TCONS_00048172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048172
Unique NameTCONS_00048172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048172 ID=TCONS_00048172|Name=TCONS_00048172|organism=Clytia hemisphaerica|type=transcript|length=2331bp
TATAAACACTCGACTGCTTGTATCATGTCATataatttgcaaaattacaa
aaaaaatcaattactTTCCATTTGACATTGATGTTTTCACTTGTTGATGG
TTGTAGTGTAAGAGTTTTGATAAATGCCCTCTTTCAGTTTTGGCCTGAAA
GATGGAGGATGGCGCTTACTTTACCGTCGTAAATACACCATTGGCCTTGT
TCTAACATTATTAGTTTTTCTTCGGAGTATTTTCTATCATGTACCTGCTA
TTCATTTCACTCTCCGCCAGAACACAAAGCGAGTACCTTTTGTTTACAAA
GATGTTGTTATAAACCCGACTGTTGATCACGGTACAAATTTATTTGCACT
GATATTGGTTAGTTCAAGCCCTCATTCCGAGGCTCATCGTCAGAAACGAG
ATGCTATCCGTAAAACATGGGGTAATTGTGCCAATCTTCTTACTATGTAT
CGTGAATCACGTCACCTGCCTAAAGATATAGCTTGTAAACTTGTCTTCTT
CATAGCACGCTCAGATCATGACGAGGCTATCCGAAAAGAAGCTAACGAAA
ATAATGATGTCTTATTGGTTGACTATACTGATCGTTATTCAGCTATCACT
TTAAAATTAATGGTTGCTTTCAAGTGGGCCAGCAGCTTGAACCCATCGTT
CATACTCAAGACAGATGATGATGTTTATATCCACACACCCAAGTTATTTG
GGGGTCTTGTACGTGAAACTGATGGTGATTTTTATGGTGGGATTGTCTTA
GAAGGAAGCAAGGTGCAGCGCGAAGTTGGTCACCGGCATTATATATCTAG
AGAACAGTACAAAGATGATTATTATCCACCGTACTGCAAAGGAGCAATGT
ATGTGTTCAGTGGTAATCTATTACCAAGGATTTTATACGCAGCTGATTAC
GTCCCGTACATGCATGTAGACGATGCTTACGTAGGGCTTCTAATGTACTA
CATAGGTGTTGAAGTGGaaaatctacatttttttgttcaCTTCAAAACAG
TTTTTCTAGCATTTCCGTACACTCTTACTGATTGTGCTATTAACCGGATC
ATTGCTATTAGTGATAGTTTCCAAGCAGACATGATTTATTCCATCCATGA
GAGAATCAAAGCTTCAGAGAATATGTTGTTGACAAGATATTTATGTTATA
CGGACAGTAGAGCAACAATTATTGTGGTTTGTTTGCTCATTATCATTGTG
GTCACTGTATATAATGTTTTGAAGAATGCAAGAATCATCGGTTTTCATTA
CAAGcaataaattattttggttttattattttgggactttcattttttaa
tagCTTCAGTCCTTTCATTTTGAGAGAATGTTAATATATAAAGGTATACC
CCGGTGTCcacaaaatacttcAGATATTATCGACCCATATAAAAGGAAGT
GTGTCCAGTTTCATAACTGGCTAGCCCATCAccttgttttcaattctggt
tGTTAACGTTTGAGAATCGTAAATTTAGAAAACAACATGGCCGACTAGTG
GACTATAAAACTAAACTCACTTCCATGAGAAATCTGTATAATGATATCTG
TGGTATCGATCTCTTTCAGCAAAACAAATGACTCTAAGTGCTCAGATTGA
TTTGAGTTTCCTTGGTaacaaaaatttacattttacgAAAAGCGAGATGA
GAACACTTAAAAAAGGTATTTGATATTTCCTCCTTGATGTACAATCTCCA
agacactctttttttataacaaccagTAGATTTTTGATGAGGCTTGgctg
ttctcatttttttggcactttgagcctaaaattgttcttattctgttctt
atTTAAAATGGAGTGAAATTGAACTATTTTGACCCctgaattgcttgaaa
ttgagtaattccaggctcagattgttcttaaattgttatttttgttttat
ggcgattttgagcctcattgttcttataaaattgttcttacaagTTATAG
ATGTATTTACTGGGTGTCCGTTTATTGGTTGTTCAGTTGATCAGTTTAAA
ATATTATACGTGTTAATTTCCTTGAttgaaaatattataattttaaaaag
acaaATTATATATTATTGGAAATAGTTTCTCAATATTcttatatataata
aaaaatgctcaaaaagaactaaaaagttttgatttaatgGCTGGATGCTT
TATTCTTAAATTATACTTGGATTGTGTTGAGTTGTTTGTCATTTTTTCGT
AACATTAGTTATCCCTATATTAGAATAATTATCATGCATGCAAGATTTTT
GTAAATTAgagttaagtttttttttaatttggaatTTTTAATAGCAAAAA
TAGCAGTCAATCGTTCCATAATttaataaat
Run BLAST on NCBI

protein sequence of TCONS_00048172-protein

>TCONS_00048172-protein ID=TCONS_00048172-protein|Name=TCONS_00048172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MPSFSFGLKDGGWRLLYRRKYTIGLVLTLLVFLRSIFYHVPAIHFTLRQN
TKRVPFVYKDVVINPTVDHGTNLFALILVSSSPHSEAHRQKRDAIRKTWG
NCANLLTMYRESRHLPKDIACKLVFFIARSDHDEAIRKEANENNDVLLVD
YTDRYSAITLKLMVAFKWASSLNPSFILKTDDDVYIHTPKLFGGLVRETD
GDFYGGIVLEGSKVQREVGHRHYISREQYKDDYYPPYCKGAMYVFSGNLL
PRILYAADYVPYMHVDDAYVGLLMYYIGVEVENLHFFVHFKTVFLAFPYT
LTDCAINRIIAISDSFQADMIYSIHERIKASENMLLTRYLCYTDSRATII
VVCLLIIIVVTVYNVLKNARIIGFHYKQ
Run BLAST on NCBI

transcript from alignment at scaffold_141:366151..375214+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048172 ID=TCONS_00048172|Name=TCONS_00048172|organism=Clytia hemisphaerica|type=transcript|length=9064bp|location=Sequence derived from alignment at scaffold_141:366151..375214+ (Clytia hemisphaerica)
TATAAACACTCGACTGCTTGTATCATGTCATGTAAGTATTTTTACTGTTT
TATACCATGCTTTTAAACTGTCATCATTGGAAACTGCACATGTAAGTTTT
TCTTGTACAATTTTGTATGAATTTGTGATACCTAAGCAAAAACAATCAGT
GAAGAAAATGAATTCAAGAATGattgacttttgcttttttaGGATTAAAA
AGCTCGTAAGCTAGCTTTTTGTTCCTCAAAACTCAAAagctttgttttct
ttctttttctttattttctggaTCTCTTGCTGTGGATGGAGGGAAAGTCC
GCCCTACAAAACACAGAGCAGAAAAGGGGTGAACTTTAATAGAGGGAGGG
GGATTTTAACAGAAGTTTTTAGATCCAAATATTAATATATCGCATCGTGA
AAAGTAATACCGTGattggtcctaaatccgacagccctgcctaattctgA
TAGGGTCTTTCagagatacaaactaaaattaaaacaaacctttcagttag
tcacactagcgtcccgccaaaatgcgtatcaaagataatgctgcgaaagc
gctatatcgtttctctgactctcaagcaaaaaaatgcgccgcaaaacttc
taaagggattcatgaaaaaataacccggcgctttttattgaaattaacat
tttcaaaaactttgagaaattgcccaaaatttgagccatagatgaaaaaa
tttgagccaagccaacctttacaactaatttgaagatcaacttcccaaga
aaaagatctacgggggaggcggaacccacctagatccgcgtaccaccgga
taggctgtttcccaGAAATTTTAACATTGTAAAATCTTCCCGCAAAATGT
ACTAAAAATTATTAGCTTGAGTACTGTATAAGCTTGAGTACTTTTATTTC
CATACCGtagaatcgtctaatatcgacatgcgtcttctaaagtcgacacc
ggatctgtaaaataatcaaaacaaaccttgaatgaaattcttggtatcat
tcttatcaaacaagttcatccatcaaactagaagttcaataaacattgca
atcctcataagcagttttacacagcacacgaaacgcatgcaaacttcctc
gtaactttctcgtgtccatcattaaaattttgcaactttattacgcttca
agtcacgtgataaaaataattcgggcgcttagcctggtttccccttcctt
atttatcaaaaacacaagctctaggcgctaagaggccgtacgccgtgatg
gccagtatggcggtcacattaaattcaaaaggaaaccgggttctttttat
tattttcagttcacggtaaaaaggtctactaaaaaattcctcgcgtgcaa
aatgttgttttgatttggatacCTTCGTTCCGTTGAATGAAAGCAtacta
attagttttttagtgactacatcgttaaagttttcttttcgaaaaaaacc
cacttcacgtttcttatatttcaacaatctgtgacgtgatagggagagta
caatttagtgattgattgataactttggtatgtatttgtttatgtttgat
tttttatttcgaagaccagcctacagctatgtcgaaataacaagacgcat
gtcgatattaaacgactctacggtaatACAGAGCAGATAATTTCCGACCC
AAAGTGTTGAAGGAATTAAAAATAAGGAACAGAGTCATGGTTGTCATGTA
CTCCCAAACGACTATTTCAAAATGTCCCCATTGTCGTTAGCTACTTGTTG
TGATCTTTCTAGTTGAAatgttgaaatttattttttgaaaacttaaaaaa
aaatcttgtatGTCGTAAGAATTAGAATCAGCTGGTTTGGTGTTTCTTGG
ACCCATAAGGAACCTTTGTGTCAGATTTAAGccacatattatttttttca
accaGGTAAAACCTAATTCTATCAGACTACAGTATATTGATGGGCCAAGC
AAATGTGGCACCCTGTGACAAATTAAAGAAAGTTTTACAGCAACTATGAG
GGGTGGTGTCCAAATGTGGTCAACTGAGTACTAAAAGGGTCGTGCAAAAA
CTCAACAGGGTTTTAAAAAGGACGGTACCAAAGCTCTGGTCATGGAAGAA
AGTTAGTTCAGTTTACCAAAAAGGCTGGAAAAGTTTTATGCTGTAGTAAT
TAAAGTTATTCAATATACTCTTGCATTCTCCCAAACGACCTGAAACGAct
attctattgttttattcatttcattattttatgaCTGCATGTAGTGGGCT
ATCAGTCTTGACTTTGGTATGTGAGCTCAGGGTTCAGTTCCCACTCAGTG
ATGTGATTCACTTTGCAAGGTACatccatgccatgtgaggggaattacAT
ACCAggctctgatacaagagtgttgGGAGATATGCCCAACTCTGTGGTAT
GGTTGCTATTACTTGTCAGGCTCAACCATGCGGGGATACACTGTCCTCCA
TGTCACTCTCATTGAACAACATATTTTTTTGCTACCTTACAGTTAATGGA
ATAAAATGATTAGCCAACAGTAGAAAATCAATATATTAACTTAAAAATGT
ATCGTTTGGTTTTAAATTGTtggagaaaaaacaaacctttgtTTCTTTGT
GGTTTATTTTCTGTTGCTTTCTTTATCTTTTACTCCTTGAATGTGCAAGG
NACCTTTGTTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTTATCTTTTAC
ACCTTGAATGTGCAAGGATGGCATTGGTACAAGATGGCAAAACAAGAGGT
TTGTGAGACTCCTGATAACTACATGAATGAACTCAAGTCTTTATTTCGTG
ATGCTCATGTTATCTTAACTAAATTTGGTTTGACACATGTTTTGATATAT
GGCAGGTAAGTTTAACATTTCCTTGATTGCAGTTTTGGAATTataccttt
ttaaaaaatttttttgattttgaagaatcattccttttgaaataaaaaaa
catcttGGTTTAATGTCTTAGTTTTGATATTTCTCACCTTTTCCATGAAA
GAGTTTCACTGTTCAAACTATTTTATACTCTTTAGCACAAGTTTCTTATT
TTAACAGTTTATTTGGTGCAATGCGCTTTGGTGGTCCTCTTCCTTGGGAC
AATGACTTTGATCTAGCAATATTGTCCGAAGAAGTTGCCCAAATTGATGA
ATCAAAATTTCTCCAAGAGTTCTATGATCGAGGAATAAAAGTGATGTATA
GGCATTGGAAAGGAGAGTATGTGATTTCAAGAAATAAAGCACACGGTGAT
TTGATGATATTTTCTGAGACATGGTTCGGTGATCGAGGAAGGACTGGAAT
TGAACCATGGGTGTTTTTCATACACTTTCGTAATTTTCATCAGGCGCCAG
CAAGATTGTTTGAGAAGCCGTTACCAAAATTACCTTTTTTAGGAATGAAT
ATTTCTGTACCTCGTGAGGGAATGGAAATTCAAAGGCATTTCTATCCCAA
TGATTGGTGGAAGGAAGTAAAGCCAAAAGGCTGCTAAAGTGTTTTTGTCT
TTAAATTTATAAAATagtatattttgataattttaagttcCAAACGTTGT
CAAGATCTATTTGTTGCTAAATAGAAACTTCTTTAGGTTCCGGataaaat
tactttaaaaattttagaaaaatcttttcatcCATTTTTCATACAACCCT
CACTATCGGGTCATTATTGTAGGACAGTGTTAATAGTGGAAATAAATTAT
TATTTACATATTAATTATTTAGAATCTGTCAACAGAATTCTATAGaaata
attatatttttgaattttttatcaatataagTAAGTATTAGGGTGTTGGT
TTGTTTCACCAAAGACAGTGCTAGTGTAAAGGAGCAATATAATAATGATg
agtcaaaactttttttaaatgtagaacctaaagtttcttgcttacaatca
tcagctacataCAAGTTTGagctgattgaaaaaaattcaaaattcagtct
caaaaaattaatgagtaaattagaaaaataaaattatgaacCCCATTGTG
TGAGCATGTCCagtctattttgttttttttaattctgtctGACTTTTACT
CTTAATCCCTAGCTATTTCACTAAGGCACGTGATTAAATTATTTGTTAAT
TAAATAGAAATTCAGTTTAgttttttatctaaaatataatattactctag
atcttatttttaaaGCTTGCTTTTTTTAAGTCATTATTTTCTAAACATTT
TAAACATCTTTATTAAATATATATTCCTATTGTTAGATTATAACTGATAG
TTTCAAACTATGACAAAAGTATACATATTATATGCTCTTATTTTAGACga
caaaattattattttaagcatATTTTAAATAACTTTAGAGAACTTTTAGA
TTATACTTTGtaatgatatgatatgatatgatattcGAATTTGGAGCGCT
TAGCGCTGTCCAGACACCGCTGGTTCTGTGCACTCGAGACACAGATACCA
TGATGCAAGATATAGTTTGTAAAGTCTAAAGTATCTAATTAATTAGATAA
GTACTCTTTTATTCACTCTTAATTctatagtttttttaaataatgcccct
tctttgaatttttaaaaactaattaccttaaggaaagaaattttcgcggg
aacaaaattttgcggttttcgcggattttgcctaaaaccgcaaaattaag
ttcccgcgaaattttacaaaatcgtcaaaccgcgaaattaaaatcccgcg
aaatttaatttatttcacgcattcccccaaattcgtactatttcaagcct
taaagcaggttttttgcttagttagtaacgcttttggccaaaaatatcct
gcaacatcgatgaaccgcgaaattaaattcctgcgaaaaaaaatattttg
accagccgcgaaattaaattcccgcgaaaatttcttcccttaaggtagca
cTACTAATGAACTATGATAGTTTACAGATGATGTTGTGAAAATCTTGCTT
GAGCAGACTTCTTAAATATACAAGAAAAAATCTCTACTGGttatgaaatt
tcatttttgtcttttataaagaagacatttaaaatttaaggtccagggga
gggggtactaggtttgcaaggTGACAGACAAAGCCTAAAATAGAAACACT
TTCAGCGAAGGGTtgccttatggctcgcacatacccgtcgcctgttttgc
ctaagtgccccttAAATTAAGATCTTTTTAAAGCTTCTTGCTACAAATTa
ttagattttctttttcaaaatcttagtaattatatttttattactttttt
gtacaTCTTTTAATATTATATAACCTATGCTTTCTTAGGGTTTTGAAGGT
TTTATCTTTACATAAGTGTCCTCGTTTcttatcagacacatatttcatat
caggactgtgtctgcctattgttatatttgtTATCTTTTgctctttctga
ccaatattGTTCCACATCCGCCAATTCAATGtggaaaagcttgtgaatta
aaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctt
taaatttaaTTGGATATTAATTATTCCTGAATTGTATTAAGCAGATAGAT
CAGGATAGATAAGCGAGGCTGAATATTATGATATCAGATTTTTCACGTTG
AATATATGGTTTATCGTTCACCAATTAGCAGAAaagcattttaatttttc
cctaTTTCACATTCAGTCTTTCTCAGCCTTTTCTCTCTTTTCATgacatt
ttcgaacgttttactatCTTATTTAAGGAtatcaatttcattgtttttta
tctttaattACAAAACGTTCGAAGTGACATTTACAtaattatttgatcaa
aaaacTATTAAATTCTTTATGCTCGCTGCTACAGAAGAGATATTTTGATT
ATTCGACAGTGCGTTTTGCCTAGAGGTGGACGATATACGTTTTTATTACA
TGTGCTACATTTGTTTTGATGgaagtttatttttttacaaaggaATCACC
TGCCTCACTTTACATAATAGAACTCCGTGCCTATATTCCTCTTTAACGCA
TAGATGATGCCTTGATAAATATACCCTTAGGGCCCCCGGTTAAGAGGGCC
TAATTGATATGAGGGGGGGGCCTAGTATAGAGAAAGAtagaaaaatttta
agattttgatttgCTGAAAGTGCAATATTTTACCATTTCATGTCAATCTG
TCACTAAGATTTTCtagaaattaaattcaaatagcttttcttggaaaata
tttGGGTGTCATGGTTGTGACCAGTGGTTTTATTTCTggctttaaaaaaa
agttgaattggtttgaacaaaaaaaattatcaaccGAGAAATgtggattt
gaaaaaaatatatcctgCCAATATCGAATTAAATTCTTGAGATATGTGCT
TTTTTATCAGTTAAAATGCATAACTACCAAGATAAAAATGGTGTAGGGAT
TAATTTTTAACTTAACCATCTGCTAAATCATTTAGTCTGCTACTGTAAAT
CATTTGGTCTTAAGACTACTGATGTAATATTAGCAATAGTTCTAGGTTCT
GGTTTTACTTACACATTTGATAAGCTCTGCAAATTACTTActaattaaat
gaaattttaaatgatttactatttgtttatatttttctcatttcagataa
tttgcaaaattacaaaaaaaatcaattactTTCCATTTGACATTGATGTT
TTCACTTGTTGATGGTTGTAGTGTAAGAGTTTTGATAAATGCCCTCTTTC
AGTTTTGGCCTGAAAGATGGAGGATGGCGCTTACTTTACCGTCGTAAATA
CACCATTGGCCTTGTTCTAACATTATTAGTTTTTCTTCGGAGTATTTTCT
ATCATGTACCTGCTATTCATTTCACTCTCCGCCAGAACACAAAGCGAGTA
CCTTTTGTTTACAAAGATGTTGTTATAAACCCGACTGTTGATCACGGTAC
AAATTTATTTGCACTGATATTGGTTAGTTCAAGCCCTCATTCCGAGGCTC
ATCGTCAGAAACGAGATGCTATCCGTAAAACATGGGGTAATTGTGCCAAT
CTTCTTACTATGTATCGTGAATCACGTCACCTGCCTAAAGATATAGCTTG
TAAACTTGTCTTCTTCATAGCACGCTCAGATCATGACGAGGCTATCCGAA
AAGAAGCTAACGAAAATAATGATGTCTTATTGGTTGACTATACTGATCGT
TATTCAGCTATCACTTTAAAATTAATGGTTGCTTTCAAGTGGGCCAGCAG
CTTGAACCCATCGTTCATACTCAAGACAGATGATGATGTTTATATCCACA
CACCCAAGTTATTTGGGGGTCTTGTACGTGAAACTGATGGTGATTTTTAT
GGTGGGATTGTCTTAGAAGGAAGCAAGGTGCAGCGCGAAGTTGGTCACCG
GCATTATATATCTAGAGAACAGTACAAAGATGATTATTATCCACCGTACT
GCAAAGGAGCAATGTATGTGTTCAGTGGTAATCTATTACCAAGGATTTTA
TACGCAGCTGATTACGTCCCGTACATGCATGTAGACGATGCTTACGTAGG
GCTTCTAATGTACTACATAGGTGTTGAAGTGGaaaatctacatttttttg
ttcaCTTCAAAACAGTTTTTCTAGCATTTCCGTACACTCTTACTGATTGT
GCTATTAACCGGATCATTGCTATTAGTGATAGTTTCCAAGCAGACATGAT
TTATTCCATCCATGAGAGAATCAAAGCTTCAGAGAATATGTTGTTGACAA
GATATTTATGTTATACGGACAGTAGAGCAACAATTATTGTGGTTTGTTTG
CTCATTATCATTGTGGTCACTGTATATAATGTTTTGAAGAATGCAAGAAT
CATCGGTTTTCATTACAAGcaataaattattttggttttattattttggg
actttcattttttaatagCTTCAGTCCTTTCATTTTGAGAGAATGTTAAT
ATATAAAGGTATACCCCGGTGTCcacaaaatacatattttttttttataa
gcaagtgtctgtccctacatcaggctcacattatgcttagcattctattg
ttcttaaacaatagagccattgtccTGCCATTGTTTAGGCACCAacaact
gagcctgcatatgcttataaacgttatgcttataaaagaaaaaacatgta
cttcAGATATTATCGACCCATATAAAAGGAAGTGTGTCCAGTTTCATAAC
TGGCTAGCCCATCAccttgttttcaattctggttGTTAACGTTTGAGAAT
CGTAAATTTAGAAAACAACATGGCCGACTAGTGGACTATAAAACTAAACT
CACTTCCATGAGAAATCTGTATAATGATATCTGTGGTATCGATCTCTTTC
AGCAAAACAAATGACTCTAAGTGCTCAGATTGATTTGAGTTTCCTTGGTa
acaaaaatttacattttacgAAAAGCGAGATGAGAACACTTAAAAAAGGT
ATTTGATATTTCCTCCTTGATGTACAATCTCCAagacactctttttttat
aacaaccagTAGATTTTTGATGAGGCTTGgctgttctcatttttttggca
ctttgagcctaaaattgttcttattctgttcttatTTAAAATGGAGTGAA
ATTGAACTATTTTGACCCctgaattgcttgaaattgagtaattccaggct
cagattgttcttaaattgttatttttgttttatggcgattttgagcctca
ttgttcttataaaattgttcttacaagTTATAGATGTATTTACTGGGTGT
CCGTTTATTGGTTGTTCAGTTGATCAGTTTAAAATATTATACGTGTTAAT
TTCCTTGAttgaaaatattataattttaaaaagacaaATTATATATTATT
GGAAATAGTTTCTCAATATTcttatatataataaaaaatgctcaaaaaga
actaaaaagttttgatttaatgGCTGGATGCTTTATTCTTAAATTATACT
TGGATTGTGTTGAGTTGTTTGTCATTTTTTCGTAACATTAGTTATCCCTA
TATTAGAATAATTATCATGCATGCAAGATTTTTGTAAATTAgagttaagt
ttttttttaatttggaatTTTTAATAGCAAAAATAGCAGTCAATCGTTCC
ATAATttaataaat

Coding sequence (CDS) from alignment at scaffold_141:366151..375214+

>TCONS_00048172 ID=TCONS_00048172|Name=TCONS_00048172|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_141:366151..375214+ (Clytia hemisphaerica)
ATGCCCTCTTTCAGTTTTGGCCTGAAAGATGGAGGATGGCGCTTACTTTA
CCGTCGTAAATACACCATTGGCCTTGTTCTAACATTATTAGTTTTTCTTC
GGAGTATTTTCTATCATGTACCTGCTATTCATTTCACTCTCCGCCAGAAC
ACAAAGCGAGTACCTTTTGTTTACAAAGATGTTGTTATAAACCCGACTGT
TGATCACGGTACAAATTTATTTGCACTGATATTGGTTAGTTCAAGCCCTC
ATTCCGAGGCTCATCGTCAGAAACGAGATGCTATCCGTAAAACATGGGGT
AATTGTGCCAATCTTCTTACTATGTATCGTGAATCACGTCACCTGCCTAA
AGATATAGCTTGTAAACTTGTCTTCTTCATAGCACGCTCAGATCATGACG
AGGCTATCCGAAAAGAAGCTAACGAAAATAATGATGTCTTATTGGTTGAC
TATACTGATCGTTATTCAGCTATCACTTTAAAATTAATGGTTGCTTTCAA
GTGGGCCAGCAGCTTGAACCCATCGTTCATACTCAAGACAGATGATGATG
TTTATATCCACACACCCAAGTTATTTGGGGGTCTTGTACGTGAAACTGAT
GGTGATTTTTATGGTGGGATTGTCTTAGAAGGAAGCAAGGTGCAGCGCGA
AGTTGGTCACCGGCATTATATATCTAGAGAACAGTACAAAGATGATTATT
ATCCACCGTACTGCAAAGGAGCAATGTATGTGTTCAGTGGTAATCTATTA
CCAAGGATTTTATACGCAGCTGATTACGTCCCGTACATGCATGTAGACGA
TGCTTACGTAGGGCTTCTAATGTACTACATAGGTGTTGAAGTGGaaaatc
tacatttttttgttcaCTTCAAAACAGTTTTTCTAGCATTTCCGTACACT
CTTACTGATTGTGCTATTAACCGGATCATTGCTATTAGTGATAGTTTCCA
AGCAGACATGATTTATTCCATCCATGAGAGAATCAAAGCTTCAGAGAATA
TGTTGTTGACAAGATATTTATGTTATACGGACAGTAGAGCAACAATTATT
GTGGTTTGTTTGCTCATTATCATTGTGGTCACTGTATATAATGTTTTGAA
GAATGCAAGAATCATCGGTTTTCATTACAAGcaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030658XLOC_030658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048172-exon-scaffold_141-1491911889:366151..366181TCONS_00048172-exon-scaffold_141-1491911889:366151..366181Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1510915933:366151..366181TCONS_00048172-exon-scaffold_141-1510915933:366151..366181Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1575043694:366151..366181TCONS_00048172-exon-scaffold_141-1575043694:366151..366181Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1491911889:372747..374083TCONS_00048172-exon-scaffold_141-1491911889:372747..374083Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1510915933:372747..374083TCONS_00048172-exon-scaffold_141-1510915933:372747..374083Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1575043694:372747..374083TCONS_00048172-exon-scaffold_141-1575043694:372747..374083Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1491911889:374252..375214TCONS_00048172-exon-scaffold_141-1491911889:374252..375214Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1510915933:374252..375214TCONS_00048172-exon-scaffold_141-1510915933:374252..375214Clytia hemisphaericaexon
TCONS_00048172-exon-scaffold_141-1575043694:374252..375214TCONS_00048172-exon-scaffold_141-1575043694:374252..375214Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048172-proteinTCONS_00048172-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:366151..375214 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4905	19.5801	17.9419	19.3864	5.94603	5.28495	10.1498	9.20892	12.1144	11.64	14.5788	11.2351	15.551	15.1162	13.1691	15.2996	16.4481	17.0372	17.4674	17.7372	20.6871	19.1893	22.7196	24.0093	26.1336	25.7471	20.3594	17.5331	19.7217	18.5404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
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BLAST of TCONS_00048172 vs. Swiss-Prot (Human)
Match: B3GT5 (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.298e-25
Identity = 75/272 (27.57%), Postives = 131/272 (48.16%), Query Frame = 1 
Query:  277 KRVPFVYK---DVVINPTVD-HGTNLFALILVSSSPHSEAHRQ--KRDAIRKTWGNCANLLTMYRESRHLPKDIACKLVFFIARSD---HDEAIRKEANENNDVLLVDYTDRYSAITLKLMVAFKWASSLNP--SFILKTDDDVYIHTPKLFGGLVRETDGD-FYGGIVLEGSKVQREVGHRHYISREQYKDDYYPPYCKGAMYVFSGNLLPRILYAADYVPYMHVDDAYVGLLMYYIGVEVENLHFFVHFKTVFLAFPYTLTDCAINRIIA 1056
            K   FVYK   + +  P  D   T  F ++LV+SS     H+Q  +R AIR+TWG              + K    K  F +  +      + + +E+  + D++  D+ D Y  +TLK M+  +W     P  +F++KTD D++I+   L   L+++     F+ G +       R+   + ++S+ +Y  D YPP+C G  YVFSG++  ++   +  VPY+ ++D +VGL +  + + +E L    H +  F       + C   RI+A
Sbjct:   32 KEQSFVYKKDGNFLKLPDTDCRQTPPFLVLLVTSS-----HKQLAERMAIRQTWGK-----------ERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSKSVPYIKLEDVFVGLCLERLNIRLEEL----HSQPTFFPGGLRFSVCLFRRIVA 283
The following BLAST results are available for this feature:
BLAST of TCONS_00048172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GT55.298e-2527.57Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]
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