TCONS_00046325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046325
Unique NameTCONS_00046325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046325 ID=TCONS_00046325|Name=TCONS_00046325|organism=Clytia hemisphaerica|type=transcript|length=1645bp
TAACCCGGTCGTGGAAAAAGAGTCTGGGACACAATAACAAAGATGgtaga
ttttcagaaaaaaataaattcgaaAGTACTGTCTCaccaacaaagaaaaa
gaaaccaGAGCAGACTGGCAGAAGTGGAGATGTAAGCTGATGAAATAAAT
AATGAGAGAAAAAAACATGAGTGTCGAAGACAAGAAAAAATCTGTACATC
AAAAGAATGTTATTGATGCAGCTCACAAAGAAGTTGAAAAGTATATTAAA
TTTTTCGTTTTAAAGTCATTACAAGCTATTGTATCTTCTCGAATTGGTAT
CCATAACAAAACAAGATGCAAGCCAGCCGCAAAAGGACAAGATTGGTTTA
ACATTGCATTGCATGAATGTGAGGCTAACCGTAGACTTCAAGCAAAAGTA
CGAGATATTTATGGCAAGAAAATACCAACATTATGGGATCCAATAAGTTT
AGATATCATACTGCGCACTTTTGATGGAAATTACATAATTCTAGAAACAT
GGCAATTATCAACTAATTTGGAAAACAAGGATCCAAAACATAAAAACCAC
TTTTCTATATATAATAGACTTGGCATTCTACTAAAATCTGTGCTATCAAT
ATCCAGGGTACTACCTTCTTTCAACTTGGCaaagaaaaatgagaaagact
tttctttgtttttcaaagtgCATACAGAAGTTTATTCCTTACATCAATAT
GAACTCCACAACAGTTTATCAATCGGATTCGTTAAAACCCCTATTGGCAC
TGTCAATATCAAAACAATGTACAGATCAAAAGTTTGGTTGAGTGGATCTT
TTCATGCCCACACATATAAAATTAGTGATCCTGATTCTCTTTTACCACTT
TTTAATGAGAAAGATGGTGGACTTAGCAAATCAGCTTTCCAATCAATTGA
TATGTTTGAAAATGAACTAGCATTAGCAGTTTCAGACCAGGAATGGATAA
ACAGTACATACTCTACGTCATCAAATGTACAATCAAAGACAAAACATTCA
GTGACTTCTCCTGTTGACTTTTCATCTGTTGCTGCTAGTATTGGCCATGA
AGATGGATTACGTCAAATCGCAGCATTTGTTGAGCCCTTTACTTTGAGTG
ATATTAATTTGGAGCCCTTAGACTTACCAAAACTACCACCAACACCACCT
TTCCAATCTCTGTTACCAGGAAAATCACCTACAGATAATGTGGATGCAAA
TCTAGACCATGACAAAGGTACAAAGCAGGAATCCAATTTTAAAAGCTTGC
CAATGAATAAAAGACAGTCTACAGAAATTTATAGACAAGCAGAAGCTGTG
GGGTTTGAAGATGATTTTGTTCTTGTTGAACTCAGACCAGCCTTTTTCTC
AGAAGATGATACAGTTGGAAATTTGTATAAACAATGTCAATCGCCAGTTC
CTCTTGATATTTTCACATCTTTAGAACAAGAGGACCAAGACTCAGAAAGT
ATTGATCTTGATGCACAACTTGAAAAATGTCGGAAAGAGCTCATGGAATA
TCAGGAATTTTTCAGTGACACGTTGAAAACTGAGAAAAGCATCTGATTTG
TATTACAAGAAATTTTGAAGTATTTagcttttaaaagaatttctcatACC
CTAATCTTTTAAGTCAAAGcgataaatataatttttttaatcaaa
Run BLAST on NCBI

protein sequence of TCONS_00046325-protein

>TCONS_00046325-protein ID=TCONS_00046325-protein|Name=TCONS_00046325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MREKNMSVEDKKKSVHQKNVIDAAHKEVEKYIKFFVLKSLQAIVSSRIGI
HNKTRCKPAAKGQDWFNIALHECEANRRLQAKVRDIYGKKIPTLWDPISL
DIILRTFDGNYIILETWQLSTNLENKDPKHKNHFSIYNRLGILLKSVLSI
SRVLPSFNLAKKNEKDFSLFFKVHTEVYSLHQYELHNSLSIGFVKTPIGT
VNIKTMYRSKVWLSGSFHAHTYKISDPDSLLPLFNEKDGGLSKSAFQSID
MFENELALAVSDQEWINSTYSTSSNVQSKTKHSVTSPVDFSSVAASIGHE
DGLRQIAAFVEPFTLSDINLEPLDLPKLPPTPPFQSLLPGKSPTDNVDAN
LDHDKGTKQESNFKSLPMNKRQSTEIYRQAEAVGFEDDFVLVELRPAFFS
EDDTVGNLYKQCQSPVPLDIFTSLEQEDQDSESIDLDAQLEKCRKELMEY
QEFFSDTLKTEKSI
Run BLAST on NCBI

transcript from alignment at scaffold_108:173025..174669

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046325 ID=TCONS_00046325|Name=TCONS_00046325|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at scaffold_108:173025..174669 (Clytia hemisphaerica)
tttgattaaaaaaattatatttatcgCTTTGACTTAAAAGATTAGGGTat
gagaaattcttttaaaagctAAATACTTCAAAATTTCTTGTAATACAAAT
CAGATGCTTTTCTCAGTTTTCAACGTGTCACTGAAAAATTCCTGATATTC
CATGAGCTCTTTCCGACATTTTTCAAGTTGTGCATCAAGATCAATACTTT
CTGAGTCTTGGTCCTCTTGTTCTAAAGATGTGAAAATATCAAGAGGAACT
GGCGATTGACATTGTTTATACAAATTTCCAACTGTATCATCTTCTGAGAA
AAAGGCTGGTCTGAGTTCAACAAGAACAAAATCATCTTCAAACCCCACAG
CTTCTGCTTGTCTATAAATTTCTGTAGACTGTCTTTTATTCATTGGCAAG
CTTTTAAAATTGGATTCCTGCTTTGTACCTTTGTCATGGTCTAGATTTGC
ATCCACATTATCTGTAGGTGATTTTCCTGGTAACAGAGATTGGAAAGGTG
GTGTTGGTGGTAGTTTTGGTAAGTCTAAGGGCTCCAAATTAATATCACTC
AAAGTAAAGGGCTCAACAAATGCTGCGATTTGACGTAATCCATCTTCATG
GCCAATACTAGCAGCAACAGATGAAAAGTCAACAGGAGAAGTCACTGAAT
GTTTTGTCTTTGATTGTACATTTGATGACGTAGAGTATGTACTGTTTATC
CATTCCTGGTCTGAAACTGCTAATGCTAGTTCATTTTCAAACATATCAAT
TGATTGGAAAGCTGATTTGCTAAGTCCACCATCTTTCTCATTAAAAAGTG
GTAAAAGAGAATCAGGATCACTAATTTTATATGTGTGGGCATGAAAAGAT
CCACTCAACCAAACTTTTGATCTGTACATTGTTTTGATATTGACAGTGCC
AATAGGGGTTTTAACGAATCCGATTGATAAACTGTTGTGGAGTTCATATT
GATGTAAGGAATAAACTTCTGTATGcactttgaaaaacaaagaaaagtct
ttctcatttttctttGCCAAGTTGAAAGAAGGTAGTACCCTGGATATTGA
TAGCACAGATTTTAGTAGAATGCCAAGTCTATTATATATAGAAAAGTGGT
TTTTATGTTTTGGATCCTTGTTTTCCAAATTAGTTGATAATTGCCATGTT
TCTAGAATTATGTAATTTCCATCAAAAGTGCGCAGTATGATATCTAAACT
TATTGGATCCCATAATGTTGGTATTTTCTTGCCATAAATATCTCGTACTT
TTGCTTGAAGTCTACGGTTAGCCTCACATTCATGCAATGCAATGTTAAAC
CAATCTTGTCCTTTTGCGGCTGGCTTGCATCTTGTTTTGTTATGGATACC
AATTCGAGAAGATACAATAGCTTGTAATGACTTTAAAACGAAAAATTTAA
TATACTTTTCAACTTCTTTGTGAGCTGCATCAATAACATTCTTTTGATGT
ACAGATTTTTTCTTGTCTTCGACACTCATGTTTTTTTCTCTCATTATTTA
TTTCATCAGCTTACATCTCCACTTCTGCCAGTCTGCTCtggtttcttttt
ctttgttggtGAGACAGTACTttcgaatttatttttttctgaaaatctac
CATCTTTGTTATTGTGTCCCAGACTCTTTTTCCACGACCGGGTTA

Coding sequence (CDS) from alignment at scaffold_108:173025..174669

>TCONS_00046325 ID=TCONS_00046325|Name=TCONS_00046325|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_108:173025..174669 (Clytia hemisphaerica)
TCAGATGCTTTTCTCAGTTTTCAACGTGTCACTGAAAAATTCCTGATATT
CCATGAGCTCTTTCCGACATTTTTCAAGTTGTGCATCAAGATCAATACTT
TCTGAGTCTTGGTCCTCTTGTTCTAAAGATGTGAAAATATCAAGAGGAAC
TGGCGATTGACATTGTTTATACAAATTTCCAACTGTATCATCTTCTGAGA
AAAAGGCTGGTCTGAGTTCAACAAGAACAAAATCATCTTCAAACCCCACA
GCTTCTGCTTGTCTATAAATTTCTGTAGACTGTCTTTTATTCATTGGCAA
GCTTTTAAAATTGGATTCCTGCTTTGTACCTTTGTCATGGTCTAGATTTG
CATCCACATTATCTGTAGGTGATTTTCCTGGTAACAGAGATTGGAAAGGT
GGTGTTGGTGGTAGTTTTGGTAAGTCTAAGGGCTCCAAATTAATATCACT
CAAAGTAAAGGGCTCAACAAATGCTGCGATTTGACGTAATCCATCTTCAT
GGCCAATACTAGCAGCAACAGATGAAAAGTCAACAGGAGAAGTCACTGAA
TGTTTTGTCTTTGATTGTACATTTGATGACGTAGAGTATGTACTGTTTAT
CCATTCCTGGTCTGAAACTGCTAATGCTAGTTCATTTTCAAACATATCAA
TTGATTGGAAAGCTGATTTGCTAAGTCCACCATCTTTCTCATTAAAAAGT
GGTAAAAGAGAATCAGGATCACTAATTTTATATGTGTGGGCATGAAAAGA
TCCACTCAACCAAACTTTTGATCTGTACATTGTTTTGATATTGACAGTGC
CAATAGGGGTTTTAACGAATCCGATTGATAAACTGTTGTGGAGTTCATAT
TGATGTAAGGAATAAACTTCTGTATGcactttgaaaaacaaagaaaagtc
tttctcatttttctttGCCAAGTTGAAAGAAGGTAGTACCCTGGATATTG
ATAGCACAGATTTTAGTAGAATGCCAAGTCTATTATATATAGAAAAGTGG
TTTTTATGTTTTGGATCCTTGTTTTCCAAATTAGTTGATAATTGCCATGT
TTCTAGAATTATGTAATTTCCATCAAAAGTGCGCAGTATGATATCTAAAC
TTATTGGATCCCATAATGTTGGTATTTTCTTGCCATAAATATCTCGTACT
TTTGCTTGAAGTCTACGGTTAGCCTCACATTCATGCAATGCAATGTTAAA
CCAATCTTGTCCTTTTGCGGCTGGCTTGCATCTTGTTTTGTTATGGATAC
CAATTCGAGAAGATACAATAGCTTGTAATGACTTTAAAACGAAAAATTTA
ATATACTTTTCAACTTCTTTGTGAGCTGCATCAATAACATTCTTTTGATG
TACAGATTTTTTCTTGTCTTCGACACTCATGTTTTTTTCTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029575XLOC_029575Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046325-proteinTCONS_00046325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046325-exon-scaffold_108-1491911889:173025..174669TCONS_00046325-exon-scaffold_108-1491911889:173025..174669Clytia hemisphaericaexon
TCONS_00046325-exon-scaffold_108-1510915933:173025..174669TCONS_00046325-exon-scaffold_108-1510915933:173025..174669Clytia hemisphaericaexon
TCONS_00046325-exon-scaffold_108-1575043694:173025..174669TCONS_00046325-exon-scaffold_108-1575043694:173025..174669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:173025..174669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.8906	2.33694	1.98611	1.99783	10.5616	6.45032	6.22563	7.07729	2.89387	3.91977	3.62941	3.14272	3.99277	2.44014	3.43707	4.1251	3.96899	5.28471	3.67682	5.38653	5.42237	3.87988	5.6938	5.35676	7.6394	9.01962	12.1956	7.05007	14.698	14.2765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018731Atg13
Vocabulary: Cellular Component
TermDefinition
GO:1990316ATG1/ULK1 kinase complex
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
cellular_component GO:1990316 ATG1/ULK1 kinase complex
Blast
[Close]
BLAST of TCONS_00046325 vs. Swiss-Prot (Human)
Match: ATG13 (Autophagy-related protein 13 OS=Homo sapiens GN=ATG13 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.069e-24
Identity = 60/185 (32.43%), Postives = 110/185 (59.46%), Query Frame = 2 
Query:  224 HKEVEKYIKFFVLKSLQAIVSSRIGIHNKTRCKPAAKGQDWFNIALHECEANRRLQAKVRDIYGKKIPTLWDPISLDIILRTFDGNYIILETWQLSTNLENKDPKHKNHFSIYNRLGILLKSVLSISRVLPSFNLAKKNEKDFSLFFKVH-TEVYSLHQYELHNSLSIGFVKTPIGTVNIKTMYR 775
             K+++K+IKFF LK++Q IV +R+G    TR   +  G DWFN+A+ +      +  + +     ++P +   + ++I L+T +G+ + LE W L  N E  D + K  +++YNRL +LLKS+L+I+RV P++ L++K   ++ + ++++  EV      E   ++ +G V TP+GT+ +   YR
Sbjct:   10 RKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIP---EVTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMN-EKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYR 190
The following BLAST results are available for this feature:
BLAST of TCONS_00046325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATG139.069e-2432.43Autophagy-related protein 13 OS=Homo sapiens GN=AT... [more]
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