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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045583 ID=TCONS_00045583|Name=TCONS_00045583|organism=Clytia hemisphaerica|type=transcript|length=2246bpRun BLAST on NCBI protein sequence of TCONS_00045583-protein >TCONS_00045583-protein ID=TCONS_00045583-protein|Name=TCONS_00045583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp MAKLLNTLTIHTKDVNCCAFSANSKTLASVSGDKTVRLWNADSATELSYSRun BLAST on NCBI transcript from alignment at scaffold_1:192042..202114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045583 ID=TCONS_00045583|Name=TCONS_00045583|organism=Clytia hemisphaerica|type=transcript|length=10073bp|location=Sequence derived from alignment at scaffold_1:192042..202114- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_1:192042..202114- >TCONS_00045583 ID=TCONS_00045583|Name=TCONS_00045583|organism=Clytia hemisphaerica|type=CDS|length=15150bp|location=Sequence derived from alignment at scaffold_1:192042..202114- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045583 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3) HSP 1 Score: 359.762 bits (922), Expect = 4.744e-115 Identity = 209/505 (41.39%), Postives = 290/505 (57.43%), Query Frame = 2
Query: 149 MAKLLNTLTIHTKDVNCCAFSANSKTLASVSGDKTVRLWNADSATELSYSPLNHHTYSVTCCAFSPFGSMLATGSQDYTLAIWNAEDGELIKTMLGHKGA-IRCCTFSSNSMLLATASSDETIGIWNLKNYSLSRVLKGPDSSLMTCRFTPDDLYLVSGSGYGDARIWDISTGQCEGMVEGHDSGTSGCGITGCDFSLKFGSADTAQSLSKVGESPRFLLATCGGDNLIKLWHVYTASAYSMKCNFEFVVSLKGHGGHVYDCKFSQDGKMLASCSSDKTVILWDPVKYEIIAKLTGHTRYITTVCFSPDGKYLASGSNDKSVQIWQID-----DIRRTESTGRQNPTHAIGNSPADQPKRKLIRNWSIDDVCDWLKELSLDQYCEVFRYNAIDGIELAQLTDHTLLNALQIGPLGHRNKITRELNELK-RIES-EGNIPDEFLCPITRELMADPVLVADGFTYERSSIASWFDSGNITSPMTNKPLPSNQLVPNRSLKNAIMRYF 1639
M KL++TL H DVNCCAFS + LA+ S DKT+RL++ TEL +SPL HTY+V CC FSP G +LA+ S D T +WN E+G+++ M G+ +R C FS +S LA+ ++D T+ +WN ++Y L R D SL C F+P+ + V+GS GD +WD +C + HD GIT CDFS + +D Q L F LA+CG D +K+W V + + + ++ +L GH V C FS DG+ML S S DK+VI++D I+ LT HTRY+TT F+P+ LA+GS DK+V IWQ D RRTE +Q +WS +DV WL L +F+ N IDG EL LT +L + L+I LG R+K+ R++ EL+ +++S IPDEF+CPITRELM DPV+ +DG++YE+ ++ +W TSPMTN LPS L PNR+LK AI R+
Sbjct: 1 MVKLIHTLADHGDDVNCCAFSFS--LLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWD-DKMRCPHSEKAHD-----LGITCCDFSSQ-PVSDGEQGLQ------FFRLASCGQDCQVKIWIV--SFTHILGFELKYKSTLSGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETLCQARRTEHQLKQ-----------------FTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471 The following BLAST results are available for this feature:
BLAST of TCONS_00045583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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