TCONS_00045583-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045583-protein
Unique NameTCONS_00045583-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045583-protein ID=TCONS_00045583-protein|Name=TCONS_00045583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MAKLLNTLTIHTKDVNCCAFSANSKTLASVSGDKTVRLWNADSATELSYS
PLNHHTYSVTCCAFSPFGSMLATGSQDYTLAIWNAEDGELIKTMLGHKGA
IRCCTFSSNSMLLATASSDETIGIWNLKNYSLSRVLKGPDSSLMTCRFTP
DDLYLVSGSGYGDARIWDISTGQCEGMVEGHDSGTSGCGITGCDFSLKFG
SADTAQSLSKVGESPRFLLATCGGDNLIKLWHVYTASAYSMKCNFEFVVS
LKGHGGHVYDCKFSQDGKMLASCSSDKTVILWDPVKYEIIAKLTGHTRYI
TTVCFSPDGKYLASGSNDKSVQIWQIDDIRRTESTGRQNPTHAIGNSPAD
QPKRKLIRNWSIDDVCDWLKELSLDQYCEVFRYNAIDGIELAQLTDHTLL
NALQIGPLGHRNKITRELNELKRIESEGNIPDEFLCPITRELMADPVLVA
DGFTYERSSIASWFDSGNITSPMTNKPLPSNQLVPNRSLKNAIMRYFGPV
PLIP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029144XLOC_029144Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045583TCONS_00045583Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR003613Ubox_domain
IPR001660SAM
IPR001680WD40_repeat
IPR013083Znf_RING/FYVE/PHD
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR013761SAM/pointed
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 312..326
score: 35.42
coord: 27..41
score: 38.63
coord: 113..127
score: 36.77
IPR003613U box domainSMARTSM00504Ubox_2coord: 433..496
e-value: 9.4E-30
score: 114.8
IPR003613U box domainPFAMPF04564U-boxcoord: 430..496
e-value: 1.0E-22
score: 80.0
IPR003613U box domainPROSITEPS51698U_BOXcoord: 429..503
score: 39.206
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 357..424
e-value: 3.2E-17
score: 73.2
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 358..422
e-value: 4.2E-15
score: 55.5
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 360..424
score: 17.136
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 286..325
e-value: 9.8E-12
score: 55.0
coord: 45..84
e-value: 6.6E-8
score: 42.3
coord: 171..232
e-value: 0.0094
score: 25.1
coord: 129..168
e-value: 1.6E-4
score: 31.0
coord: 1..40
e-value: 3.7E-10
score: 49.8
coord: 87..126
e-value: 7.5E-9
score: 45.4
coord: 244..283
e-value: 1.1E-10
score: 51.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 290..324
e-value: 4.8E-9
score: 36.6
coord: 3..40
e-value: 1.6E-7
score: 31.8
coord: 248..283
e-value: 3.1E-8
score: 34.0
coord: 53..84
e-value: 2.0E-6
score: 28.3
coord: 132..168
e-value: 0.03
score: 15.1
coord: 89..126
e-value: 9.0E-5
score: 23.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 251..283
score: 13.483
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 136..177
score: 11.043
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 8..49
score: 13.416
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 52..93
score: 14.986
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 293..334
score: 17.359
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 94..135
score: 13.783
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 431..498
e-value: 9.1E-12
score: 44.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..81
e-value: 4.8E-27
score: 93.8
NoneNo IPR availableGENE3D2.80.10.50coord: 117..229
e-value: 1.2E-21
score: 76.4
NoneNo IPR availableGENE3D1.10.10.670coord: 230..277
e-value: 9.5E-15
score: 53.8
coord: 278..358
e-value: 2.3E-21
score: 75.0
coord: 82..116
e-value: 2.7E-17
score: 62.0
NoneNo IPR availableGENE3D1.10.150.50coord: 359..430
e-value: 1.4E-20
score: 73.0
NoneNo IPR availableCDDcd00200WD40coord: 4..325
e-value: 5.43341E-78
score: 247.248
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 427..496
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 113..127
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 27..41
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 71..85
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 8..334
score: 58.345
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 355..426
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 6..328

Blast
[Close]
BLAST of TCONS_00045583-protein vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 359.762 bits (922), Expect = 1.114e-119
Identity = 209/505 (41.39%), Postives = 290/505 (57.43%), Query Frame = 0 
Query:    1 MAKLLNTLTIHTKDVNCCAFSANSKTLASVSGDKTVRLWNADSATELSYSPLNHHTYSVTCCAFSPFGSMLATGSQDYTLAIWNAEDGELIKTMLGHKGA-IRCCTFSSNSMLLATASSDETIGIWNLKNYSLSRVLKGPDSSLMTCRFTPDDLYLVSGSGYGDARIWDISTGQCEGMVEGHDSGTSGCGITGCDFSLKFGSADTAQSLSKVGESPRFLLATCGGDNLIKLWHVYTASAYSMKCNFEFVVSLKGHGGHVYDCKFSQDGKMLASCSSDKTVILWDPVKYEIIAKLTGHTRYITTVCFSPDGKYLASGSNDKSVQIWQID-----DIRRTESTGRQNPTHAIGNSPADQPKRKLIRNWSIDDVCDWLKELSLDQYCEVFRYNAIDGIELAQLTDHTLLNALQIGPLGHRNKITRELNELK-RIES-EGNIPDEFLCPITRELMADPVLVADGFTYERSSIASWFDSGNITSPMTNKPLPSNQLVPNRSLKNAIMRYF 497
            M KL++TL  H  DVNCCAFS +   LA+ S DKT+RL++    TEL +SPL  HTY+V CC FSP G +LA+ S D T  +WN E+G+++  M    G+ +R C FS +S  LA+ ++D T+ +WN ++Y L R     D SL  C F+P+  + V+GS  GD  +WD    +C    + HD      GIT CDFS +   +D  Q L        F LA+CG D  +K+W V  +  + +    ++  +L GH   V  C FS DG+ML S S DK+VI++D     I+  LT HTRY+TT  F+P+   LA+GS DK+V IWQ D       RRTE   +Q                    +WS +DV  WL    L     +F+ N IDG EL  LT  +L + L+I  LG R+K+ R++ EL+ +++S    IPDEF+CPITRELM DPV+ +DG++YE+ ++ +W      TSPMTN  LPS  L PNR+LK AI R+ 
Sbjct:    1 MVKLIHTLADHGDDVNCCAFSFS--LLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWD-DKMRCPHSEKAHD-----LGITCCDFSSQ-PVSDGEQGLQ------FFRLASCGQDCQVKIWIV--SFTHILGFELKYKSTLSGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETLCQARRTEHQLKQ-----------------FTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00045583-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU11.114e-11941.39WD repeat, SAM and U-box domain-containing protein... [more]
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