TCONS_00045037-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045037-protein
Unique NameTCONS_00045037-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045037-protein ID=TCONS_00045037-protein|Name=TCONS_00045037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MTVEIDRLTEPLQLKAQDLNPDRDFGDKIGNNENVSPSLCENELLVAVRP
SNLIQTQLLNVNAPICKKIIENNVLAIRNLVSPPKRPIENNLSTSEEPQA
KRTSLTPNLCAPIVSQSQSLPNSPNRLLSQSAGNSSELQSAIKRVQNNLS
QSCFADLRPKKHEDIDSDLTCLNWLQEGNLLNGFTPKKDEKGENSSEEEN
SVETVDASDLSLLVNDPLNSINEVDKSLRKPAYSFSTLIFMAIENAKDKR
LPVKEIYQWIQDNFPYFQKAPIGWKNSVRHNLSLNKSFKKVDKEKCIGKG
SLWTIDHEARAGLVQQLRKTATYHSYPYSRLPFTHRLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028622XLOC_028622Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045037TCONS_00045037Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 230..243
score: 57.65
coord: 251..268
score: 45.46
coord: 274..291
score: 68.21
IPR001766Fork head domainSMARTSM00339forkneu4coord: 228..318
e-value: 1.7E-41
score: 153.8
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 230..311
e-value: 2.0E-32
score: 111.2
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 230..319
score: 28.812
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 214..316
e-value: 2.5E-36
score: 123.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 229..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..105
NoneNo IPR availableCDDcd00059FHcoord: 230..306
e-value: 2.04081E-41
score: 139.997
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 274..280

Blast
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BLAST of TCONS_00045037-protein vs. Swiss-Prot (Human)
Match: FOXN3 (Forkhead box protein N3 OS=Homo sapiens GN=FOXN3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.721e-41
Identity = 90/179 (50.28%), Postives = 109/179 (60.89%), Query Frame = 0 
Query:  156 DLRPKKHEDIDSDLTCLNWLQEG-NLLNGFTPKKDEKGENSSEEENSVETVDASDLSLLVNDPLNSINEVDKSLR---KPAYSFSTLIFMAIENAKDKRLPVKEIYQWIQDNFPYFQKAPIGWKNSVRHNLSLNKSFKKVDKEK--CIGKGSLWTIDHEARAGLVQQLRKTATYHSYPY 328
            D+R ++    D +LT LNWL E  NLL  F       GE+     + V+ +D          P +S    D       KP YSFS LIFMAIE++  KRLPVK+IY WI ++FPYF  AP GWKNSVRHNLSLNK FKKVDKE+   IGKGSLW ID E R  L+Q L+KT  YH +P+
Sbjct:   47 DIRLEEGAMEDEELTNLNWLHESKNLLKSF-------GESVLRSVSPVQDLDDD----TPPSPAHSDMPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTP-YHPHPH 213
The following BLAST results are available for this feature:
BLAST of TCONS_00045037-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXN31.721e-4150.28Forkhead box protein N3 OS=Homo sapiens GN=FOXN3 P... [more]
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