.9089

Blast

[Close]

BLAST of TCONS_00053504 vs. Swiss-Prot (Human)
Match: CCD22 (Coiled-coil domain-containing protein 22 OS=Homo sapiens GN=CCDC22 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.361e-80
Identity = 133/295 (45.08%), Postives = 200/295 (67.80%), Query Frame = 3

Query:   21 EKEIDDLRNQLNELTERFENTQITIKQLTAQKQQMDEQSVKMETSNKDAENAYRVKKKTFDLLPESEENLNKLMQLVENSSQKLVTLNEQWEKHRAPLIQKYRELKEQSKNRQSEVETRIEQIRVLREKMKSVTDDTRDKEEMLKQLVSEYESLSKDVNRSSYTKRILDIVASIKKQREQIAKILLDTKTLQKDINFLTGKLDRTFTVTDELIFKDAKKNEFSRKAYKLLANLHETFGNLVQTVEETGLIMRETRDLEEQVDNINEDEIHQNLTKISKDLKQIKEENSEMISKLK 905
            E+E++ LR QL  +    E  +  +K L     Q + +    + S  + E A R+K +  +LLP+   NL KL  +VENS+Q+++ L  QWEKHR PL+ +YR L++    R+ E   R+ +I+ L + +++  ++ R KEE+ KQL+SE E+L +DV+R +YT+RIL+IV +I+KQ+E+I KIL DTK LQK+IN L+GKLDRTF VTDEL+FKDAKK++  RKAYK LA LHE    L+QT+E+TG IMRE RDLEEQ++     +   NL KI +D + +++EN+ ++ +++
Sbjct:  331 EQELESLREQLEGVNRSIEEVEADMKTLGVSFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSAQRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETELGKKTLSNLEKIREDYRALRQENAGLLGRVR 625

The following BLAST results are available for this feature:

BLAST of TCONS_00053504 vs. Swiss-Prot (Human)

BLAST of TCONS_00053504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD22	2.361e-80	45.08	Coiled-coil domain-containing protein 22 OS=Homo s...	[more]

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TCONS_00053504 (transcript) - C. hemisphaerica