TCONS_00044907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044907
Unique NameTCONS_00044907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044907 ID=TCONS_00044907|Name=TCONS_00044907|organism=Clytia hemisphaerica|type=transcript|length=452bp
AGTGGCAGCTTACTACAATCCAttaccgacgctacgatatccGACATCGG
TATAAATTCCGCCGGATCCGTCATTTACCTAGCGTACGGGAATTCCGTTA
AAATGATTGACATGAAAACGTACTCGACGCTGGGCAAACTAACGGGACAC
ACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGGGACACAATCATGA
TAACGTCATCACAGGGTCCAAAGATCATTACATAAAGaTTTATGAAGTGG
TCGATGAAGTTGCATCGAGTCAGatGCCACGGACGAACCTGGAACCTCCG
CATTACGACGGCGTCGAATCGCTTGCCATGAAAGGTGACGTCATCTTTAG
CGGGTCACGCGATAATACGATCAAGAAATGGAATTACGCCAACCACGCCC
TTGAAAATCATATGACGTCAGCACACAAAGACTGGGTGACAACTCTAAAT
TT
Run BLAST on NCBI

protein sequence of TCONS_00044907-protein

>TCONS_00044907-protein ID=TCONS_00044907-protein|Name=TCONS_00044907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SGSLLQSITDATISDIGINSAGSVIYLAYGNSVKMIDMKTYSTLGKLTGH
TGAVTCLLVANTGHNHDNVITGSKDHYIKIYEVVDEVASSQMPRTNLEPP
HYDGVESLAMKGDVIFSGSRDNTIKKWNYANHALENHMTSAHKDWVTTLN
Run BLAST on NCBI

transcript from alignment at sc0006437:1..1829-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044907 ID=TCONS_00044907|Name=TCONS_00044907|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0006437:1..1829- (Clytia hemisphaerica)
AGTGGCAGCTTACTACAATCCATTACCGACGCTACGATATCCGACATCGG
TATAAATTCCGCCGGATCCGTCATTTACCTAGCGTACGGGAATTCCGTTA
AAATGATTGACATGAAAACGTACTCGACGCTGGGCAAACTAACGGGACAC
ACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGGGACACAATCATGA
TAACGTCATCACAGGGTCCAAAGATCATTACATAAAGGTGAAATGGTTTT
CATACTCTTAAATTTCCTGATGAACGGGGGTCCTTTTTACCAGGATTTGG
AAATTATGCGTCTAAATACTCTCCTGAAAAATTGTAAAGTACTCCTATTT
ACTAGGGTTTGAATTTCTACGTTGTGTTTAGCTGAGAGTTGTGAAATTGA
GTTCCTTTTTCTTTTCATAGATTTATGAAGTGGTCGATGAAGTTGCATCG
AGTCAGGTAAAACAATACTCCCTCATTATTGCAACTTCTAGGTACCCAAA
AATATTCATATTCGCTATCCAGCTGGCACATAACGCTTGTTTATTGTCCA
TGACGTCCATATAACGTTAGATGAACGCTGAAACAACGTAGAGACGTACA
CGCTTTTTCTGTATAAGAATAGTGTACTTTGGATGAGGGTCAAGTATTCT
TAAGAAAGTGCCAAAATTGTGGGTGAAATATTTTTAACATATTCTTAGTC
TTTTAGACTTGACTTTTTTACAAACATGAGAAATGATGAGTTTGGATTTG
TCAGCATGGGACCGCTTTACCTAATAATGTTATATTCTTCCCTGAATAGC
TTTGATGATGGAGATTTTTGTTTATTTTCAGATGCCACGGACGAACCTGG
AACCTCCGCATTACGACGGCGTCGAATCGCTTGCCATGAAAGGTGACGTC
ATCTTTAGCGGGTCACGCGATAATACGATCAAGAAATGGAATTACGCCAA
CCACGCCCTTGAAAATGTAAGTTATGTGATGGGAAAGGGTTTTGTTTCTT
TCAAATTTTACCGCTTTCTATGTCATGTTTAAAAAAAATATTTTGACATT
AACATAGATTATTAGTCTGTACACAGACCCGATATCTACGATTATTTTTT
TCAAAATTCATTGCCGTAGAGGGTCTGTTGTCATTGTTTTTTTCTGATTT
GAGATTTTTCAAACCGACTGCTGTGATAGAGTACGGTTGTAAGAGGAGAT
ACGATGAGAGAACTGTTGCTATTTATAAATCATACTTCATCGCAGAGGTG
TCCGTACGGAAAATTTTTAATCAAACAAAGAATGCGCACAGAGTGTACTA
CGAAAGGGGCCGTCCACATAGTACATACGCACTAAGGGGAGGGGAGTCTT
CTCAAAAGCGTATGCTTGCGTACGGGGGGAGGGGAGGGGTCAAAGGAAAA
TGTACGTACGCAGAGAAAAATTTTTCATAGCCCTTTTTTGCTTGTATTTG
TCGATTTTACGCTTCTTATACGCATCAAGGAAAAGAAAAAGTTTCTTGAT
AAAGTTTTATGTATGAAATAAAGGTCCGAACCAAACGATTTGAATTCGAA
ATTTTCTTCAAACGAGGGGGGTGTGGATGAAAAGTACGTACTTATTAGGG
GGGGGTATAGCCATTTGTGTACGCTTGCGTACAGGGGGGAGGGGGTATCC
GATTTTCGACATTTTAGTGCGTACGTACTATGTGGACGGCCCCAAACGAT
AAACGTGAGATACACTCTGGTACAGATTAATAGAATACAAAACATGAGAA
GAGGAACCCCTATAAAATTATTTTTGTTTACTCAGCATATGACGTCAGCA
CACAAAGACTGGGTGACAACTCTAAATTT

Coding sequence (CDS) from alignment at sc0006437:1..1829-

>TCONS_00044907 ID=TCONS_00044907|Name=TCONS_00044907|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0006437:1..1829- (Clytia hemisphaerica)
CATATGACGTCAGCACACAAAGACTGGGTGACAACTCTAAATATGCCACG
GACGAACCTGGAACCTCCGCATTACGACGGCGTCGAATCGCTTGCCATGA
AAGGTGACGTCATCTTTAGCGGGTCACGCGATAATACGATCAAGAAATGG
AATTACGCCAACCACGCCCTTGAAAATATTTATGAAGTGGTCGATGAAGT
TGCATCGAGTCAGAGTGGCAGCTTACTACAATCCATTACCGACGCTACGA
TATCCGACATCGGTATAAATTCCGCCGGATCCGTCATTTACCTAGCGTAC
GGGAATTCCGTTAAAATGATTGACATGAAAACGTACTCGACGCTGGGCAA
ACTAACGGGACACACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGG
GACACAATCATGATAACGTCATCACAGGGTCCAAAGATCATTACATAAAG
CATATGACGTCAGCACACAAAGACTGGGTGACAACTCTAAATATGCCACG
GACGAACCTGGAACCTCCGCATTACGACGGCGTCGAATCGCTTGCCATGA
AAGGTGACGTCATCTTTAGCGGGTCACGCGATAATACGATCAAGAAATGG
AATTACGCCAACCACGCCCTTGAAAATATTTATGAAGTGGTCGATGAAGT
TGCATCGAGTCAGAGTGGCAGCTTACTACAATCCATTACCGACGCTACGA
TATCCGACATCGGTATAAATTCCGCCGGATCCGTCATTTACCTAGCGTAC
GGGAATTCCGTTAAAATGATTGACATGAAAACGTACTCGACGCTGGGCAA
ACTAACGGGACACACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGG
GACACAATCATGATAACGTCATCACAGGGTCCAAAGATCATTACATAAAG
CATATGACGTCAGCACACAAAGACTGGGTGACAACTCTAAATATGCCACG
GACGAACCTGGAACCTCCGCATTACGACGGCGTCGAATCGCTTGCCATGA
AAGGTGACGTCATCTTTAGCGGGTCACGCGATAATACGATCAAGAAATGG
AATTACGCCAACCACGCCCTTGAAAATATTTATGAAGTGGTCGATGAAGT
TGCATCGAGTCAGAGTGGCAGCTTACTACAATCCATTACCGACGCTACGA
TATCCGACATCGGTATAAATTCCGCCGGATCCGTCATTTACCTAGCGTAC
GGGAATTCCGTTAAAATGATTGACATGAAAACGTACTCGACGCTGGGCAA
ACTAACGGGACACACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGG
GACACAATCATGATAACGTCATCACAGGGTCCAAAGATCATTACATAAAG
CATATGACGTCAGCACACAAAGACTGGGTGACAACTCTAAATATGCCACG
GACGAACCTGGAACCTCCGCATTACGACGGCGTCGAATCGCTTGCCATGA
AAGGTGACGTCATCTTTAGCGGGTCACGCGATAATACGATCAAGAAATGG
AATTACGCCAACCACGCCCTTGAAAATATTTATGAAGTGGTCGATGAAGT
TGCATCGAGTCAGAGTGGCAGCTTACTACAATCCATTACCGACGCTACGA
TATCCGACATCGGTATAAATTCCGCCGGATCCGTCATTTACCTAGCGTAC
GGGAATTCCGTTAAAATGATTGACATGAAAACGTACTCGACGCTGGGCAA
ACTAACGGGACACACGGGTGCTGTGACGTGTTTGCTGGTCGCCAATACGG
GACACAATCATGATAACGTCATCACAGGGTCCAAAGATCATTACATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028505XLOC_028505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044907-exon-sc0006437-1575043694:1593..1829TCONS_00044907-exon-sc0006437-1575043694:1593..1829Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1575043694:1374..1409TCONS_00044907-exon-sc0006437-1575043694:1374..1409Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1575043694:864..998TCONS_00044907-exon-sc0006437-1575043694:864..998Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1575043694:1..44TCONS_00044907-exon-sc0006437-1575043694:1..44Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1510915933:1593..1829TCONS_00044907-exon-sc0006437-1510915933:1593..1829Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1510915933:1374..1409TCONS_00044907-exon-sc0006437-1510915933:1374..1409Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1510915933:864..998TCONS_00044907-exon-sc0006437-1510915933:864..998Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1510915933:1..44TCONS_00044907-exon-sc0006437-1510915933:1..44Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1491911889:1593..1829TCONS_00044907-exon-sc0006437-1491911889:1593..1829Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1491911889:1374..1409TCONS_00044907-exon-sc0006437-1491911889:1374..1409Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1491911889:864..998TCONS_00044907-exon-sc0006437-1491911889:864..998Clytia hemisphaericaexon
TCONS_00044907-exon-sc0006437-1491911889:1..44TCONS_00044907-exon-sc0006437-1491911889:1..44Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044907-proteinTCONS_00044907-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006437supercontigsc0006437:1..1829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1629	15.9966	8.96581	9.96848	31.1712	27.1828	16.3901	15.912	10.8616	16.0642	11.8648	12.6466	20.074	21.1691	13.5796	15.3995	27.4415	19.9636	26.0038	27.9791	13.4064	17.4128	19.443	20.9195	31.2358	30.7086	13.6315	9.33333	19.8323	20.8672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00044907 vs. Swiss-Prot (Human)
Match: KI21B (Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.558e-43
Identity = 66/137 (48.18%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:   37 ISDIGINSAGSVIYLAYGNSVKMIDMKTYSTLGKLTGHTGAVTCLLVANTGHNHDNVITGSKDHYIKIYEVVDEVASSQMPRTNLEPPHYDGVESLAMKGDVIFSGSRDNTIKKWNYANHALENHMTSAHKDWVTTL 447
            I+ I ++ +G+++Y A GN+V++ ++  +  +GKLTGH G V CL V  T   HD V+TGSKDHY+K++E+ + V  +  P  N EPPHYDG+E LA++GD++FSGSRDN IKKW+     L   + +AHKDWV  L
Sbjct: 1415 INQIALSPSGTMLYAASGNAVRIWELSRFQPVGKLTGHIGPVMCLTVTQTASQHDLVVTGSKDHYVKMFELGECVTGTIGPTHNFEPPHYDGIECLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCAL 1551
The following BLAST results are available for this feature:
BLAST of TCONS_00044907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KI21B4.558e-4348.18Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF... [more]
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