TCONS_00044326-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044326-protein
Unique NameTCONS_00044326-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044326-protein ID=TCONS_00044326-protein|Name=TCONS_00044326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
LLVKDKNMKLEILILFSIAWLHIQAKNPCIVNSDCGSCLRANGDCAFCKD
PDYTEGDNYARPRCNYKNVLEGFDCKDIMDIQGKITEVKKDPFQPTVQIS
PQKVSVKLRPAQTKEIKLSVKPAVDFPVDLYYLMDMSKSMEDDLEKLRSL
GTQIGKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027959XLOC_027959Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044326TCONS_00044326Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR033760Integrin_beta_N
IPR002035VWF_A
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 126..144
score: 75.24
coord: 98..111
score: 50.79
coord: 32..48
score: 34.64
NoneNo IPR availableGENE3D2.60.40.1510coord: 85..156
e-value: 2.6E-17
score: 62.9
NoneNo IPR availableSUPERFAMILY103575Plexin repeatcoord: 26..77
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 125..155
e-value: 4.4E-11
score: 42.8
IPR033760Integrin beta N-terminalPFAMPF17205PSI_integrincoord: 27..75
e-value: 3.2E-8
score: 33.2
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 124..154

Blast
[Close]
BLAST of TCONS_00044326-protein vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.267e-19
Identity = 43/138 (31.16%), Postives = 74/138 (53.62%), Query Frame = 0 
Query:   22 HIQAKNPCIVNSDCGSCLRANGDCAFCKDPDYTEGDNYARPRCNYKNVLEGFDC--KDIMDIQGKITEVKKDPF------QPTVQISPQKVSVKLRPAQTKEIKLSVKPAVDFPVDLYYLMDMSKSMEDDLEKLRSLG 151
            H+     C     C  C+ ++  CA+CK  ++T        RC  +  L    C  +++ + +G+   ++  P       +   Q++PQ+V V LRP + +++++    A  +PVDLYYLMD+S SM+DDLE++R LG
Sbjct:   38 HLSMLGSCQPAPSCQKCILSHPSCAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLG 175
The following BLAST results are available for this feature:
BLAST of TCONS_00044326-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB73.267e-1931.16Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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