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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053485 ID=TCONS_00053485|Name=TCONS_00053485|organism=Clytia hemisphaerica|type=transcript|length=1990bp
TTCGAACTCAACATGATCCGTGGTGATTTTTTCGTCAATGAAAGTTATAA
TGGTTGATATAGTATCCGTATAATGGAGATTGTGAATATTGTATGCAGTG
ATGGTGAGGTTTACTGATTGGTCATGCTTCGTTGGCATTTCATGAAAATA
TACCTCTCCATGCTCATTTATGGTGAAAACAGTTTCTGCAACATTCGTTT
GTAAGTTATAAAGAACCAGGCAATTGTTTTCTGTTGGGTATGCTGCGATG
GTTTTAGAGAGTTCTGCTCTATCGAGTTCAATTTTCCGAGGATAGGTCGA
AATTTTCGGTTGACACGGGCTTTTTCTGGAGACCAATTTCATCGAAAGGT
AACCGAAAGTTTGTTTGGTAGGTGTTTGATGGTCGGTTGCGGAAATTGTT
AAGTTGATAAAACCGACCTGGTCTAATGGTAATGGTTTAGTCAGTAATAT
GACACCAGTGTATGAAATATTAAAATGATTACTAAGCATCGATGGAGCTA
AATTGTACGTAATATTCCCGCCGTCGCTGAAGTCTGTGTCAGTTGCGTGC
ATCGTGGCTACGTATGAACCTTCCGGAGATCGTACGTAGAATTCCGTTAC
GTAATTTTGCTGGTCAAAATTTGGTGGGTGATTGTTTATGTTTTCAACGT
CAATGAAAAGTTTAGCGTAAGCTTCATACAAACCGTCCGTCGCTTTTAGA
TTTAGCTCAAAATATGGATAACTTGTGTACTCGATTGATTGTTCGATGGT
CAAATAATATCGGATAGCCTTTTTCGATGTCTGGTCTATTTTTTTGTTAA
GTTGAAATGGTTTGACAGTGAAGATGGAGTTATAGTTCAGAAGCTTTAAT
GAGAAATTCCCTTCGACGGAATCTTCATCGTGTATAGTGACGTATGTTAA
GAATTGTCCGATAGGATTATGTTCTTTGATGGTGAGATGTTGTTTTGGGA
TGGAAATTGTCGATGGATGATTATTAGAGTCTGTGATTGAGATCCTGAGC
GATGCCGTGGAAGAGAGGCTTGGTGAGCCATGGTCCTTAGCCGTGATGGT
CAAATCAAAGAATGTGTTTTGCTCATACAACAGTCTCTGTATCAAACGAA
CAACACCGGTATGAGAGTCAATCATGAAATAATTATCTCCCAAATTTTCT
TTACTACTGGTTAACGTGTATAAAATCTCTGCGTTATCTCCATCATCAAG
ATCGGTAGCGTTCATGGAAATAAGTGACGAGTTGACTTCTGTTGCTTCGG
AGATGCTTAAGAACATATTAGTGTTTGGGAATACTGGTTGGTTGTCATTG
ATATCTTGGACGGTGATATTGATTATTGCTTTGGAAGAAAGAGAAGGTGA
ACCACAGTCTGTTGTCATCAGTTCGATCACGATGAATGGCTCATCTTCAC
GATCTAGAGGTTCTTCTAAAACTAAGCTGAAATATTTACTGTCTTTTTTA
TTGTAGACGATGGAAAAGCGAGATTCGTTGTTTTTCAATGTGACGTTTGA
GATCATTCCATTGTAGCCAGAATCTTTGTCAACTGGTGAGAGCAGGCTCA
ACGAGTGACCTACTTTGAAGTACTCCGAGATTGAGAGTTGTTTGGTGGAT
GGATGGAATTCTGGATAATGGTCGTTCACGTCGATGATGTCGATTATAAT
CTGACTGAGTGATTGTTTGGAGAATTCGTTCACAATGAAACAACGAATCG
ATTCAATTTCTTCACGGTCTATTGGAGAGATTGTAGATACAATCCCGGTG
GATACGTTAACGTTTACATATAAAGGGTCAATATTACGCACAAACACAAC
TGTTCCGTTTTCAATCGTTGGTATTCTCCCTAATGTCAATGGTAGTAGCT
CATGTTCACGGACTTGGAACCGATAGGAAAAGTAAGCTCTAACGATAGGT
AATGTCAGTGCTAAACAAAGGAGGATGAGAATCTGTTGTTGCGCCATTTT
GATTTCTCATGCCGATTTTTCTTATTACTTCTTATttctg Run BLAST on NCBI protein sequence of TCONS_00053485-protein >TCONS_00053485-protein ID=TCONS_00053485-protein|Name=TCONS_00053485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MAQQQILILLCLALTLPIVRAYFSYRFQVREHELLPLTLGRIPTIENGTV
VFVRNIDPLYVNVNVSTGIVSTISPIDREEIESIRCFIVNEFSKQSLSQI
IIDIIDVNDHYPEFHPSTKQLSISEYFKVGHSLSLLSPVDKDSGYNGMIS
NVTLKNNESRFSIVYNKKDSKYFSLVLEEPLDREDEPFIVIELMTTDCGS
PSLSSKAIINITVQDINDNQPVFPNTNMFLSISEATEVNSSLISMNATDL
DDGDNAEILYTLTSSKENLGDNYFMIDSHTGVVRLIQRLLYEQNTFFDLT
ITAKDHGSPSLSSTASLRISITDSNNHPSTISIPKQHLTIKEHNPIGQFL
TYVTIHDEDSVEGNFSLKLLNYNSIFTVKPFQLNKKIDQTSKKAIRYYLT
IEQSIEYTSYPYFELNLKATDGLYEAYAKLFIDVENINNHPPNFDQQNYV
TEFYVRSPEGSYVATMHATDTDFSDGGNITYNLAPSMLSNHFNISYTGVI
LLTKPLPLDQVGFINLTISATDHQTPTKQTFGYLSMKLVSRKSPCQPKIS
TYPRKIELDRAELSKTIAAYPTENNCLVLYNLQTNVAETVFTINEHGEVY
FHEMPTKHDQSVNLTITAYNIHNLHYTDTISTIITFIDEKITTDHVEFE Run BLAST on NCBI transcript from alignment at scaffold_231:170301..172290 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053485 ID=TCONS_00053485|Name=TCONS_00053485|organism=Clytia hemisphaerica|type=transcript|length=1990bp|location=Sequence derived from alignment at scaffold_231:170301..172290 (Clytia hemisphaerica)
cagaaATAAGAAGTAATAAGAAAAATCGGCATGAGAAATCAAAATGGCGC
AACAACAGATTCTCATCCTCCTTTGTTTAGCACTGACATTACCTATCGTT
AGAGCTTACTTTTCCTATCGGTTCCAAGTCCGTGAACATGAGCTACTACC
ATTGACATTAGGGAGAATACCAACGATTGAAAACGGAACAGTTGTGTTTG
TGCGTAATATTGACCCTTTATATGTAAACGTTAACGTATCCACCGGGATT
GTATCTACAATCTCTCCAATAGACCGTGAAGAAATTGAATCGATTCGTTG
TTTCATTGTGAACGAATTCTCCAAACAATCACTCAGTCAGATTATAATCG
ACATCATCGACGTGAACGACCATTATCCAGAATTCCATCCATCCACCAAA
CAACTCTCAATCTCGGAGTACTTCAAAGTAGGTCACTCGTTGAGCCTGCT
CTCACCAGTTGACAAAGATTCTGGCTACAATGGAATGATCTCAAACGTCA
CATTGAAAAACAACGAATCTCGCTTTTCCATCGTCTACAATAAAAAAGAC
AGTAAATATTTCAGCTTAGTTTTAGAAGAACCTCTAGATCGTGAAGATGA
GCCATTCATCGTGATCGAACTGATGACAACAGACTGTGGTTCACCTTCTC
TTTCTTCCAAAGCAATAATCAATATCACCGTCCAAGATATCAATGACAAC
CAACCAGTATTCCCAAACACTAATATGTTCTTAAGCATCTCCGAAGCAAC
AGAAGTCAACTCGTCACTTATTTCCATGAACGCTACCGATCTTGATGATG
GAGATAACGCAGAGATTTTATACACGTTAACCAGTAGTAAAGAAAATTTG
GGAGATAATTATTTCATGATTGACTCTCATACCGGTGTTGTTCGTTTGAT
ACAGAGACTGTTGTATGAGCAAAACACATTCTTTGATTTGACCATCACGG
CTAAGGACCATGGCTCACCAAGCCTCTCTTCCACGGCATCGCTCAGGATC
TCAATCACAGACTCTAATAATCATCCATCGACAATTTCCATCCCAAAACA
ACATCTCACCATCAAAGAACATAATCCTATCGGACAATTCTTAACATACG
TCACTATACACGATGAAGATTCCGTCGAAGGGAATTTCTCATTAAAGCTT
CTGAACTATAACTCCATCTTCACTGTCAAACCATTTCAACTTAACAAAAA
AATAGACCAGACATCGAAAAAGGCTATCCGATATTATTTGACCATCGAAC
AATCAATCGAGTACACAAGTTATCCATATTTTGAGCTAAATCTAAAAGCG
ACGGACGGTTTGTATGAAGCTTACGCTAAACTTTTCATTGACGTTGAAAA
CATAAACAATCACCCACCAAATTTTGACCAGCAAAATTACGTAACGGAAT
TCTACGTACGATCTCCGGAAGGTTCATACGTAGCCACGATGCACGCAACT
GACACAGACTTCAGCGACGGCGGGAATATTACGTACAATTTAGCTCCATC
GATGCTTAGTAATCATTTTAATATTTCATACACTGGTGTCATATTACTGA
CTAAACCATTACCATTAGACCAGGTCGGTTTTATCAACTTAACAATTTCC
GCAACCGACCATCAAACACCTACCAAACAAACTTTCGGTTACCTTTCGAT
GAAATTGGTCTCCAGAAAAAGCCCGTGTCAACCGAAAATTTCGACCTATC
CTCGGAAAATTGAACTCGATAGAGCAGAACTCTCTAAAACCATCGCAGCA
TACCCAACAGAAAACAATTGCCTGGTTCTTTATAACTTACAAACGAATGT
TGCAGAAACTGTTTTCACCATAAATGAGCATGGAGAGGTATATTTTCATG
AAATGCCAACGAAGCATGACCAATCAGTAAACCTCACCATCACTGCATAC
AATATTCACAATCTCCATTATACGGATACTATATCAACCATTATAACTTT
CATTGACGAAAAAATCACCACGGATCATGTTGAGTTCGAA Coding sequence (CDS) from alignment at scaffold_231:170301..172290 >TCONS_00053485 ID=TCONS_00053485|Name=TCONS_00053485|organism=Clytia hemisphaerica|type=CDS|length=1947bp|location=Sequence derived from alignment at scaffold_231:170301..172290 (Clytia hemisphaerica)
ATGGCGCAACAACAGATTCTCATCCTCCTTTGTTTAGCACTGACATTACC
TATCGTTAGAGCTTACTTTTCCTATCGGTTCCAAGTCCGTGAACATGAGC
TACTACCATTGACATTAGGGAGAATACCAACGATTGAAAACGGAACAGTT
GTGTTTGTGCGTAATATTGACCCTTTATATGTAAACGTTAACGTATCCAC
CGGGATTGTATCTACAATCTCTCCAATAGACCGTGAAGAAATTGAATCGA
TTCGTTGTTTCATTGTGAACGAATTCTCCAAACAATCACTCAGTCAGATT
ATAATCGACATCATCGACGTGAACGACCATTATCCAGAATTCCATCCATC
CACCAAACAACTCTCAATCTCGGAGTACTTCAAAGTAGGTCACTCGTTGA
GCCTGCTCTCACCAGTTGACAAAGATTCTGGCTACAATGGAATGATCTCA
AACGTCACATTGAAAAACAACGAATCTCGCTTTTCCATCGTCTACAATAA
AAAAGACAGTAAATATTTCAGCTTAGTTTTAGAAGAACCTCTAGATCGTG
AAGATGAGCCATTCATCGTGATCGAACTGATGACAACAGACTGTGGTTCA
CCTTCTCTTTCTTCCAAAGCAATAATCAATATCACCGTCCAAGATATCAA
TGACAACCAACCAGTATTCCCAAACACTAATATGTTCTTAAGCATCTCCG
AAGCAACAGAAGTCAACTCGTCACTTATTTCCATGAACGCTACCGATCTT
GATGATGGAGATAACGCAGAGATTTTATACACGTTAACCAGTAGTAAAGA
AAATTTGGGAGATAATTATTTCATGATTGACTCTCATACCGGTGTTGTTC
GTTTGATACAGAGACTGTTGTATGAGCAAAACACATTCTTTGATTTGACC
ATCACGGCTAAGGACCATGGCTCACCAAGCCTCTCTTCCACGGCATCGCT
CAGGATCTCAATCACAGACTCTAATAATCATCCATCGACAATTTCCATCC
CAAAACAACATCTCACCATCAAAGAACATAATCCTATCGGACAATTCTTA
ACATACGTCACTATACACGATGAAGATTCCGTCGAAGGGAATTTCTCATT
AAAGCTTCTGAACTATAACTCCATCTTCACTGTCAAACCATTTCAACTTA
ACAAAAAAATAGACCAGACATCGAAAAAGGCTATCCGATATTATTTGACC
ATCGAACAATCAATCGAGTACACAAGTTATCCATATTTTGAGCTAAATCT
AAAAGCGACGGACGGTTTGTATGAAGCTTACGCTAAACTTTTCATTGACG
TTGAAAACATAAACAATCACCCACCAAATTTTGACCAGCAAAATTACGTA
ACGGAATTCTACGTACGATCTCCGGAAGGTTCATACGTAGCCACGATGCA
CGCAACTGACACAGACTTCAGCGACGGCGGGAATATTACGTACAATTTAG
CTCCATCGATGCTTAGTAATCATTTTAATATTTCATACACTGGTGTCATA
TTACTGACTAAACCATTACCATTAGACCAGGTCGGTTTTATCAACTTAAC
AATTTCCGCAACCGACCATCAAACACCTACCAAACAAACTTTCGGTTACC
TTTCGATGAAATTGGTCTCCAGAAAAAGCCCGTGTCAACCGAAAATTTCG
ACCTATCCTCGGAAAATTGAACTCGATAGAGCAGAACTCTCTAAAACCAT
CGCAGCATACCCAACAGAAAACAATTGCCTGGTTCTTTATAACTTACAAA
CGAATGTTGCAGAAACTGTTTTCACCATAAATGAGCATGGAGAGGTATAT
TTTCATGAAATGCCAACGAAGCATGACCAATCAGTAAACCTCACCATCAC
TGCATACAATATTCACAATCTCCATTATACGGATACTATATCAACCATTA
TAACTTTCATTGACGAAAAAATCACCACGGATCATGTTGAGTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053485-exon-scaffold_231-1491911889:170301..172290 | TCONS_00053485-exon-scaffold_231-1491911889:170301..172290 | Clytia hemisphaerica | exon |
| TCONS_00053485-exon-scaffold_231-1510915933:170301..172290 | TCONS_00053485-exon-scaffold_231-1510915933:170301..172290 | Clytia hemisphaerica | exon |
| TCONS_00053485-exon-scaffold_231-1575043694:170301..172290 | TCONS_00053485-exon-scaffold_231-1575043694:170301..172290 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:170301..172290 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0005886 | plasma membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO:0007155 | cell adhesion |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007155 |
cell adhesion |
| biological_process |
GO:0007156 |
homophilic cell adhesion via plasma membrane adhesion molecules |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0005886 |
plasma membrane |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00053485 vs. Swiss-Prot (Human)
Match: PCDGA (Protocadherin gamma-A10 OS=Homo sapiens GN=PCDHGA10 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 6.876e-46 Identity = 161/594 (27.10%), Postives = 273/594 (45.96%), Query Frame = -2
Query: 151 LGRIPT--IENGTVVFVRNIDPLYVNVNVSTGIVSTISPIDREEI--ESIRCFIVNEF---SKQSLSQXXXXXXDVNDHYPEFHPSTKQLSISEYFKVGHSLSLLSPVDKDSGYNGMISNVTLKNNESRFSIVYNKKDSKYFSLVLEEPLDREDEPFIVIELMTTDCGSPSLSSKAIINITVQDINDNQPVFPNTNMFLSISEATEVNSSLISMNATDLDDGDNAEILYTLTSSKENLGDNY---FMIDSHTGVVRLIQRLLYEQNTFFDLTITAKDHGSPSLSSTASLRISITDSNNHPSTISIPKQHLTIKEHNPIGQFLTYVTIHDEDSVE-GNFSLKLLNYNSIFTVKPFQLNKKIDQTSKKAIRYYLTIEQSIEYTSYPYFELNLKATDGL---YEAYAKLFIDVENINNHPPNFDQQNYVTEFYVRSPEGSYVATMHATDTDFSDGGNITYNLAPSM-----LSNHFNI-SYTGVILLTKPLPLDQVGFINLTISATDHQTPTKQTFGYLSMKLVSRKS-------PCQPKISTYPRKIELDRAE----LSKTIAA-YPTENNCLVLYNLQTNVAETVFTINEH-GEV 1833
LG P E G + R L+ ++N +G + T IDREE+ +S RC + + L I I++ D+ND+ P+F + I+E G L +D D G N + S N + KY LVLE LDRE+E + L +D G P S ++++TV D NDN PVF +S+ E V + L+++ ATD D+G N E+ Y+ L D F ++ +TG +++ + L YE+ F+++ I A+D G + +TA + I++ D N++ ++I + E +P+G + + +HD DS + G + +L Y PF+L K ID Y L I ++++ + + + ATDG A + V +IN++PP F Q +Y T + G+ + ++ A D D + I Y+LA LS++ +I S TGV+ + +Q + + ++A+D P + LS+ ++ + P P + ++ AE ++K +A + N + Y L +F + EH GEV
Sbjct: 56 LGLAPRELAERGVRIVSRGRTQLF-SLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSF----RKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGG--AYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAY------LPFKLEKSIDS------YYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEV 630
The following BLAST results are available for this feature:
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