TCONS_00053485-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053485-protein
Unique NameTCONS_00053485-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053485-protein ID=TCONS_00053485-protein|Name=TCONS_00053485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MAQQQILILLCLALTLPIVRAYFSYRFQVREHELLPLTLGRIPTIENGTV
VFVRNIDPLYVNVNVSTGIVSTISPIDREEIESIRCFIVNEFSKQSLSQI
IIDIIDVNDHYPEFHPSTKQLSISEYFKVGHSLSLLSPVDKDSGYNGMIS
NVTLKNNESRFSIVYNKKDSKYFSLVLEEPLDREDEPFIVIELMTTDCGS
PSLSSKAIINITVQDINDNQPVFPNTNMFLSISEATEVNSSLISMNATDL
DDGDNAEILYTLTSSKENLGDNYFMIDSHTGVVRLIQRLLYEQNTFFDLT
ITAKDHGSPSLSSTASLRISITDSNNHPSTISIPKQHLTIKEHNPIGQFL
TYVTIHDEDSVEGNFSLKLLNYNSIFTVKPFQLNKKIDQTSKKAIRYYLT
IEQSIEYTSYPYFELNLKATDGLYEAYAKLFIDVENINNHPPNFDQQNYV
TEFYVRSPEGSYVATMHATDTDFSDGGNITYNLAPSMLSNHFNISYTGVI
LLTKPLPLDQVGFINLTISATDHQTPTKQTFGYLSMKLVSRKSPCQPKIS
TYPRKIELDRAELSKTIAAYPTENNCLVLYNLQTNVAETVFTINEHGEVY
FHEMPTKHDQSVNLTITAYNIHNLHYTDTISTIITFIDEKITTDHVEFE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033761XLOC_033761Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053485TCONS_00053485Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002126Cadherin
IPR020894Cadherin_CS
IPR015919Cadherin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005886plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
biological_process GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002126CadherinPRINTSPR00205CADHERINcoord: 114..143
score: 23.24
coord: 221..234
score: 29.48
coord: 202..221
score: 44.73
coord: 279..305
score: 27.66
coord: 59..78
score: 28.61
coord: 313..330
score: 26.04
IPR002126CadherinSMARTSM00112CA_2coord: 136..221
e-value: 5.2E-10
score: 49.3
coord: 466..544
e-value: 0.033
score: 19.0
coord: 245..329
e-value: 2.4E-23
score: 93.5
coord: 353..442
e-value: 0.021
score: 20.9
coord: 37..112
e-value: 0.24
score: 10.1
IPR002126CadherinPFAMPF00028Cadherincoord: 121..214
e-value: 1.5E-9
score: 38.1
coord: 456..534
e-value: 8.4E-10
score: 38.9
coord: 231..322
e-value: 1.4E-17
score: 63.8
NoneNo IPR availableGENE3D2.60.40.60coord: 222..322
e-value: 3.9E-29
score: 100.7
coord: 447..537
e-value: 2.5E-17
score: 62.7
NoneNo IPR availableGENE3D2.60.40.60coord: 121..221
e-value: 2.9E-20
score: 71.9
NoneNo IPR availableGENE3D2.60.40.60coord: 562..639
e-value: 0.34
score: 10.7
NoneNo IPR availableGENE3D2.60.350.10coord: 324..446
e-value: 3.4E-12
score: 45.7
coord: 46..120
e-value: 1.7E-8
score: 33.6
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 445..549
score: 13.093
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 60..114
score: 10.659
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 332..444
score: 12.852
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 115..223
score: 18.837
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 224..330
score: 23.901
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 229..327
e-value: 3.48342E-26
score: 102.392
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 24..83
e-value: 0.0012579
score: 36.5226
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 457..531
e-value: 4.70072E-12
score: 61.9457
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 337..440
e-value: 2.67354E-5
score: 41.9154
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 120..219
e-value: 3.74541E-16
score: 73.8869
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 211..221
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 432..537
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 325..435
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 211..333
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 102..219

Blast
[Close]
BLAST of TCONS_00053485-protein vs. Swiss-Prot (Human)
Match: PCDGA (Protocadherin gamma-A10 OS=Homo sapiens GN=PCDHGA10 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.197e-50
Identity = 179/687 (26.06%), Postives = 305/687 (44.40%), Query Frame = 0 
Query:    7 LILLCLALTLPIVRAYFSYRFQVREHEL--------LPLTLGRIPT--IENGTVVFVRNIDPLYVNVNVSTGIVSTISPIDREEI--ESIRCFIVNEF---SKQSLSQIIIDIIDVNDHYPEFHPSTKQLSISEYFKVGHSLSLLSPVDKDSGYNGMISNVTLKNNESRFSIVYNKKDSKYFSLVLEEPLDREDEPFIVIELMTTDCGSPSLSSKAIINITVQDINDNQPVFPNTNMFLSISEATEVNSSLISMNATDLDDGDNAEILYTLTSSKENLGDNY---FMIDSHTGVVRLIQRLLYEQNTFFDLTITAKDHGSPSLSSTASLRISITDSNNHPSTISIPKQHLTIKEHNPIGQFLTYVTIHDEDSVE-GNFSLKLLNYNSIFTVKPFQLNKKIDQTSKKAIRYYLTIEQSIEYTSYPYFELNLKATDGL---YEAYAKLFIDVENINNHPPNFDQQNYVTEFYVRSPEGSYVATMHATDTDFSDGGNITYNLAPSM-----LSNHFNI-SYTGVILLTKPLPLDQVGFINLTISATDHQTPTKQTFGYLSMKLVSRKS-------PCQPKISTYPRKIELDRAE----LSKTIAA-YPTENNCLVLYNLQTNVAETVFTINEH-GEVYFHEMPTKHD---QSVNLTITAYNIHNLHYTDTISTIITFIDEKITTDHVEFE 649
            L+LLCL   +P         + + E EL        +   LG  P    E G  +  R    L+ ++N  +G + T   IDREE+  +S RC +        +  L  I I++ D+ND+ P+F      + I+E    G    L   +D D G N + S     N      +       KY  LVLE  LDRE+E    + L  +D G P  S   ++++TV D NDN PVF      +S+ E   V + L+++ ATD D+G N E+ Y+       L D     F ++ +TG +++ + L YE+  F+++ I A+D G  +  +TA + I++ D N++   ++I      + E +P+G  +  + +HD DS + G  +  +L Y       PF+L K ID        Y L I ++++      + + + ATDG        A   + V +IN++PP F Q +Y T     +  G+ + ++ A D D  +   I Y+LA        LS++ +I S TGV+   +    +Q   + + ++A+D   P   +   LS+ ++ +         P  P   +   ++    AE    ++K +A    +  N  + Y L       +F + EH GEV         D   QS+ + +  +    L  T T++  +     ++  D   FE
Sbjct:   17 LVLLCLFFGIPWEAGARQISYSIPE-ELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLF-SLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSF----RKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGG--AYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAY------LPFKLEKSIDS------YYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFE 683
The following BLAST results are available for this feature:
BLAST of TCONS_00053485-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCDGA2.197e-5026.06Protocadherin gamma-A10 OS=Homo sapiens GN=PCDHGA1... [more]
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