TCONS_00045312-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045312-protein
Unique NameTCONS_00045312-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045312-protein ID=TCONS_00045312-protein|Name=TCONS_00045312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
LQFCRKDLPSTFRITQNRGHAKDLLKSLKDGYISKLAPTEIEEKKEDDDE
ENEQLLLEPIPWFPEEFAWNSNLSRRFIRRSEALQKLHRFLVDDTECGAI
TRQEAVSMIPPMLLDVKSHHLVLDMCAAPGSKTGQIIEMFHSTCEKGSVP
TGAVLANDADHKRCYMLTHQAKRLNTPCVIITNHDASIYPKLHTTDESGN
KTQLEFDRVLCDVPCSGDGTIRKNPLLWHRWTPHLGNALHRLQMRILIRG
LELLKVGGRLVYSTCSFNPIENEAVIAGVLKETNHSVELVDCSNDLPLLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028893XLOC_028893Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045312TCONS_00045312Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023267RCMT
IPR001678MeTrfase_RsmB/NOP2
IPR018314Fmu/NOL1/Nop2p_CS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023267RNA (C5-cytosine) methyltransferasePRINTSPR02008RCMTFAMILYcoord: 94..108
score: 28.79
coord: 257..273
score: 62.48
coord: 207..219
score: 65.49
coord: 123..133
score: 74.31
NoneNo IPR availableGENE3D3.40.50.150coord: 103..300
e-value: 6.5E-59
score: 198.4
IPR001678SAM-dependent methyltransferase RsmB/NOP2-typePFAMPF01189Methyltr_RsmB-Fcoord: 112..291
e-value: 9.1E-38
score: 129.8
IPR001678SAM-dependent methyltransferase RsmB/NOP2-typePROSITEPS51686SAM_MT_RSMB_NOPcoord: 1..300
score: 49.467
IPR018314Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved sitePROSITEPS01153NOL1_NOP2_SUNcoord: 206..217
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 58..298

Blast
[Close]
BLAST of TCONS_00045312-protein vs. Swiss-Prot (Human)
Match: NSUN2 (tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 2.097e-106
Identity = 159/296 (53.72%), Postives = 213/296 (71.96%), Query Frame = 0 
Query:    5 RKDLPSTFRITQNRGHAKDLLKSLKDGYISKLAPTEIEEKKEDDDEENEQLLLEPIPWFPEEFAWNSNLSRRFIRRSEALQKLHRFLVDDTECGAITRQEAVSMIPPMLLDVKSHHLVLDMCAAPGSKTGQIIEMFHSTCEKGSVPTGAVLANDADHKRCYMLTHQAKRLNTPCVIITNHDASIYPKLHTTDESGNKTQLEFDRVLCDVPCSGDGTIRKNPLLWHRWTPHLGNALHRLQMRILIRGLELLKVGGRLVYSTCSFNPIENEAVIAGVLKETNHSVELVDCSNDLPLLK 300
            R+ LP+T RIT  + HAK++L  LK+ Y  +L   E++ +K +        + +P+ W+PEE AW++NLSR+ +R+S  L+K H+FLV +TE G I+RQEAVSMIPP+LL+V+ HH +LDMCAAPGSKT Q+IEM H+       P G V+AND D+KRCY+L HQAKRL++PC+++ NHDAS  P+L   D  G K  L +DR+LCDVPCSGDGT+RKN  +W +WT      LH LQ+RI  RG E L  GGR+VYSTCS NPIE+EAVIA +L+++  ++EL D SN+LP LK
Sbjct:   71 REPLPATLRITGYKSHAKEILHCLKNKYFKELEDLEVDGQKVE--------VPQPLSWYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNV-PFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQ-IDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLK 356
The following BLAST results are available for this feature:
BLAST of TCONS_00045312-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSUN22.097e-10653.72tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo... [more]
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