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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045941 ID=TCONS_00045941|Name=TCONS_00045941|organism=Clytia hemisphaerica|type=transcript|length=5505bpRun BLAST on NCBI protein sequence of TCONS_00045941-protein >TCONS_00045941-protein ID=TCONS_00045941-protein|Name=TCONS_00045941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1185bp MESEYLADPREDVVNSNTVDDNSNGLPQNGEKEQKNAIDEEKKEELDEKIRun BLAST on NCBI transcript from alignment at scaffold_104:145413..164746+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045941 ID=TCONS_00045941|Name=TCONS_00045941|organism=Clytia hemisphaerica|type=transcript|length=19334bp|location=Sequence derived from alignment at scaffold_104:145413..164746+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_104:145413..164746+ >TCONS_00045941 ID=TCONS_00045941|Name=TCONS_00045941|organism=Clytia hemisphaerica|type=CDS|length=92508bp|location=Sequence derived from alignment at scaffold_104:145413..164746+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045941 vs. Swiss-Prot (Human)
Match: MCF2L (Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L PE=1 SV=2) HSP 1 Score: 433.335 bits (1113), Expect = 6.164e-128 Identity = 326/1121 (29.08%), Postives = 537/1121 (47.90%), Query Frame = 2
Query: 323 LQQKYIYLNGCLDKEQHPILICSFNRSLGSLDQDDFKSTVNYFKEISSVLWERCKFLVIIDRQHGKWNSVK-SILSNLQVFDADEIFKILLLKPQGFLQR-------HFGNSDVKQIKELSKHELVFLDNPTMLEDYVELACLPDEFGGFDSFNVNEWVEYTTAVERFQQTCIKIRNRVKEFRT-LFGSRVP---------LCSVTEIEQQAKQQRQMVTDIQEDIKCASEIAETLAPIVDKPLSHSRKGPSALERY--NSAQLKAYTECLSKYHDEIEALWQKQANFHEQSKELCGFEESFGQISIKLMQITSILDGRTDIGDSLSSANELMYELDDFELKRKEPYNEMMKLKEKGMQMVAFFGEFAKESVVVRCNEIKHLLKDFEIKLEARKQLLQVSLDVFTCLDQIEKWCQVGVELLASQPVEAFNQEEAAKKCYEDIQNFMKNKSGISMNRIRKLKELCQKLGNPSIDERCENSFKRIQEVTEMLEKREASLKKVALKPKRPVQ----RVEAIVINKDYDLQKEKGSQSXXXXXXXXXXXXXGGVTKESIEVVVTDDIEKYKRNKTFRKSLRLSFKRPVSSPAQLQLAEYEEDPEHRKKIRFIVAELCETEIIYVKDLKEIIEGYFAMFDNP--SFNVPEQFRSQKAVIFGNIDEIYIFHSEIFLEDLKACKDAPYMAGHCFLDKKEEFQFYATYCKNKPKSELLRNELHKTTFLQAIQKQLGHPLNLDSYLLKPVQRITKYKLLLTEMLKYVSKKNPAYSDILEALVCMKRVLRNVNDVMHSSGLTGFPKNLDEQGKLLLQDSFTVWEGXXXXXXXXXXXXGAK--HRQVFLFEKCLIFSKKEVENGRD---LGTYQYKGHIWTADIGVTESVRGDANRFEVW--SKIVVYTLQANNTDMKTNWLSEIRKILMSQFEGAKETLTQKLSSDIYKSDDVKQQLRQKLKFLDPSLRASTPVLNLNPSDIGDRPRMNTFGECSPKKEKLRACTSESNLLDDNRSRSTDSLWSDSEFEDDAENAVIEETTNLPDDDANKTTSEEIF-----EEE--VSPRTQGEIQFCSVADYEAMEETELSLKYGDKVSLIKEGDDGWWYCKSLETNQEGWAPSGYLEI 3565
L++++ YL+G ++ P++ + + +F++ + Y I S+ F+++IDR+ KW SVK S+L F A+ + +L+L+P GF QR F D K K ++ L + L Y++ + L ++ GG + + W+ TA+E F + ++ F T L + +P LC+ TE + +AK+ D++ +K + E+L + L PS + N A ++ L++ + W K EQ +L FE+ F ++ L + + TDIG+SL+ L+ +L FE K L G Q++ +A +S+ +C E++HL F ++ R+ LL SL++ L+ KWC G+ LLASQPV+ ++ A+ ++I+ F++ + + + + + + + N + E F++ + E+ +R+ASLKK+A + RPVQ R EA+ + +GS++ GG + Y+R K+ +S Q + + EE+ R +++EL +TE YV++L ++EGY A DNP + + ++K V+FGN++EIY FH+ IFL +L+ D P + G CFL++ E+FQ Y YC+NKP+SE L + F Q Q++L H L+LDSYLLKPVQRITKY+LLL EMLKY S+ D+ EAL + +L+ VND MH +TG+ NL + GKLL+Q SF+VW K K K R +FL EK ++F KK ENG +Y YK + A +G+TE+V+GDA +FE+W ++ VY +QA ++K W++EIRK+L SQ + +E + L Q P+ +++P G+ + E L S + L + WS + +A P+DD +++EE EE+ + P+ ++ VAD+E L ++ GD V L++EGD+G WY + T +EGW P+ L +
Sbjct: 76 LKKRFAYLSGGRGQDGSPVITFPDYPAFSEIPDKEFQNVMTYLTSIPSLQDAGIGFILVIDRRRDKWTSVKASVLRIAASFPAN-LQLVLVLRPTGFFQRTLSDIAFKFNRDDFKM-----KVPVIMLSSVPDLHGYIDKSQLTEDLGGTLDYCHSRWLCQRTAIESFALMVKQTAQMLQSFGTELAETELPNDVQSTSSVLCAHTEKKDKAKE------DLRLALKEGHSVLESL-----RELQAEGSEPSVNQDQLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQCLQLRHFEQGFREVKAILDAASQKIATFTDIGNSLAHVEHLLRDLASFEEKSGVAVERARALSLDGEQLIGN-KHYAVDSIRPKCQELRHLCDQFSAEIARRRGLLSKSLELHRRLETSMKWCDEGIYLLASQPVDKCQSQDGAEAALQEIEKFLETGAENKIQELNAIYKEYESILNQDLMEHVRKVFQKQASMEEVFHRRQASLKKLAARQTRPVQPVAPRPEALAKSPCPSPGIRRGSENSSSE---------GGALRRG----------PYRRAKS-----------EMSESRQGRGSAGEEEESLAILRRHVMSELLDTERAYVEELLCVLEGYAAEMDNPLMAHLLSTGLHNKKDVLFGNMEEIYHFHNRIFLRELENYTDCPELVGRCFLERMEDFQIYEKYCQNKPRSESLWRQCSDCPFFQECQRKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKY-SRNCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKRGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMAAVGITENVKGDAKKFEIWYNAREEVYIVQAPTPEIKAAWVNEIRKVLTSQLQACREASQHR-------------ALEQSQSLPLPAPTSTSP-------SRGNSRNIKKLEERKTDPLSLEGYVSSAPL---TKPPEKGKGWSKTSHSLEA-----------PEDDGGWSSAEEQINSSDAEEDGGLGPKKLVPGKYTVVADHEKGGPDALRVRSGDVVELVQEGDEGLWYVRDPTTGKEGWVPASSLSV 1113 The following BLAST results are available for this feature:
BLAST of TCONS_00045941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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