TCONS_00044326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044326
Unique NameTCONS_00044326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044326 ID=TCONS_00044326|Name=TCONS_00044326|organism=Clytia hemisphaerica|type=transcript|length=628bp
CTTTTAGTTAAagataaaaacatgaaactagAGATTTTAATACTGTTTTC
AATTGCTTGGTTACACATACAAGCCAAAAATCCATGCATTGTAAACAGTG
ATTGTGGCTCCTGCTTGCGGGCTAATGGTGACTGTGCATTTTGTAAAGAT
CCAGACTATACTGAAGGAGATAACTATGCACGACCAAGATGCAACTACAA
GAATGTATTAGAAGGATTTGATTGTAAAGATATTATGGACATCCAAGGCA
AAATTACAGAAGTCAAGAAAGATCCCTTTCAACCAACTGTCCAAATTTCA
CCCCAAAAAGTTTCAGTCAAATTAAGACCAGCCCAAACTAAAGAAATTAA
ACTTTCAGTCAAACCAGCCGTGGATTTCCCTGTTGATTTGTATTACCTTA
TGGACATGTCAAAATCCATGGAAGatgatttagaaaaattgcGATCTTTG
GGTACACAAATTGGTAAGTACTAGTTCATCACTTCACCATACTGTTACTT
TATTTATTGCTAGCATTCTTATCTTGGTTAGGTTAATGTAGTCTTCAGGA
ACTCACCCATCTGAAAATCAAATTGTTTCTTTATTACCATTGATGCtggt
caaaaatagtgtgacatttttatttctc
Run BLAST on NCBI

protein sequence of TCONS_00044326-protein

>TCONS_00044326-protein ID=TCONS_00044326-protein|Name=TCONS_00044326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
LLVKDKNMKLEILILFSIAWLHIQAKNPCIVNSDCGSCLRANGDCAFCKD
PDYTEGDNYARPRCNYKNVLEGFDCKDIMDIQGKITEVKKDPFQPTVQIS
PQKVSVKLRPAQTKEIKLSVKPAVDFPVDLYYLMDMSKSMEDDLEKLRSL
GTQIGKY
Run BLAST on NCBI

transcript from alignment at sc0005377:3138..4542-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044326 ID=TCONS_00044326|Name=TCONS_00044326|organism=Clytia hemisphaerica|type=transcript|length=1405bp|location=Sequence derived from alignment at sc0005377:3138..4542- (Clytia hemisphaerica)
CTTTTAGTTAAAGATAAAAACATGAAACTAGAGATTTTAATACTGTTTTC
AATTGCTTGGTTACACATACAAGGTATATTGTTTTCTTTTTACCATTCCC
TCTTTGAAAATTGTTTTGTGTTTTTTGCCATCACTAATTTTTGCCAAAAA
TTCCCTTTTATTTATTATATGCTTTTTATCAATATTATAGCCAAAAATCC
ATGCATTGTAAACAGTGATTGTGGCTCCTGCTTGCGGGCTAATGGTGACT
GTGCATTTTGTAAAGATCCAGTAAGTGCCAAATTTTTATGACAAAAAAAG
TTTATTGATTGCCAACTTTTGCTAACCCTTTTACACAAATAACACCCATA
AAGACAAAGTTTGATTTAGCAAATTGATTGAGACCACTTTTAAATTTTAG
AAAATTTGCTGCTCGGAAACAAAAATATCAGGTTTCTTGTTATTTTACAG
CTTGGTCTATCATAATTGAACTTTCTTTAAATATTTTGATTTATTTACAC
TAGGACTATACTGAAGGAGATAACTATGCACGACCAAGATGCAACTACAA
GAATGTATTAGAAGGATTTGATTGTAAAGATATTATGGACATCCAAGGCA
AAATTACAGTAAGTAATGATAATAAAGCTTGGCCTGCTCCAAGAATACTT
TTGGTAACTTAAGAATGGCTTCCATCAATGGCCACTTAGCAGAACAATAA
AAGATGAAAGATGGATAACAGTGAAAAACTCGAGATAAGAACNGGTAACT
TAAGAATGGCTTCCATCAATGGCCACTTAGCAGAACAATAAAAGATGAAA
GATGGATAACAGTGAAAAACTCGAGATAAGAACTATATATACTTCTAAAA
TGAAACTGAAGTTTTATTTGGAGGTCTTTATTAAAGATTATCATGAGAAT
CACTTTTGTTTACTTTACAGGAAGTCAAGAAAGATCCCTTTCAACCAACT
GTCCAAATTTCACCCCAAAAAGTTTCAGTCAAATTAAGACCAGGTATGTC
TGTCTCTTTTTCTGTTTGTCAGTTTTCTATATAATGTAACAATCTTCCGT
TAAATACATTAAAATTTAAGAAAACACAAACTCAATTCTCTTTCATATTT
TATTTTAGCCCAAACTAAAGAAATTAAACTTTCAGTCAAACCAGCCGTGG
ATTTCCCTGTTGATTTGTATTACCTTATGGACATGTCAAAATCCATGGAA
GATGATTTAGAAAAATTGCGATCTTTGGGTACACAAATTGGTAAGTACTA
GTTCATCACTTCACCATACTGTTACTTTATTTATTGCTAGCATTCTTATC
TTGGTTAGGTTAATGTAGTCTTCAGGAACTCACCCATCTGAAAATCAAAT
TGTTTCTTTATTACCATTGATGCTGGTCAAAAATAGTGTGACATTTTTAT
TTCTC

Coding sequence (CDS) from alignment at sc0005377:3138..4542-

>TCONS_00044326 ID=TCONS_00044326|Name=TCONS_00044326|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at sc0005377:3138..4542- (Clytia hemisphaerica)
CCCAAACTAAAGAAATTAAACTTTCAGTCAAACCAGCCGTGGATTTCCCT
GTTGATTTGTATTACCTTATGGACATGTCAAAATCCATGGAAGATGATTT
AGAAAAATTGCGATCTTTGGGTACACAAATTGGTAAGTACTAGGAAGTCA
AGAAAGATCCCTTTCAACCAACTGTCCAAATTTCACCCCAAAAAGTTTCA
GTCAAATTAAGACCAGGACTATACTGAAGGAGATAACTATGCACGACCAA
GATGCAACTACAAGAATGTATTAGAAGGATTTGATTGTAAAGATATTATG
GACATCCAAGGCAAAATTACACCAAAAATCCATGCATTGTAAACAGTGAT
TGTGGCTCCTGCTTGCGGGCTAATGGTGACTGTGCATTTTGTAAAGATCC
ACTTTTAGTTAAAGATAAAAACATGAAACTAGAGATTTTAATACTGTTTT
CAATTGCTTGGTTACACATACAAGCCCAAACTAAAGAAATTAAACTTTCA
GTCAAACCAGCCGTGGATTTCCCTGTTGATTTGTATTACCTTATGGACAT
GTCAAAATCCATGGAAGATGATTTAGAAAAATTGCGATCTTTGGGTACAC
AAATTGGTAAGTACTAGGAAGTCAAGAAAGATCCCTTTCAACCAACTGTC
CAAATTTCACCCCAAAAAGTTTCAGTCAAATTAAGACCAGGACTATACTG
AAGGAGATAACTATGCACGACCAAGATGCAACTACAAGAATGTATTAGAA
GGATTTGATTGTAAAGATATTATGGACATCCAAGGCAAAATTACACCAAA
AATCCATGCATTGTAAACAGTGATTGTGGCTCCTGCTTGCGGGCTAATGG
TGACTGTGCATTTTGTAAAGATCCACTTTTAGTTAAAGATAAAAACATGA
AACTAGAGATTTTAATACTGTTTTCAATTGCTTGGTTACACATACAAGCC
CAAACTAAAGAAATTAAACTTTCAGTCAAACCAGCCGTGGATTTCCCTGT
TGATTTGTATTACCTTATGGACATGTCAAAATCCATGGAAGATGATTTAG
AAAAATTGCGATCTTTGGGTACACAAATTGGTAAGTACTAGGAAGTCAAG
AAAGATCCCTTTCAACCAACTGTCCAAATTTCACCCCAAAAAGTTTCAGT
CAAATTAAGACCAGGACTATACTGAAGGAGATAACTATGCACGACCAAGA
TGCAACTACAAGAATGTATTAGAAGGATTTGATTGTAAAGATATTATGGA
CATCCAAGGCAAAATTACACCAAAAATCCATGCATTGTAAACAGTGATTG
TGGCTCCTGCTTGCGGGCTAATGGTGACTGTGCATTTTGTAAAGATCCAC
TTTTAGTTAAAGATAAAAACATGAAACTAGAGATTTTAATACTGTTTTCA
ATTGCTTGGTTACACATACAAGCCCAAACTAAAGAAATTAAACTTTCAGT
CAAACCAGCCGTGGATTTCCCTGTTGATTTGTATTACCTTATGGACATGT
CAAAATCCATGGAAGATGATTTAGAAAAATTGCGATCTTTGGGTACACAA
ATTGGTAAGTACTAGGAAGTCAAGAAAGATCCCTTTCAACCAACTGTCCA
AATTTCACCCCAAAAAGTTTCAGTCAAATTAAGACCAGGACTATACTGAA
GGAGATAACTATGCACGACCAAGATGCAACTACAAGAATGTATTAGAAGG
ATTTGATTGTAAAGATATTATGGACATCCAAGGCAAAATTACACCAAAAA
TCCATGCATTGTAAACAGTGATTGTGGCTCCTGCTTGCGGGCTAATGGTG
ACTGTGCATTTTGTAAAGATCCACTTTTAGTTAAAGATAAAAACATGAAA
CTAGAGATTTTAATACTGTTTTCAATTGCTTGGTTACACATACAAGCCCA
AACTAAAGAAATTAAACTTTCAGTCAAACCAGCCGTGGATTTCCCTGTTG
ATTTGTATTACCTTATGGACATGTCAAAATCCATGGAAGATGATTTAGAA
AAATTGCGATCTTTGGGTACACAAATTGGTAAGTACTAGGAAGTCAAGAA
AGATCCCTTTCAACCAACTGTCCAAATTTCACCCCAAAAAGTTTCAGTCA
AATTAAGACCAGGACTATACTGAAGGAGATAACTATGCACGACCAAGATG
CAACTACAAGAATGTATTAGAAGGATTTGATTGTAAAGATATTATGGACA
TCCAAGGCAAAATTACACCAAAAATCCATGCATTGTAAACAGTGATTGTG
GCTCCTGCTTGCGGGCTAATGGTGACTGTGCATTTTGTAAAGATCCACTT
TTAGTTAAAGATAAAAACATGAAACTAGAGATTTTAATACTGTTTTCAAT
TGCTTGGTTACACATACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027959XLOC_027959Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044326-proteinTCONS_00044326-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044326-exon-sc0005377-1575043694:4470..4542TCONS_00044326-exon-sc0005377-1575043694:4470..4542Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1575043694:4273..4352TCONS_00044326-exon-sc0005377-1575043694:4273..4352Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1575043694:3935..4039TCONS_00044326-exon-sc0005377-1575043694:3935..4039Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1575043694:3550..3622TCONS_00044326-exon-sc0005377-1575043694:3550..3622Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1575043694:3138..3434TCONS_00044326-exon-sc0005377-1575043694:3138..3434Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1510915933:4470..4542TCONS_00044326-exon-sc0005377-1510915933:4470..4542Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1510915933:4273..4352TCONS_00044326-exon-sc0005377-1510915933:4273..4352Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1510915933:3935..4039TCONS_00044326-exon-sc0005377-1510915933:3935..4039Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1510915933:3550..3622TCONS_00044326-exon-sc0005377-1510915933:3550..3622Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1510915933:3138..3434TCONS_00044326-exon-sc0005377-1510915933:3138..3434Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1491911889:4470..4542TCONS_00044326-exon-sc0005377-1491911889:4470..4542Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1491911889:4273..4352TCONS_00044326-exon-sc0005377-1491911889:4273..4352Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1491911889:3935..4039TCONS_00044326-exon-sc0005377-1491911889:3935..4039Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1491911889:3550..3622TCONS_00044326-exon-sc0005377-1491911889:3550..3622Clytia hemisphaericaexon
TCONS_00044326-exon-sc0005377-1491911889:3138..3434TCONS_00044326-exon-sc0005377-1491911889:3138..3434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005377supercontigsc0005377:3138..4542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.6341	48.0551	131.726	141.817	168.195	126.955	147.723	166.118	117.374	164.742	111.691	82.7825	109.022	86.0849	76.4469	92.049	126.173	165.938	72.277	106.62	103.888	113.805	80.4824	106.534	88.9999	98.01	431.554	379.406	402.515	453.666
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR033760Integrin_beta_N
IPR002035VWF_A
Blast
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BLAST of TCONS_00044326 vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.555e-18
Identity = 43/138 (31.16%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:   64 HIQAKNPCIVNSDCGSCLRANGDCAFCKDPDYTEGDNYARPRCNYKNVLEGFDC--KDIMDIQGKITEVKKDPF------QPTVQISPQKVSVKLRPAQTKEIKLSVKPAVDFPVDLYYLMDMSKSMEDDLEKLRSLG 453
            H+     C     C  C+ ++  CA+CK  ++T        RC  +  L    C  +++ + +G+   ++  P       +   Q++PQ+V V LRP + +++++    A  +PVDLYYLMD+S SM+DDLE++R LG
Sbjct:   38 HLSMLGSCQPAPSCQKCILSHPSCAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLG 175
The following BLAST results are available for this feature:
BLAST of TCONS_00044326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB75.555e-1831.16Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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