TCONS_00045735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045735
Unique NameTCONS_00045735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045735 ID=TCONS_00045735|Name=TCONS_00045735|organism=Clytia hemisphaerica|type=transcript|length=492bp
TTCAAGGTGGAATGGAAAGTATGTCAATCACGGAGGCTTTTGGAGAGTTC
CGGACAGGAAAGACACAACTTTCACATACTTTATGTGTTACCGCACAATT
ACCTGGCGAAAACGGATATACTGGTGGAAAAGTTATGTTCATTGATACGG
AAAACACTTTCAGACCGGAAAGATTGAAATCCATTGCTGATAGATTTAAT
CTTGACCATGACGCGATGTTGAACAATGTCATTTTCGTGCGAGCTTACAC
TAGTGAACATCAGTTCGAAATCTTAGATGGTGTGGCAGCGAAATTTCACG
AAGAAGCCGGTGTTTTTAAGTTACTCaTTATCGATTCGATCATGGCTCTG
TTTCGCGTTGATTTTTGCGGCCGCGGAGAGTTAGCAGACCGTCAACAAAA
GCTTGCACAGATGTTGTCCAAATTACAAAAGATTTCCGAAGAATACAACG
TTGCTATCTTCATTACAAATCAGATGACCGCAGATCCCGGAG
Run BLAST on NCBI

protein sequence of TCONS_00045735-protein

>TCONS_00045735-protein ID=TCONS_00045735-protein|Name=TCONS_00045735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
QGGMESMSITEAFGEFRTGKTQLSHTLCVTAQLPGENGYTGGKVMFIDTE
NTFRPERLKSIADRFNLDHDAMLNNVIFVRAYTSEHQFEILDGVAAKFHE
EAGVFKLLIIDSIMALFRVDFCGRGELADRQQKLAQMLSKLQKISEEYNV
AIFITNQMTADPG
Run BLAST on NCBI

transcript from alignment at scaffold_100:516090..518044-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045735 ID=TCONS_00045735|Name=TCONS_00045735|organism=Clytia hemisphaerica|type=transcript|length=1955bp|location=Sequence derived from alignment at scaffold_100:516090..518044- (Clytia hemisphaerica)
TTCAAGGTGGAATGGAAAGTATGTCAATCACGGAGGCTTTTGGAGGTAAT
TTATTATATTCATTGAAGACTTCCATAAGATTTTCAAACTTATATCTATA
AAAAAATGTCGACTAGAATTTGAATGTTCAATTATAATTGGACCAATTTT
ATTCCAAACTTTGCCGTTTTATTGAATTTCGACCGTTTAGGATGATCGCA
TTTCTATCGATTTTAATATGTTTGATTAATTTGATTGTCGGCTCAGATTG
ATTGATATTTATGAATTTTAGAGAGAGCTTAGAATTAGCCCTTTGAAATA
TATCTAACCATTTCTAACGTTTCAGATTGTACGGTATTCTTTTTCTAGAG
TTCCGGACAGGAAAGACACAACTTTCACATACTTTATGTGGTAAGAACTC
AATATCCCTCAACATTTTAAGGAATTGAATTTTCTGTCATGCAGTTTCTT
TTGATGCTACTGTTAAATTAAAACGTGGCGATTTTATATAATTTCTCTTC
GTGACATAATATTGAACACCGGAATCATATTTTTTCAGTTACCGCACAAT
TACCTGGCGAAAACGGATATACTGGTGGAAAAGTTATGTTCATTGATACG
GAAAACACTTTCAGACCGGAAAGATTGAAATCCATTGCTGATAGATTTAA
TCTTGACCATGACGCGATGTTGAACAATGTCATTTTCGTGCGAGCTTACA
CTAGTGAACATCAGTTCGAAATCTTAGATGGTGTGGCAGCGAAATTTCAC
GAAGAAGCCGGTGTTTTTAAGTTACTCGTAAGGTTGCTAAATTTATTTTT
TTGTAGACAACAGTAAGCTCTTAGCCCGAAATAATGCCAACTTTCCTTTT
CACAATGCGTTTGATAAATAATTCGAGATAATGTAAAAAATAGTAAAGAG
TAAAAAGGGGTTACGCAAACTCGGGATGCCCAAGAAATAAGCAATTGCTG
TAGGCTCCGCCAGGTTCAGGTCAGTTTGTGTGTACGGTAAGATGAAAATG
TTTCATTTTTTAGATTATCGATTCGATCATGGCTCTGTTTCGCGTTGATT
TTTGCGGCCGCGGAGAGTTAGCAGACCGTCAACAAAAGCTTGCACAGATG
TTGTCCAAATTACAAAAGATTTCCGAAGGTAACTAAAGGGAACTCAACAC
ATGAATATAACAAGTGAAAACTGCTGAAGTTTTGAAATCAAGATTTTCAA
CACGATTTTTTTTTGCATTTCAGCTTGAAGGTCCGTTTAGCATTTTTATC
AAATTTGAGCCTCAGTATACTCTCGGGTACCTAATAGCCGGGGGGATTGG
AATAAACGGGGGGGGGGGGTGGAATAAAAATGTCCTGGGTGGAAAATTTT
TGAAAAATTAATTAGCGGGGGGGGGGGACGGCTATTAGGTACCCGAGAGT
ACTTATAAAACGAATGTATTTTCACTTTTTAGAGACAGAAATTTACACGC
TTTTTTATTAGAATAACTTTTGTAAGAATATCAGGGTGAGATTCCGGAGC
CTATTGTTTAGAACAATAGAAAAATAACTCACTTTCAGCCAAAAAACACT
ATGTTATAAAAAACCGTATTTTGATAGATTTTACTCCAGGCTAAAAAAAT
TCGAAAAGCCTTGAATTAGAAATTCTTTTCTACTTTCAGAATACAACGTT
GCTATCTTCATTACAAATCAGGTAAAGATTAAAGTCGATACCTTTCTTCA
CAATCAGTAGTTTTGAGAATCCGAGATCGAAAGGCAAAATTACATCGGTA
TTCCAGTATATTGTATTTTGTACCCTCGGAAGCCCCCCCAACGCACCCCA
ATATTTTCGAGGTACAGTACTGTGTTATCGAAGGTAATTTAGTATGGTGT
TCTCTTAAAATTAATCCTGGTTCTGTATGCAGCAAAAAAATCTCATTACA
CCCTAAATTATGTACCCTTTGTCTTTTATTTTCTAGATGACCGCAGATCC
CGGAG

Coding sequence (CDS) from alignment at scaffold_100:516090..518044-

>TCONS_00045735 ID=TCONS_00045735|Name=TCONS_00045735|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_100:516090..518044- (Clytia hemisphaerica)
ATGACCGCAGATCCCGGAAATACAACGTTGCTATCTTCATTACAAATCAG
ATTATCGATTCGATCATGGCTCTGTTTCGCGTTGATTTTTGCGGCCGCGG
AGAGTTAGCAGACCGTCAACAAAAGCTTGCACAGATGTTGTCCAAATTAC
AAAAGATTTCCGAAGTTACCGCACAATTACCTGGCGAAAACGGATATACT
GGTGGAAAAGTTATGTTCATTGATACGGAAAACACTTTCAGACCGGAAAG
ATTGAAATCCATTGCTGATAGATTTAATCTTGACCATGACGCGATGTTGA
ACAATGTCATTTTCGTGCGAGCTTACACTAGTGAACATCAGTTCGAAATC
TTAGATGGTGTGGCAGCGAAATTTCACGAAGAAGCCGGTGTTTTTAAGTT
ACTCAGTTCCGGACAGGAAAGACACAACTTTCACATACTTTATGTGCAAG
GTGGAATGGAAAGTATGTCAATCACGGAGGCTTTTGGAGATGACCGCAGA
TCCCGGAAATACAACGTTGCTATCTTCATTACAAATCAGATTATCGATTC
GATCATGGCTCTGTTTCGCGTTGATTTTTGCGGCCGCGGAGAGTTAGCAG
ACCGTCAACAAAAGCTTGCACAGATGTTGTCCAAATTACAAAAGATTTCC
GAAGTTACCGCACAATTACCTGGCGAAAACGGATATACTGGTGGAAAAGT
TATGTTCATTGATACGGAAAACACTTTCAGACCGGAAAGATTGAAATCCA
TTGCTGATAGATTTAATCTTGACCATGACGCGATGTTGAACAATGTCATT
TTCGTGCGAGCTTACACTAGTGAACATCAGTTCGAAATCTTAGATGGTGT
GGCAGCGAAATTTCACGAAGAAGCCGGTGTTTTTAAGTTACTCAGTTCCG
GACAGGAAAGACACAACTTTCACATACTTTATGTGCAAGGTGGAATGGAA
AGTATGTCAATCACGGAGGCTTTTGGAGATGACCGCAGATCCCGGAAATA
CAACGTTGCTATCTTCATTACAAATCAGATTATCGATTCGATCATGGCTC
TGTTTCGCGTTGATTTTTGCGGCCGCGGAGAGTTAGCAGACCGTCAACAA
AAGCTTGCACAGATGTTGTCCAAATTACAAAAGATTTCCGAAGTTACCGC
ACAATTACCTGGCGAAAACGGATATACTGGTGGAAAAGTTATGTTCATTG
ATACGGAAAACACTTTCAGACCGGAAAGATTGAAATCCATTGCTGATAGA
TTTAATCTTGACCATGACGCGATGTTGAACAATGTCATTTTCGTGCGAGC
TTACACTAGTGAACATCAGTTCGAAATCTTAGATGGTGTGGCAGCGAAAT
TTCACGAAGAAGCCGGTGTTTTTAAGTTACTCAGTTCCGGACAGGAAAGA
CACAACTTTCACATACTTTATGTGCAAGGTGGAATGGAAAGTATGTCAAT
CACGGAGGCTTTTGGAGATGACCGCAGATCCCGGAAATACAACGTTGCTA
TCTTCATTACAAATCAGATTATCGATTCGATCATGGCTCTGTTTCGCGTT
GATTTTTGCGGCCGCGGAGAGTTAGCAGACCGTCAACAAAAGCTTGCACA
GATGTTGTCCAAATTACAAAAGATTTCCGAAGTTACCGCACAATTACCTG
GCGAAAACGGATATACTGGTGGAAAAGTTATGTTCATTGATACGGAAAAC
ACTTTCAGACCGGAAAGATTGAAATCCATTGCTGATAGATTTAATCTTGA
CCATGACGCGATGTTGAACAATGTCATTTTCGTGCGAGCTTACACTAGTG
AACATCAGTTCGAAATCTTAGATGGTGTGGCAGCGAAATTTCACGAAGAA
GCCGGTGTTTTTAAGTTACTCAGTTCCGGACAGGAAAGACACAACTTTCA
CATACTTTATGTGCAAGGTGGAATGGAAAGTATGTCAATCACGGAGGCTT
TTGGAGATGACCGCAGATCCCGGAAATACAACGTTGCTATCTTCATTACA
AATCAGATTATCGATTCGATCATGGCTCTGTTTCGCGTTGATTTTTGCGG
CCGCGGAGAGTTAGCAGACCGTCAACAAAAGCTTGCACAGATGTTGTCCA
AATTACAAAAGATTTCCGAAGTTACCGCACAATTACCTGGCGAAAACGGA
TATACTGGTGGAAAAGTTATGTTCATTGATACGGAAAACACTTTCAGACC
GGAAAGATTGAAATCCATTGCTGATAGATTTAATCTTGACCATGACGCGA
TGTTGAACAATGTCATTTTCGTGCGAGCTTACACTAGTGAACATCAGTTC
GAAATCTTAGATGGTGTGGCAGCGAAATTTCACGAAGAAGCCGGTGTTTT
TAAGTTACTCAGTTCCGGACAGGAAAGACACAACTTTCACATACTTTATG
TGCAAGGTGGAATGGAAAGTATGTCAATCACGGAGGCTTTTGGAGATGAC
CGCAGATCCCGGAAATACAACGTTGCTATCTTCATTACAAATCAGATTAT
CGATTCGATCATGGCTCTGTTTCGCGTTGATTTTTGCGGCCGCGGAGAGT
TAGCAGACCGTCAACAAAAGCTTGCACAGATGTTGTCCAAATTACAAAAG
ATTTCCGAAGTTACCGCACAATTACCTGGCGAAAACGGATATACTGGTGG
AAAAGTTATGTTCATTGATACGGAAAACACTTTCAGACCGGAAAGATTGA
AATCCATTGCTGATAGATTTAATCTTGACCATGACGCGATGTTGAACAAT
GTCATTTTCGTGCGAGCTTACACTAGTGAACATCAGTTCGAAATCTTAGA
TGGTGTGGCAGCGAAATTTCACGAAGAAGCCGGTGTTTTTAAGTTACTCA
GTTCCGGACAGGAAAGACACAACTTTCACATACTTTATGTGCAAGGTGGA
ATGGAAAGTATGTCAATCACGGAGGCTTTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029228XLOC_029228Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045735-proteinTCONS_00045735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045735-exon-scaffold_100-1575043694:518000..518044TCONS_00045735-exon-scaffold_100-1575043694:518000..518044Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1575043694:517655..517696TCONS_00045735-exon-scaffold_100-1575043694:517655..517696Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1575043694:517268..517506TCONS_00045735-exon-scaffold_100-1575043694:517268..517506Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1575043694:516917..517031TCONS_00045735-exon-scaffold_100-1575043694:516917..517031Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1575043694:516374..516405TCONS_00045735-exon-scaffold_100-1575043694:516374..516405Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1575043694:516090..516108TCONS_00045735-exon-scaffold_100-1575043694:516090..516108Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:518000..518044TCONS_00045735-exon-scaffold_100-1510915933:518000..518044Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:517655..517696TCONS_00045735-exon-scaffold_100-1510915933:517655..517696Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:517268..517506TCONS_00045735-exon-scaffold_100-1510915933:517268..517506Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:516917..517031TCONS_00045735-exon-scaffold_100-1510915933:516917..517031Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:516374..516405TCONS_00045735-exon-scaffold_100-1510915933:516374..516405Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1510915933:516090..516108TCONS_00045735-exon-scaffold_100-1510915933:516090..516108Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:518000..518044TCONS_00045735-exon-scaffold_100-1491911889:518000..518044Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:517655..517696TCONS_00045735-exon-scaffold_100-1491911889:517655..517696Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:517268..517506TCONS_00045735-exon-scaffold_100-1491911889:517268..517506Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:516917..517031TCONS_00045735-exon-scaffold_100-1491911889:516917..517031Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:516374..516405TCONS_00045735-exon-scaffold_100-1491911889:516374..516405Clytia hemisphaericaexon
TCONS_00045735-exon-scaffold_100-1491911889:516090..516108TCONS_00045735-exon-scaffold_100-1491911889:516090..516108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:516090..518044 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.27106	7.70167	1.70331	1.52755	0.676236	0.935149	0.483522	0.452667	0.950769	0.130853	0.762057	0.333964	0	0.173172	0.0711853	0.0763927	1.03521	0.482296	0	0.139451	0.363624	0.354726	2.5873	2.09087	85.8727	88.6518	0	0.183454	0.834859	1.98471
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR033925Rad51_DMC1_RadA
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Blast
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BLAST of TCONS_00045735 vs. Swiss-Prot (Human)
Match: DMC1 (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.250e-101
Identity = 137/162 (84.57%), Postives = 154/162 (95.06%), Query Frame = 3 
Query:    6 GGMESMSITEAFGEFRTGKTQLSHTLCVTAQLPGENGYTGGKVMFIDTENTFRPERLKSIADRFNLDHDAMLNNVIFVRAYTSEHQFEILDGVAAKFHEEAGVFKLLIIDSIMALFRVDFCGRGELADRQQKLAQMLSKLQKISEEYNVAIFITNQMTADPG 491
            GG+ESM+ITEAFGEFRTGKTQLSHTLCVTAQLPG  GY GGK++FIDTENTFRP+RL+ IADRFN+DHDA+L+NV++ RAYTSEHQ E+LD VAAKFHEEAG+FKLLIIDSIMALFRVDF GRGELA+RQQKLAQMLS+LQKISEEYNVA+F+TNQMTADPG
Sbjct:  114 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275
The following BLAST results are available for this feature:
BLAST of TCONS_00045735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMC12.250e-10184.57Meiotic recombination protein DMC1/LIM15 homolog O... [more]
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