TCONS_00045037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045037
Unique NameTCONS_00045037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045037 ID=TCONS_00045037|Name=TCONS_00045037|organism=Clytia hemisphaerica|type=transcript|length=1284bp
ATTGATGTCAAATCATTTTTATCTACTGTATTcaatgttaagaacattaa
cATTGACATAATAAATGTtatatattttacttttagGATAGAAAAATGAC
AGTTGAAATAGATAGGTTAACAGAGCCATTGCAACTGAAAGCTCAGGATC
TCAATCCTGATAGAGATTTTGGTGACAAGATTGGTAATAATGAAAATGTT
TCACCTTCTCTTTGTGAAAATGAACTTTTGGTAGCAGTGAGACCTTCTAA
TTTGATACAAACACAACTTCTAAATGTAAATGCACCTATATGTAAGAAAA
TTATTGAGAACAATGTATTGGCAATCAGAAATTTGGTTTCACCACCAAAG
AGACCCATTGAGAATAATTTGAGTACAAGTGAGGAACCTCAAGCAAAAAG
AACTTCTTTAACACCAAATTTGTGTGCTCCTATAGTGTCTCAGTCTCAAT
CTTTACCAAATTCACCTAACCGCTTATTGAGTCAATCAGCTGGAAATAGT
AGTGAACTTCAATCTGCTATAAAACGAGTTCAAAATAATTTGAGCCAGAG
TTGTTTTGCTGATTTACGTCCAAAAAAACATGAAGACATAGATAGTGATT
TGACTTGCTTGAACTGGTTACAGGAAGGAAATTTATTAAACGGTTTCACT
CCAAAGAAAGATGAGAAAGGTGAAAATAGCAGCGAAGAGGAAAACAGTGT
TGAAACGGTTGATGCTTCTGATTTGTCTTTACTGGTTAATGATCCGCTGA
ACTCTATCAATGAGGTGGATAAATCATTGAGGAAACCAGCTTACTCCTTT
TCTACCCTTATTTTCATGGCTATTGAAAATGCAAAAGATAAACGCCTACC
TGTAAAGGAAATTTACCAATGGATTCAAGAcaattttccttattttcaaa
aagcaccAATTGGATGGAAGAACTCTGTGCGTCATAACCTGTCATTGAAC
AAGTCATTCAAGAAAGTCGATAAAGAAAAGTGTATTGGGAAAGGTTCACT
TTGGACAATTGACCATGAAGCTCGAGCTGGCCTCGTTCAACAACTTAGAA
AAACAGCAACATATCACTCTTATCCATATTCCAGACTTCCATTTACACAC
AGGTTGAAATAATGATATTATATGTATTTTTGTGCTGTTACCAATTTTTT
TCAGCCTCCCTTGTAAAGCTCACTGTTACAATTCATTACCCAGATAATAG
AAGAAGAACTATGACCTCTGATTTTATTTGTTCTCAATATTTATAAAAAC
CATCACGCATACTGATAgtttaaaaacaatattt
Run BLAST on NCBI

protein sequence of TCONS_00045037-protein

>TCONS_00045037-protein ID=TCONS_00045037-protein|Name=TCONS_00045037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MTVEIDRLTEPLQLKAQDLNPDRDFGDKIGNNENVSPSLCENELLVAVRP
SNLIQTQLLNVNAPICKKIIENNVLAIRNLVSPPKRPIENNLSTSEEPQA
KRTSLTPNLCAPIVSQSQSLPNSPNRLLSQSAGNSSELQSAIKRVQNNLS
QSCFADLRPKKHEDIDSDLTCLNWLQEGNLLNGFTPKKDEKGENSSEEEN
SVETVDASDLSLLVNDPLNSINEVDKSLRKPAYSFSTLIFMAIENAKDKR
LPVKEIYQWIQDNFPYFQKAPIGWKNSVRHNLSLNKSFKKVDKEKCIGKG
SLWTIDHEARAGLVQQLRKTATYHSYPYSRLPFTHRLK
Run BLAST on NCBI

transcript from alignment at sc0006737:4..1458-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045037 ID=TCONS_00045037|Name=TCONS_00045037|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0006737:4..1458- (Clytia hemisphaerica)
ATTGATGTCAAATCATTTTTATCTACTGTATTCAATGTTAAGAACATTAA
CATTGACATAATAAATGTTATATATTTTACTTTTAGGATAGAAAAATGAC
AGTTGAAATAGATAGGTTAACAGAGCCATTGCAACTGAAAGCTCAGGATC
TCAATCCTGATAGAGATTTTGGTGACAAGATTGGTAATAATGAAAATGTT
TCACCTTCTCTTTGTGAAAATGAACTTTTGGTAGCAGTGAGACCTTCTAA
TTTGATACAAACACAACTTCTAAATGTAAATGCACCTATATGTAAGAAAA
TTATTGAGAACAATGTATTGGCAATCAGAAATTTGGTTTCACCACCAAAG
AGACCCATTGAGAATAATTTGAGTACAAGTGAGGAACCTCAAGCAAAAAG
AACTTCTTTAACACCAAATTTGTGTGCTCCTATAGTGTCTCAGTCTCAAT
CTTTACCAAATTCACCTAACCGCTTATTGAGTCAATCAGCTGGAAATAGT
AGTGAACTTCAATCTGCTATAAAACGAGTTCAAAATAATTTGAGCCAGAG
TTGTTTTGCTGATTTACGTCCAAAAAAACATGAAGACATAGATAGTGATT
TGACTTGCTTGAACTGGTTACAGGAAGGAAATTTATTAAACGGTTTCACT
CCAAAGAAAGATGAGAAAGGTGAAAATAGCAGCGAAGAGGAAAACAGTGT
TGAAACGGTTGATGCTTCTGATTTGTCTTTACTGGTTAATGATCCGCTGA
ACTCTATCAATGAGGTGGATAAATCATTGAGGAAACCAGCTTACTCCTTT
TCTACCCTTATTTTCATGGCTATTGAAAATGCAAAAGATAAACGCCTACC
TGTAAAGGAAATTTACCAATGGATTCAAGACAATTTTCCTTATTTTCAAA
AAGCACCAATTGGATGGAAGAACTCTGTGCGTCATAACCTGTCATTGAAC
AAGTCATTCAAGAAAGTCGATAAAGAAAAGGTATGTTTTCTACACTATCT
TTAGATAGTACTCAGCTTAGTTTTCTTTCAAAGGCAAATGGGTTTTCTCC
CAAAGTCTGTACTCATTGAATTGCAATTGTTTCAAAGATTTTATATATTT
TTAAATTTAATTATCTAAAATAAATAACTCATGATGAAAACTATATTTCA
GTGTATTGGGAAAGGTTCACTTTGGACAATTGACCATGAAGCTCGAGCTG
GCCTCGTTCAACAACTTAGAAAAACAGCAACATATCACTCTTATCCATAT
TCCAGACTTCCATTTACACACAGGTTGAAATAATGATATTATATGTATTT
TTGTGCTGTTACCAATTTTTTTCAGCCTCCCTTGTAAAGCTCACTGTTAC
AATTCATTACCCAGATAATAGAAGAAGAACTATGACCTCTGATTTTATTT
GTTCTCAATATTTATAAAAACCATCACGCATACTGATAGTTTAAAAACAA
TATTT

Coding sequence (CDS) from alignment at sc0006737:4..1458-

>TCONS_00045037 ID=TCONS_00045037|Name=TCONS_00045037|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0006737:4..1458- (Clytia hemisphaerica)
TGTATTGGGAAAGGTTCACTTTGGACAATTGACCATGAAGCTCGAGCTGG
CCTCGTTCAACAACTTAGAAAAACAGCAACATATCACTCTTATCCATATT
CCAGACTTCCATTTACACACAGGTTGAAATAAATGACAGTTGAAATAGAT
AGGTTAACAGAGCCATTGCAACTGAAAGCTCAGGATCTCAATCCTGATAG
AGATTTTGGTGACAAGATTGGTAATAATGAAAATGTTTCACCTTCTCTTT
GTGAAAATGAACTTTTGGTAGCAGTGAGACCTTCTAATTTGATACAAACA
CAACTTCTAAATGTAAATGCACCTATATGTAAGAAAATTATTGAGAACAA
TGTATTGGCAATCAGAAATTTGGTTTCACCACCAAAGAGACCCATTGAGA
ATAATTTGAGTACAAGTGAGGAACCTCAAGCAAAAAGAACTTCTTTAACA
CCAAATTTGTGTGCTCCTATAGTGTCTCAGTCTCAATCTTTACCAAATTC
ACCTAACCGCTTATTGAGTCAATCAGCTGGAAATAGTAGTGAACTTCAAT
CTGCTATAAAACGAGTTCAAAATAATTTGAGCCAGAGTTGTTTTGCTGAT
TTACGTCCAAAAAAACATGAAGACATAGATAGTGATTTGACTTGCTTGAA
CTGGTTACAGGAAGGAAATTTATTAAACGGTTTCACTCCAAAGAAAGATG
AGAAAGGTGAAAATAGCAGCGAAGAGGAAAACAGTGTTGAAACGGTTGAT
GCTTCTGATTTGTCTTTACTGGTTAATGATCCGCTGAACTCTATCAATGA
GGTGGATAAATCATTGAGGAAACCAGCTTACTCCTTTTCTACCCTTATTT
TCATGGCTATTGAAAATGCAAAAGATAAACGCCTACCTGTAAAGGAAATT
TACCAATGGATTCAAGACAATTTTCCTTATTTTCAAAAAGCACCAATTGG
ATGGAAGAACTCTGTGCGTCATAACCTGTCATTGAACAAGTCATTCAAGA
AAGTCGATAAAGAAAAGTGTATTGGGAAAGGTTCACTTTGGACAATTGAC
CATGAAGCTCGAGCTGGCCTCGTTCAACAACTTAGAAAAACAGCAACATA
TCACTCTTATCCATATTCCAGACTTCCATTTACACACAGGTTGAAATAAA
TGACAGTTGAAATAGATAGGTTAACAGAGCCATTGCAACTGAAAGCTCAG
GATCTCAATCCTGATAGAGATTTTGGTGACAAGATTGGTAATAATGAAAA
TGTTTCACCTTCTCTTTGTGAAAATGAACTTTTGGTAGCAGTGAGACCTT
CTAATTTGATACAAACACAACTTCTAAATGTAAATGCACCTATATGTAAG
AAAATTATTGAGAACAATGTATTGGCAATCAGAAATTTGGTTTCACCACC
AAAGAGACCCATTGAGAATAATTTGAGTACAAGTGAGGAACCTCAAGCAA
AAAGAACTTCTTTAACACCAAATTTGTGTGCTCCTATAGTGTCTCAGTCT
CAATCTTTACCAAATTCACCTAACCGCTTATTGAGTCAATCAGCTGGAAA
TAGTAGTGAACTTCAATCTGCTATAAAACGAGTTCAAAATAATTTGAGCC
AGAGTTGTTTTGCTGATTTACGTCCAAAAAAACATGAAGACATAGATAGT
GATTTGACTTGCTTGAACTGGTTACAGGAAGGAAATTTATTAAACGGTTT
CACTCCAAAGAAAGATGAGAAAGGTGAAAATAGCAGCGAAGAGGAAAACA
GTGTTGAAACGGTTGATGCTTCTGATTTGTCTTTACTGGTTAATGATCCG
CTGAACTCTATCAATGAGGTGGATAAATCATTGAGGAAACCAGCTTACTC
CTTTTCTACCCTTATTTTCATGGCTATTGAAAATGCAAAAGATAAACGCC
TACCTGTAAAGGAAATTTACCAATGGATTCAAGACAATTTTCCTTATTTT
CAAAAAGCACCAATTGGATGGAAGAACTCTGTGCGTCATAACCTGTCATT
GAACAAGTCATTCAAGAAAGTCGATAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028622XLOC_028622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045037-proteinTCONS_00045037-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045037-exon-sc0006737-1575043694:479..1458TCONS_00045037-exon-sc0006737-1575043694:479..1458Clytia hemisphaericaexon
TCONS_00045037-exon-sc0006737-1575043694:4..307TCONS_00045037-exon-sc0006737-1575043694:4..307Clytia hemisphaericaexon
TCONS_00045037-exon-sc0006737-1510915933:479..1458TCONS_00045037-exon-sc0006737-1510915933:479..1458Clytia hemisphaericaexon
TCONS_00045037-exon-sc0006737-1510915933:4..307TCONS_00045037-exon-sc0006737-1510915933:4..307Clytia hemisphaericaexon
TCONS_00045037-exon-sc0006737-1491911889:479..1458TCONS_00045037-exon-sc0006737-1491911889:479..1458Clytia hemisphaericaexon
TCONS_00045037-exon-sc0006737-1491911889:4..307TCONS_00045037-exon-sc0006737-1491911889:4..307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006737supercontigsc0006737:4..1458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.8216	7.4342	1.98046	0.584927	91.2814	67.1026	38.6537	43.0988	24.4455	29.143	29.8918	20.6388	24.3633	18.053	18.6462	19.6885	21.3312	20.7719	19.4708	24.0826	27.7925	27.4548	27.8881	30.6179	19.2758	26.0577	43.986	39.9402	28.9013	29.2592
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00045037 vs. Swiss-Prot (Human)
Match: FOXN3 (Forkhead box protein N3 OS=Homo sapiens GN=FOXN3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.793e-38
Identity = 90/179 (50.28%), Postives = 109/179 (60.89%), Query Frame = 3 
Query:  561 DLRPKKHEDIDSDLTCLNWLQEG-NLLNGFTPKKDEKGXXXXXXXXXXXTVDASDLSLLVNDPLNSINEVDKSLR---KPAYSFSTLIFMAIENAKDKRLPVKEIYQWIQDNFPYFQKAPIGWKNSVRHNLSLNKSFKKVDKEK--CIGKGSLWTIDHEARAGLVQQLRKTATYHSYPY 1079
            D+R ++    D +LT LNWL E  NLL  F       GE+     + V+ +D          P +S    D       KP YSFS LIFMAIE++  KRLPVK+IY WI ++FPYF  AP GWKNSVRHNLSLNK FKKVDKE+   IGKGSLW ID E R  L+Q L+KT  YH +P+
Sbjct:   47 DIRLEEGAMEDEELTNLNWLHESKNLLKSF-------GESVLRSVSPVQDLDDD----TPPSPAHSDMPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTP-YHPHPH 213
The following BLAST results are available for this feature:
BLAST of TCONS_00045037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXN31.793e-3850.28Forkhead box protein N3 OS=Homo sapiens GN=FOXN3 P... [more]
back to top