TCONS_00045735-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045735-protein
Unique NameTCONS_00045735-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045735-protein ID=TCONS_00045735-protein|Name=TCONS_00045735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
QGGMESMSITEAFGEFRTGKTQLSHTLCVTAQLPGENGYTGGKVMFIDTE
NTFRPERLKSIADRFNLDHDAMLNNVIFVRAYTSEHQFEILDGVAAKFHE
EAGVFKLLIIDSIMALFRVDFCGRGELADRQQKLAQMLSKLQKISEEYNV
AIFITNQMTADPG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029228XLOC_029228Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045735TCONS_00045735Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR033925Rad51_DMC1_RadA
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..147
NoneNo IPR availableGENE3D3.40.50.300coord: 1..163
e-value: 8.1E-30
score: 103.8
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 1..162
e-value: 1.0E-67
score: 228.0
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 1..158
score: 39.41
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 2..163
e-value: 4.73586E-86
score: 253.66
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..162

Blast
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BLAST of TCONS_00045735-protein vs. Swiss-Prot (Human)
Match: DMC1 (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 4.685e-103
Identity = 137/162 (84.57%), Postives = 154/162 (95.06%), Query Frame = 0 
Query:    2 GGMESMSITEAFGEFRTGKTQLSHTLCVTAQLPGENGYTGGKVMFIDTENTFRPERLKSIADRFNLDHDAMLNNVIFVRAYTSEHQFEILDGVAAKFHEEAGVFKLLIIDSIMALFRVDFCGRGELADRQQKLAQMLSKLQKISEEYNVAIFITNQMTADPG 163
            GG+ESM+ITEAFGEFRTGKTQLSHTLCVTAQLPG  GY GGK++FIDTENTFRP+RL+ IADRFN+DHDA+L+NV++ RAYTSEHQ E+LD VAAKFHEEAG+FKLLIIDSIMALFRVDF GRGELA+RQQKLAQMLS+LQKISEEYNVA+F+TNQMTADPG
Sbjct:  114 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275
The following BLAST results are available for this feature:
BLAST of TCONS_00045735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMC14.685e-10384.57Meiotic recombination protein DMC1/LIM15 homolog O... [more]
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