XLOC_029731 (gene) - C. hemisphaerica

Overview
NameXLOC_029731
Unique NameXLOC_029731
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_114:38447..42020+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029731 ID=XLOC_029731|Name=XLOC_029731|organism=Clytia hemisphaerica|type=gene|length=3574bp|location=Sequence derived from alignment at scaffold_114:38447..42020+ (Clytia hemisphaerica)
cttttttgatttgatttgagtaATCTTCTAGGTATGATGAAGTAATTGAC AGAACAGAGACATTTTTTGGATTGTTCGATTCCTGTGGAGAATCTTAGGG ATTAAAGGGGGGATTATAATCATTTAGAATGAgatacattttatttttat atgagAATATTACTTCAGGCANAATATTACTTGAGTCAACCCACGTATTA TTATTGGAATATATCTATGTAGTCCATAACTAGGAATCTCAGGAGCTTGC TGTCTATATGGGATGAAAGGACTGAGAAAACAGCACAGGCTACAGTCATT TTTCCTTCTTAATGAAGCAAGGTCAGGAAGGTCTaggttttcaagtaaaa aaccCGTTACCTGGCCGAAAAGAGTAGCCTTTCAACATTGTTCTAACGTT ATTTGACAATAGATGGACGTTGTTAAGGAGTAACCATTTTAAAGTAAACA TTGCTTTTAGAGTAGAATGAAATAAAACAAGAACTTTCTACTGGCGAAGA AGGAATTAGGGATTAAAGAAATGGCTGAACAAAGACAAGATGGTTGGAAT ATCGTTTGAAGGTAAGACAAGTTGCCCTTCGTATGCAGAGAAACTAATGG ATAAGCTATACTAGGCTTTTTGTACACAATAACGTTTGTCACaatttgcg actttttcgaatgtttggagctcAGGTTTTCCGATTTTTACTGAAActca tcaaagtggaactcgCCAAGTAACGGAACAAAAAGTCCCACTTTTTGACG AGGTACTCACTAACTGAGGGACTGAGAAAGAATTAATATTGCAATCCTGA ATAATACTACAAATTTGTTTACTGTACCGAGCCAACTAATCGTATCGTAG TCGGTCTATGTAAATCTGTTTACAGGACTTACGGTCGGTGGTTCAGCCAT GTTATAATTATATGAAAcagctattttagggaaaatcgGTGATTGAAATT TCCAAAGACTTTGGATTTCAAACTAATCCTCCCACAACCGATTAGGATTT ACTGATTATACTCTGATTCCGATCATATTTTTACTCCACCAGGTCAAACC ATTTTTGATAAAGTGTTAATTTAAAAACacattctttttgttttatcaaa cCTGTAAACTTTCACACTGTGCTTGCGCCTCTGAGTAAACCTAGGTtaga tttaaaaattaaaagtaagaaaaaaaccTCTAGAAAGTCTAAGAAATATG AAATTACCAATTGTTTATTCTTCATTTTAGATCCTACACTATTTTACATT CTCATTGGTTCACTGTCTGGTGTTATTCTGGTGGTGGTGGTGCTACTCTT TCTATATATACGGCGCCGAAATGAAATCGGTACCGGTAAAGGGCTTGAAG ATAGCTTAGAATCTTACTACCCTCCCTCTGTCGAATCAAAAGATGATGAA AATAACCTTCTCTTTGTCTTCAATACAATTACCGAGCGACAACAATCTAG TCCAGTTGCTAGGCAACGTTCAACACCGAACAGTCCAGCCGCTGAAGAAT ATGATGATTTTATGTTACGGAAATCCTCAAGTTATCTTGATCTAATCCAG CCTAAAGTTTCTACTGATCTTATCAGCGCTAAAGACTTAGATTTACAACT TTACAAAGATGAAGTACAGCAAGCGGAATCTCAAAACTCGGGATATGGAA GAATTTTGTTGACTTTGCTGTATGATCCAAACCAAGAACTTTTATGTCTC CTGATCAATTGTGGTGAAAACCTTCAATCGAAGAATAACAGCTCCTCCAT CAGCCCTTACCTGAAAGTGTGTTTACTACCTGATAAGAAGCGAAGAATGC ACTCTAAAACCAGGAAAGGTGCAAATCCGACTTTCGACGAAGAATTCGTG TTCTCAGTGCCGGGTTCAGAAATCGGGAAACGTATTCTTCGCATTGCAGT TTGTGATTTTGATCGATTTTCACGGCAAACGATAATTGGCTACGTCATGT TAAAGATGGAGGATTATAAAGATATGTTGTTGTCTAAGAGAGATTCAGGA GAATTTTGGGCAGAGCTGCAAGATAACGATGCTATGGTAATGGTTTGTTT CCATCactcttttacaaaaaagctAACCGCTGCCATAGATAGTCTTCTAG CGATAAGATGAAATCGACATTTTAAGCTGAAATACTTCTACAAATAAGAT CAGTAGCGATAAAGGTGGGTTTGTTTCACCAAAGACAGTGCTCGACTACA AATAAGATCTGCTGAATTTTAATACAAAAGCAGCACAAGAAAATCTTACA ACAAGGTTCAAGTTCAACGACGCTATTCAACCAAAATCTATCAATACATT TTACCTTTCTATTTCAGCCAGGAGTAAAGAAGGGCGATTTATTGTTTTCA CTAGCTCATCTCCCAACAGCTGGTCGCATGACGTTAGCTGTCATCCAGGC TAAAGAATTAAACGCAAGTGCATCGGATAAAGACACCGGTAAGTTATcat gttttcagatttttgagCAAGCTTCAATCATAGTCGTACCTCGTACCTCG AAAAAGTATTATAGTTATTAGTTACTATGTTATAATTTTATGTAATAGTA GCTGGAAAAGAAGGTGGGTGACGGAATTGTAAGAGATTCAGTTGACACTC TCAAGTTCTATCTCCAAaggcaaaaaagttgaatttttttgtcgGAGATA CCACGTATAGTTTTAATTCCATATACAAAAAAGTtcgaatgggctcttcc agaaaaaattcgttcatggggggtggaggatatattattttgtctttgat ctacccctggacatttcgatttttcaccccctggacgtTTTACCCCTGGA AAAGCATCAAGTCAACCCCCTGGACACTAAAATTTACCTTGAGaattcac cccatggacatggcagtttttcaggtttttttcaatacccctggacaata tatcctccaccccccatgaatggtttttttctggaagagcccaatggcAT TTTCGAGTTGGTAAGACACATGTCGACACATTGAGCTGCAAAGTCTATAT ATAAGTAAGAAGGCACTACTTAATTTATTACATCTCCTCTCCGAACCAAC TGCAAACGCTGTTTCATTACAGGTGTAGCAGTGAAGGTCAACCTCATCGT GAATGGGAAAGTGGTCAAATCAAAGAAGACCTCCACCAACAAGTCACAAC TCGATGCTCCAATATTCAACGAATCTTTTGTTTTCGAGATCACAAACGAG CTTCTAGATCGTATCAGTTTCATCCTCATTGTATACGCTTACAGCGGGAA TGGGAAAAGGGTGGTCGGAAAAGCTAATACCGGGCCGTATATGTATTCTA CGGGGACAGGTTTGACGCAATGGAATGATATGTTAATGCAACCGAGAAAG GCTGTCGCTGAATGGCATAAGTTGATGTGAATTACTGTTCATGGTTTTGT GGACGATGAATAGAAATTGGACTGTTCCTTCCTTTTGTAAATTTAATACG ACTTTCATCAATGAGTTATCtactttttatttgttttcggGAAAAGATCG TTCTATTAAAGTTAATCCTGTTCACGCTTTTCACATACAGACTCATCTCT TAAACTACGGAAATTCACCAACAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00046584TCONS_00046584Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00046584-proteinTCONS_00046584-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:38447..42020 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SYT5synaptotagmin-5 isoform 1 Homo Sapiens
SYT2PREDICTED: synaptotagmin-2 isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.05 0 0 0 1.38 1.03 94.67 103.25 205.23 186.91 141.94 186.68 18.9 20.34 2.41 2.16 18.89 23.87 67.92 64.28 35.34 37.98 11.22 16.63 22.12 23.18 0.72 0.46 0.15 0.21