TCONS_00045312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045312
Unique NameTCONS_00045312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045312 ID=TCONS_00045312|Name=TCONS_00045312|organism=Clytia hemisphaerica|type=transcript|length=901bp
TTTTAAGTAAGGGCAAATCATTAGAGCAATCAACTAACTCAACAGAATGG
TTAGTTTCCTTGAGAACACCAGCAATAACAGCTTCATTCTCTATTGGATT
GAAAGAACATGTTGAATAAACAAGACGTCCACCAACCTTCAAAAGCTCCA
AGCCTCTAATGAGGATTCTCATTTGAAGACGGTGAAGGGCGTTTCCTAAA
TGAGGTGTCCATCTATGCCAAAGGAGCGGATTCTTTCTAATGGTTCCATC
ACCAGAGCAGGGCACATCACAAAGCACACGATCAAATTCAAGTTGGGTTT
TATTTCCACTTTCATCTGTTGTGTGAAGCTTTGGATAGATAGAAGCATCA
TGATTAGTGATGATGACGCAAGGTGTATTTAAACGTTTGGCTTGATGAGT
CAACATGTAGCATCGTTTGTGATCTGCATCATTCGCGAGAACAGCACCAG
TTGGAACAGAACCTTTCTCACAAGTGGAATGGAACATTTCAATGATTTGC
CCTGTTTTAGAACCAGGTGCGGCACACATATCCAAAACAAGATGATGTGA
TTTAACATCAAGAAGCATTGGTGGGATCATGCTAACAGCTTCTTGTCTTG
TTATTGCACCACATTCTGTATCATCAACAAGAAAACGATGAAGTTTTTGA
AGAGCCTCTGATCTTCTTATAAAGCGTCTGGAAAGATTACTATTCCATGC
AAATTCCTCAGGAAACCATGGGATAGGTTCAAGCAGCAGCTgttcatttt
cttcatcatcatcctcttttttttcttcaatctctGTTGGTGCAAGTTTG
GAGATGTATCCATCTTTCAGACTTTTCAGTAAATCTTTAGCATGTCCACG
ATTTTGTGTAATACGAAAGGTAGATGGTAGATCTTTTCTGCAAAACTGAA
G
Run BLAST on NCBI

protein sequence of TCONS_00045312-protein

>TCONS_00045312-protein ID=TCONS_00045312-protein|Name=TCONS_00045312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
LQFCRKDLPSTFRITQNRGHAKDLLKSLKDGYISKLAPTEIEEKKEDDDE
ENEQLLLEPIPWFPEEFAWNSNLSRRFIRRSEALQKLHRFLVDDTECGAI
TRQEAVSMIPPMLLDVKSHHLVLDMCAAPGSKTGQIIEMFHSTCEKGSVP
TGAVLANDADHKRCYMLTHQAKRLNTPCVIITNHDASIYPKLHTTDESGN
KTQLEFDRVLCDVPCSGDGTIRKNPLLWHRWTPHLGNALHRLQMRILIRG
LELLKVGGRLVYSTCSFNPIENEAVIAGVLKETNHSVELVDCSNDLPLLK
Run BLAST on NCBI

transcript from alignment at sc0007474:1..901

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045312 ID=TCONS_00045312|Name=TCONS_00045312|organism=Clytia hemisphaerica|type=transcript|length=901bp|location=Sequence derived from alignment at sc0007474:1..901 (Clytia hemisphaerica)
CTTCAGTTTTGCAGAAAAGATCTACCATCTACCTTTCGTATTACACAAAA
TCGTGGACATGCTAAAGATTTACTGAAAAGTCTGAAAGATGGATACATCT
CCAAACTTGCACCAACagagattgaagaaaaaaaagaggatgatgatgaa
gaaaatgaacAGCTGCTGCTTGAACCTATCCCATGGTTTCCTGAGGAATT
TGCATGGAATAGTAATCTTTCCAGACGCTTTATAAGAAGATCAGAGGCTC
TTCAAAAACTTCATCGTTTTCTTGTTGATGATACAGAATGTGGTGCAATA
ACAAGACAAGAAGCTGTTAGCATGATCCCACCAATGCTTCTTGATGTTAA
ATCACATCATCTTGTTTTGGATATGTGTGCCGCACCTGGTTCTAAAACAG
GGCAAATCATTGAAATGTTCCATTCCACTTGTGAGAAAGGTTCTGTTCCA
ACTGGTGCTGTTCTCGCGAATGATGCAGATCACAAACGATGCTACATGTT
GACTCATCAAGCCAAACGTTTAAATACACCTTGCGTCATCATCACTAATC
ATGATGCTTCTATCTATCCAAAGCTTCACACAACAGATGAAAGTGGAAAT
AAAACCCAACTTGAATTTGATCGTGTGCTTTGTGATGTGCCCTGCTCTGG
TGATGGAACCATTAGAAAGAATCCGCTCCTTTGGCATAGATGGACACCTC
ATTTAGGAAACGCCCTTCACCGTCTTCAAATGAGAATCCTCATTAGAGGC
TTGGAGCTTTTGAAGGTTGGTGGACGTCTTGTTTATTCAACATGTTCTTT
CAATCCAATAGAGAATGAAGCTGTTATTGCTGGTGTTCTCAAGGAAACTA
ACCATTCTGTTGAGTTAGTTGATTGCTCTAATGATTTGCCCTTACTTAAA
A

Coding sequence (CDS) from alignment at sc0007474:1..901

>TCONS_00045312 ID=TCONS_00045312|Name=TCONS_00045312|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0007474:1..901 (Clytia hemisphaerica)
CTTCAGTTTTGCAGAAAAGATCTACCATCTACCTTTCGTATTACACAAAA
TCGTGGACATGCTAAAGATTTACTGAAAAGTCTGAAAGATGGATACATCT
CCAAACTTGCACCAACagagattgaagaaaaaaaagaggatgatgatgaa
gaaaatgaacAGCTGCTGCTTGAACCTATCCCATGGTTTCCTGAGGAATT
TGCATGGAATAGTAATCTTTCCAGACGCTTTATAAGAAGATCAGAGGCTC
TTCAAAAACTTCATCGTTTTCTTGTTGATGATACAGAATGTGGTGCAATA
ACAAGACAAGAAGCTGTTAGCATGATCCCACCAATGCTTCTTGATGTTAA
ATCACATCATCTTGTTTTGGATATGTGTGCCGCACCTGGTTCTAAAACAG
GGCAAATCATTGAAATGTTCCATTCCACTTGTGAGAAAGGTTCTGTTCCA
ACTGGTGCTGTTCTCGCGAATGATGCAGATCACAAACGATGCTACATGTT
GACTCATCAAGCCAAACGTTTAAATACACCTTGCGTCATCATCACTAATC
ATGATGCTTCTATCTATCCAAAGCTTCACACAACAGATGAAAGTGGAAAT
AAAACCCAACTTGAATTTGATCGTGTGCTTTGTGATGTGCCCTGCTCTGG
TGATGGAACCATTAGAAAGAATCCGCTCCTTTGGCATAGATGGACACCTC
ATTTAGGAAACGCCCTTCACCGTCTTCAAATGAGAATCCTCATTAGAGGC
TTGGAGCTTTTGAAGGTTGGTGGACGTCTTGTTTATTCAACATGTTCTTT
CAATCCAATAGAGAATGAAGCTGTTATTGCTGGTGTTCTCAAGGAAACTA
ACCATTCTGTTGAGTTAGTTGATTGCTCTAATGATTTGCCCTTACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028893XLOC_028893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045312-exon-sc0007474-1491911889:1..901TCONS_00045312-exon-sc0007474-1491911889:1..901Clytia hemisphaericaexon
TCONS_00045312-exon-sc0007474-1510915933:1..901TCONS_00045312-exon-sc0007474-1510915933:1..901Clytia hemisphaericaexon
TCONS_00045312-exon-sc0007474-1575043694:1..901TCONS_00045312-exon-sc0007474-1575043694:1..901Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045312-proteinTCONS_00045312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007474supercontigsc0007474:1..901 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.6628	14.0485	8.76536	11.7559	111.105	87.3052	46.2055	52.4514	39.4875	48.0554	24.6723	21.0671	26.6639	24.9995	27.7145	26.8365	39.7186	27.1402	3.43347	8.49743	30.6338	32.3503	83.0021	74.6059	21.4674	28.8861	14.2707	10.2784	67.2036	85.051
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023267RCMT
IPR001678MeTrfase_RsmB/NOP2
IPR018314Fmu/NOL1/Nop2p_CS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00045312 vs. Swiss-Prot (Human)
Match: NSUN2 (tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 1.188e-101
Identity = 157/296 (53.04%), Postives = 211/296 (71.28%), Query Frame = -1 
Query:    2 RKDLPSTFRITQNRGHAKDLLKSLKDGYISKLAPTXXXXXXXXXXXXXXXXXXEPIPWFPEEFAWNSNLSRRFIRRSEALQKLHRFLVDDTECGAITRQEAVSMIPPMLLDVKSHHLVLDMCAAPGSKTGQIIEMFHSTCEKGSVPTGAVLANDADHKRCYMLTHQAKRLNTPCVIITNHDASIYPKLHTTDESGNKTQLEFDRVLCDVPCSGDGTIRKNPLLWHRWTPHLGNALHRLQMRILIRGLELLKVGGRLVYSTCSFNPIENEAVIAGVLKETNHSVELVDCSNDLPLLK 889
            R+ LP+T RIT  + HAK++L  LK+ Y  +L         + + +  +  + +P+ W+PEE AW++NLSR+ +R+S  L+K H+FLV +TE G I+RQEAVSMIPP+LL+V+ HH +LDMCAAPGSKT Q+IEM H+       P G V+AND D+KRCY+L HQAKRL++PC+++ NHDAS  P+L   D  G K  L +DR+LCDVPCSGDGT+RKN  +W +WT      LH LQ+RI  RG E L  GGR+VYSTCS NPIE+EAVIA +L+++  ++EL D SN+LP LK
Sbjct:   71 REPLPATLRITGYKSHAKEILHCLKNKYFKELE--------DLEVDGQKVEVPQPLSWYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNV-PFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQ-IDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLK 356
The following BLAST results are available for this feature:
BLAST of TCONS_00045312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSUN21.188e-10153.04tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo... [more]
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