TCONS_00046584 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046584
Unique Name	TCONS_00046584
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1561

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_114:38447..42020+
coding sequence from alignment at scaffold_114:38447..42020+

transcript sequence

>TCONS_00046584 ID=TCONS_00046584|Name=TCONS_00046584|organism=Clytia hemisphaerica|type=transcript|length=1561bp
cttttttgatttgatttgagtaATCTTCTAGAGTAGAATGAAATAAAACA
AGAACTTTCTACTGGCGAAGAAGGAATTAGGGATTAAAGAAATGGCTGAA
CAAAGACAAGATGGTTGGAATATCGTTTGAAGATCCTACACTATTTTACA
TTCTCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCTACTC
TTTCTATATATACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGCTTGA
AGATAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATCAAAAGATGATG
AAAATAACCTTCTCTTTGTCTTCAATACAATTACCGAGCGACAACAATCT
AGTCCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTGAAGA
ATATGATGATTTTATGTTACGGAAATCCTCAAGTTATCTTGATCTAATCC
AGCCTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACTTAGATTTACAA
CTTTACAAAGATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGATATGG
AAGAATTTTGTTGACTTTGCTGTATGATCCAAACCAAGAACTTTTATGTC
TCCTGATCAATTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTCCTCC
ATCAGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAAGAAT
GCACTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAATTCG
TGTTCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCATTGCA
GTTTGTGATTTTGATCGATTTTCACGGCAAACGATAATTGGCTACGTCAT
GTTAAAGATGGAGGATTATAAAGATATGTTGTTGTCTAAGAGAGATTCAG
GAGAATTTTGGGCAGAGCTGCAAGATAACGATGCTATGCCAGGAGTAAAG
AAGGGCGATTTATTGTTTTCACTAGCTCATCTCCCAACAGCTGGTCGCAT
GACGTTAGCTGTCATCCAGGCTAAAGAATTAAACGCAAGTGCATCGGATA
AAGACACCGGTGTAGCAGTGAAGGTCAACCTCATCGTGAATGGGAAAGTG
GTCAAATCAAAGAAGACCTCCACCAACAAGTCACAACTCGATGCTCCAAT
ATTCAACGAATCTTTTGTTTTCGAGATCACAAACGAGCTTCTAGATCGTA
TCAGTTTCATCCTCATTGTATACGCTTACAGCGGGAATGGGAAAAGGGTG
GTCGGAAAAGCTAATACCGGGCCGTATATGTATTCTACGGGGACAGGTTT
GACGCAATGGAATGATATGTTAATGCAACCGAGAAAGGCTGTCGCTGAAT
GGCATAAGTTGATGTGAATTACTGTTCATGGTTTTGTGGACGATGAATAG
AAATTGGACTGTTCCTTCCTTTTGTAAATTTAATACGACTTTCATCAATG
AGTTATCtactttttatttgttttcggGAAAAGATCGTTCTATTAAAGTT
AATCCTGTTCACGCTTTTCACATACAGACTCATCTCTTAAACTACGGAAA
TTCACCAACAA

Run BLAST on NCBI

protein sequence of TCONS_00046584-protein

>TCONS_00046584-protein ID=TCONS_00046584-protein|Name=TCONS_00046584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MVGISFEDPTLFYILIGSLSGVILVVVVLLFLYIRRRNEIGTGKGLEDSL
ESYYPPSVESKDDENNLLFVFNTITERQQSSPVARQRSTPNSPAAEEYDD
FMLRKSSSYLDLIQPKVSTDLISAKDLDLQLYKDEVQQAESQNSGYGRIL
LTLLYDPNQELLCLLINCGENLQSKNNSSSISPYLKVCLLPDKKRRMHSK
TRKGANPTFDEEFVFSVPGSEIGKRILRIAVCDFDRFSRQTIIGYVMLKM
EDYKDMLLSKRDSGEFWAELQDNDAMPGVKKGDLLFSLAHLPTAGRMTLA
VIQAKELNASASDKDTGVAVKVNLIVNGKVVKSKKTSTNKSQLDAPIFNE
SFVFEITNELLDRISFILIVYAYSGNGKRVVGKANTGPYMYSTGTGLTQW
NDMLMQPRKAVAEWHKLM

Run BLAST on NCBI

transcript from alignment at scaffold_114:38447..42020+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046584 ID=TCONS_00046584|Name=TCONS_00046584|organism=Clytia hemisphaerica|type=transcript|length=3574bp|location=Sequence derived from alignment at scaffold_114:38447..42020+ (Clytia hemisphaerica)
cttttttgatttgatttgagtaATCTTCTAGGTATGATGAAGTAATTGAC
AGAACAGAGACATTTTTTGGATTGTTCGATTCCTGTGGAGAATCTTAGGG
ATTAAAGGGGGGATTATAATCATTTAGAATGAgatacattttatttttat
atgagAATATTACTTCAGGCANAATATTACTTGAGTCAACCCACGTATTA
TTATTGGAATATATCTATGTAGTCCATAACTAGGAATCTCAGGAGCTTGC
TGTCTATATGGGATGAAAGGACTGAGAAAACAGCACAGGCTACAGTCATT
TTTCCTTCTTAATGAAGCAAGGTCAGGAAGGTCTaggttttcaagtaaaa
aaccCGTTACCTGGCCGAAAAGAGTAGCCTTTCAACATTGTTCTAACGTT
ATTTGACAATAGATGGACGTTGTTAAGGAGTAACCATTTTAAAGTAAACA
TTGCTTTTAGAGTAGAATGAAATAAAACAAGAACTTTCTACTGGCGAAGA
AGGAATTAGGGATTAAAGAAATGGCTGAACAAAGACAAGATGGTTGGAAT
ATCGTTTGAAGGTAAGACAAGTTGCCCTTCGTATGCAGAGAAACTAATGG
ATAAGCTATACTAGGCTTTTTGTACACAATAACGTTTGTCACaatttgcg
actttttcgaatgtttggagctcAGGTTTTCCGATTTTTACTGAAActca
tcaaagtggaactcgCCAAGTAACGGAACAAAAAGTCCCACTTTTTGACG
AGGTACTCACTAACTGAGGGACTGAGAAAGAATTAATATTGCAATCCTGA
ATAATACTACAAATTTGTTTACTGTACCGAGCCAACTAATCGTATCGTAG
TCGGTCTATGTAAATCTGTTTACAGGACTTACGGTCGGTGGTTCAGCCAT
GTTATAATTATATGAAAcagctattttagggaaaatcgGTGATTGAAATT
TCCAAAGACTTTGGATTTCAAACTAATCCTCCCACAACCGATTAGGATTT
ACTGATTATACTCTGATTCCGATCATATTTTTACTCCACCAGGTCAAACC
ATTTTTGATAAAGTGTTAATTTAAAAACacattctttttgttttatcaaa
cCTGTAAACTTTCACACTGTGCTTGCGCCTCTGAGTAAACCTAGGTtaga
tttaaaaattaaaagtaagaaaaaaaccTCTAGAAAGTCTAAGAAATATG
AAATTACCAATTGTTTATTCTTCATTTTAGATCCTACACTATTTTACATT
CTCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCTACTCTT
TCTATATATACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGCTTGAAG
ATAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATCAAAAGATGATGAA
AATAACCTTCTCTTTGTCTTCAATACAATTACCGAGCGACAACAATCTAG
TCCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTGAAGAAT
ATGATGATTTTATGTTACGGAAATCCTCAAGTTATCTTGATCTAATCCAG
CCTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACTTAGATTTACAACT
TTACAAAGATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGATATGGAA
GAATTTTGTTGACTTTGCTGTATGATCCAAACCAAGAACTTTTATGTCTC
CTGATCAATTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTCCTCCAT
CAGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAAGAATGC
ACTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAATTCGTG
TTCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCATTGCAGT
TTGTGATTTTGATCGATTTTCACGGCAAACGATAATTGGCTACGTCATGT
TAAAGATGGAGGATTATAAAGATATGTTGTTGTCTAAGAGAGATTCAGGA
GAATTTTGGGCAGAGCTGCAAGATAACGATGCTATGGTAATGGTTTGTTT
CCATCactcttttacaaaaaagctAACCGCTGCCATAGATAGTCTTCTAG
CGATAAGATGAAATCGACATTTTAAGCTGAAATACTTCTACAAATAAGAT
CAGTAGCGATAAAGGTGGGTTTGTTTCACCAAAGACAGTGCTCGACTACA
AATAAGATCTGCTGAATTTTAATACAAAAGCAGCACAAGAAAATCTTACA
ACAAGGTTCAAGTTCAACGACGCTATTCAACCAAAATCTATCAATACATT
TTACCTTTCTATTTCAGCCAGGAGTAAAGAAGGGCGATTTATTGTTTTCA
CTAGCTCATCTCCCAACAGCTGGTCGCATGACGTTAGCTGTCATCCAGGC
TAAAGAATTAAACGCAAGTGCATCGGATAAAGACACCGGTAAGTTATcat
gttttcagatttttgagCAAGCTTCAATCATAGTCGTACCTCGTACCTCG
AAAAAGTATTATAGTTATTAGTTACTATGTTATAATTTTATGTAATAGTA
GCTGGAAAAGAAGGTGGGTGACGGAATTGTAAGAGATTCAGTTGACACTC
TCAAGTTCTATCTCCAAaggcaaaaaagttgaatttttttgtcgGAGATA
CCACGTATAGTTTTAATTCCATATACAAAAAAGTtcgaatgggctcttcc
agaaaaaattcgttcatggggggtggaggatatattattttgtctttgat
ctacccctggacatttcgatttttcaccccctggacgtTTTACCCCTGGA
AAAGCATCAAGTCAACCCCCTGGACACTAAAATTTACCTTGAGaattcac
cccatggacatggcagtttttcaggtttttttcaatacccctggacaata
tatcctccaccccccatgaatggtttttttctggaagagcccaatggcAT
TTTCGAGTTGGTAAGACACATGTCGACACATTGAGCTGCAAAGTCTATAT
ATAAGTAAGAAGGCACTACTTAATTTATTACATCTCCTCTCCGAACCAAC
TGCAAACGCTGTTTCATTACAGGTGTAGCAGTGAAGGTCAACCTCATCGT
GAATGGGAAAGTGGTCAAATCAAAGAAGACCTCCACCAACAAGTCACAAC
TCGATGCTCCAATATTCAACGAATCTTTTGTTTTCGAGATCACAAACGAG
CTTCTAGATCGTATCAGTTTCATCCTCATTGTATACGCTTACAGCGGGAA
TGGGAAAAGGGTGGTCGGAAAAGCTAATACCGGGCCGTATATGTATTCTA
CGGGGACAGGTTTGACGCAATGGAATGATATGTTAATGCAACCGAGAAAG
GCTGTCGCTGAATGGCATAAGTTGATGTGAATTACTGTTCATGGTTTTGT
GGACGATGAATAGAAATTGGACTGTTCCTTCCTTTTGTAAATTTAATACG
ACTTTCATCAATGAGTTATCtactttttatttgttttcggGAAAAGATCG
TTCTATTAAAGTTAATCCTGTTCACGCTTTTCACATACAGACTCATCTCT
TAAACTACGGAAATTCACCAACAA

Coding sequence (CDS) from alignment at scaffold_114:38447..42020+

>TCONS_00046584 ID=TCONS_00046584|Name=TCONS_00046584|organism=Clytia hemisphaerica|type=CDS|length=5028bp|location=Sequence derived from alignment at scaffold_114:38447..42020+ (Clytia hemisphaerica)
ATGGTTGGAATATCGTTTGAAGATCCTACACTATTTTACATTCTCATTGG
TTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCTACTCTTTCTATATA
TACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGCTTGAAGATAGCTTA
GAATCTTACTACCCTCCCTCTGTCGAATCAAAAGATGATGAAAATAACCT
TCTCTTTGTCTTCAATACAATTACCGAGCGACAACAATCTAGTCCAGTTG
CTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTGAAGAATATGATGAT
TTTATGTTACGGAAATCCTCAAGTTATCTTGATCTAATCCAGCCTAAAGT
TTCTACTGATCTTATCAGCGCTAAAGACTTAGATTTACAACTTTACAAAG
ATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGATATGGAAGAATTTTG
TTGACTTTGCTGTATGATCCAAACCAAGAACTTTTATGTCTCCTGATCAA
TTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTCCTCCATCAGCCCTT
ACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAAGAATGCACTCTAAA
ACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAATTCGTGTTCTCAGT
GCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCATTGCAGTTTGTGATT
TTGATCGATTTTCACGGCAAACGATAATTGGCTACGTCATGTTAAAGATG
GAGGATTATAAAGATATGTTGTTGTCTAAGAGAGATTCAGGAGAATTTTG
GGCAGAGCTGCAAGATAACGATGCTATGCCAGGAGTAAAGAAGGGCGATT
TATTGTTTTCACTAGCTCATCTCCCAACAGCTGGTCGCATGACGTTAGCT
GTCATCCAGGCTAAAGAATTAAACGCAAGTGCATCGGATAAAGACACCGG
TGTAGCAGTGAAGGTCAACCTCATCGTGAATGGGAAAGTGGTCAAATCAA
AGAAGACCTCCACCAACAAGTCACAACTCGATGCTCCAATATTCAACGAA
TCTTTTGTTTTCGAGATCACAAACGAGCTTCTAGATCGTATCAGTTTCAT
CCTCATTGTATACGCTTACAGCGGGAATGGGAAAAGGGTGGTCGGAAAAG
CTAATACCGGGCCGTATATGTATTCTACGGGGACAGGTTTGACGCAATGG
AATGATATGTTAATGCAACCGAGAAAGGCTGTCGCTGAATGGCATAAGTT
GATGTGAATGGTTGGAATATCGTTTGAAGATCCTACACTATTTTACATTC
TCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCTACTCTTT
CTATATATACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGCTTGAAGA
TAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATCAAAAGATGATGAAA
ATAACCTTCTCTTTGTCTTCAATACAATTACCGAGCGACAACAATCTAGT
CCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTGAAGAATA
TGATGATTTTATGTTACGGAAATCCTCAAGTTATCTTGATCTAATCCAGC
CTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACTTAGATTTACAACTT
TACAAAGATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGATATGGAAG
AATTTTGTTGACTTTGCTGTATGATCCAAACCAAGAACTTTTATGTCTCC
TGATCAATTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTCCTCCATC
AGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAAGAATGCA
CTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAATTCGTGT
TCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCATTGCAGTT
TGTGATTTTGATCGATTTTCACGGCAAACGATAATTGGCTACGTCATGTT
AAAGATGGAGGATTATAAAGATATGTTGTTGTCTAAGAGAGATTCAGGAG
AATTTTGGGCAGAGCTGCAAGATAACGATGCTATGCCAGGAGTAAAGAAG
GGCGATTTATTGTTTTCACTAGCTCATCTCCCAACAGCTGGTCGCATGAC
GTTAGCTGTCATCCAGGCTAAAGAATTAAACGCAAGTGCATCGGATAAAG
ACACCGGTGTAGCAGTGAAGGTCAACCTCATCGTGAATGGGAAAGTGGTC
AAATCAAAGAAGACCTCCACCAACAAGTCACAACTCGATGCTCCAATATT
CAACGAATCTTTTGTTTTCGAGATCACAAACGAGCTTCTAGATCGTATCA
GTTTCATCCTCATTGTATACGCTTACAGCGGGAATGGGAAAAGGGTGGTC
GGAAAAGCTAATACCGGGCCGTATATGTATTCTACGGGGACAGGTTTGAC
GCAATGGAATGATATGTTAATGCAACCGAGAAAGGCTGTCGCTGAATGGC
ATAAGTTGATGTGAATGGTTGGAATATCGTTTGAAGATCCTACACTATTT
TACATTCTCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCT
ACTCTTTCTATATATACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGC
TTGAAGATAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATCAAAAGAT
GATGAAAATAACCTTCTCTTTGTCTTCAATACAATTACCGAGCGACAACA
ATCTAGTCCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTG
AAGAATATGATGATTTTATGTTACGGAAATCCTCAAGTTATCTTGATCTA
ATCCAGCCTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACTTAGATTT
ACAACTTTACAAAGATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGAT
ATGGAAGAATTTTGTTGACTTTGCTGTATGATCCAAACCAAGAACTTTTA
TGTCTCCTGATCAATTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTC
CTCCATCAGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAA
GAATGCACTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAA
TTCGTGTTCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCAT
TGCAGTTTGTGATTTTGATCGATTTTCACGGCAAACGATAATTGGCTACG
TCATGTTAAAGATGGAGGATTATAAAGATATGTTGTTGTCTAAGAGAGAT
TCAGGAGAATTTTGGGCAGAGCTGCAAGATAACGATGCTATGCCAGGAGT
AAAGAAGGGCGATTTATTGTTTTCACTAGCTCATCTCCCAACAGCTGGTC
GCATGACGTTAGCTGTCATCCAGGCTAAAGAATTAAACGCAAGTGCATCG
GATAAAGACACCGGTGTAGCAGTGAAGGTCAACCTCATCGTGAATGGGAA
AGTGGTCAAATCAAAGAAGACCTCCACCAACAAGTCACAACTCGATGCTC
CAATATTCAACGAATCTTTTGTTTTCGAGATCACAAACGAGCTTCTAGAT
CGTATCAGTTTCATCCTCATTGTATACGCTTACAGCGGGAATGGGAAAAG
GGTGGTCGGAAAAGCTAATACCGGGCCGTATATGTATTCTACGGGGACAG
GTTTGACGCAATGGAATGATATGTTAATGCAACCGAGAAAGGCTGTCGCT
GAATGGCATAAGTTGATGTGAATGGTTGGAATATCGTTTGAAGATCCTAC
ACTATTTTACATTCTCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGG
TGGTGCTACTCTTTCTATATATACGGCGCCGAAATGAAATCGGTACCGGT
AAAGGGCTTGAAGATAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATC
AAAAGATGATGAAAATAACCTTCTCTTTGTCTTCAATACAATTACCGAGC
GACAACAATCTAGTCCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCA
GCCGCTGAAGAATATGATGATTTTATGTTACGGAAATCCTCAAGTTATCT
TGATCTAATCCAGCCTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACT
TAGATTTACAACTTTACAAAGATGAAGTACAGCAAGCGGAATCTCAAAAC
TCGGGATATGGAAGAATTTTGTTGACTTTGCTGTATGATCCAAACCAAGA
ACTTTTATGTCTCCTGATCAATTGTGGTGAAAACCTTCAATCGAAGAATA
ACAGCTCCTCCATCAGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAG
AAGCGAAGAATGCACTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGA
CGAAGAATTCGTGTTCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTC
TTCGCATTGCAGTTTGTGATTTTGATCGATTTTCACGGCAAACGATAATT
GGCTACGTCATGTTAAAGATGGAGGATTATAAAGATATGTTGTTGTCTAA
GAGAGATTCAGGAGAATTTTGGGCAGAGCTGCAAGATAACGATGCTATGC
CAGGAGTAAAGAAGGGCGATTTATTGTTTTCACTAGCTCATCTCCCAACA
GCTGGTCGCATGACGTTAGCTGTCATCCAGGCTAAAGAATTAAACGCAAG
TGCATCGGATAAAGACACCGGTGTAGCAGTGAAGGTCAACCTCATCGTGA
ATGGGAAAGTGGTCAAATCAAAGAAGACCTCCACCAACAAGTCACAACTC
GATGCTCCAATATTCAACGAATCTTTTGTTTTCGAGATCACAAACGAGCT
TCTAGATCGTATCAGTTTCATCCTCATTGTATACGCTTACAGCGGGAATG
GGAAAAGGGTGGTCGGAAAAGCTAATACCGGGCCGTATATGTATTCTACG
GGGACAGGTTTGACGCAATGGAATGATATGTTAATGCAACCGAGAAAGGC
TGTCGCTGAATGGCATAAGTTGATGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029731	XLOC_029731	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046584-protein	TCONS_00046584-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_114	supercontig	scaffold_114:38447..42020 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524819	0	0	0	1.38011	1.03465	94.6656	103.248	205.228	186.911	141.94	186.682	18.9005	20.3352	2.41388	2.15872	18.8913	23.8655	67.9236	64.2759	35.3421	37.9795	11.2226	16.6311	22.1164	23.1831	0.719631	0.460805	0.145627	0.207719

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

Blast

[Close]

BLAST of TCONS_00046584 vs. Swiss-Prot (Human)
Match: SYT6 (Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 8.002e-43
Identity = 112/313 (35.78%), Postives = 170/313 (54.31%), Query Frame = 3

Query:  453 PKVSTDLISAKDLDLQLYKDEVQQAESQNS----GYGRILLTLLYDPNQELLCLLINCGENLQSKNNSSSISPYLKVCLLPDKKRRMHSKT-RKGANPTFDEEFVFSVPGSEIGKRILRIAVCDFDRFSRQTIIGYVMLKMEDYKDMLLSKRD---SGEFWAELQDNDAMPGVKKGDLLFSLAHLPTAGRMTLAVIQAKELNASASDKDTGVAVKVNLIXXXXXXXXXXXXXXXXQLDAPIFNESFVFEITNELLDRISFILIVYAYSGNGK-RVVGKANTGPYMYSTGTGLTQWNDMLMQPRKAVAEWHKLM 1364
            P  +    S   +  +LYK +    E   S      G+I  +L YD   E L + I    +L +K+   S  PY+K+ LLPD+K ++ ++  RK  NPTFDE F F VP  E+  R L ++V DFDRFSR  +IG V+L      D L    D       W ++Q   +   V  G+++FSL +LPTAGR+TL VI+ + L A      +   VKV+L+ +G+ +K KKT+  K+ L+ P++NE+ +F+I  E +D++S ++ V  Y   G   ++G    G  + + G G   WN+ML  PRK +A WH L+
Sbjct:  195 PPAAEQPTSIGRIKPELYKQKSVDGEDAKSEATKSCGKINFSLRYDYETETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNPTFDENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVIL------DNLFEASDLSRETSIWKDIQYATSE-SVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLN-PVYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGVCRVG--ITAEGLGRDHWNEMLAYPRKPIAHWHSLV 497

The following BLAST results are available for this feature:

BLAST of TCONS_00046584 vs. Swiss-Prot (Human)

BLAST of TCONS_00046584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYT6	8.002e-43	35.78	Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=1 SV=3	[more]

You are here

TCONS_00046584 (transcript) - C. hemisphaerica