TCONS_00044137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044137
Unique NameTCONS_00044137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044137 ID=TCONS_00044137|Name=TCONS_00044137|organism=Clytia hemisphaerica|type=transcript|length=663bp
TAGATTTATCACAACGACGATCTGGAAGTCCACAACAACTCTTCAACGCA
AGTAATCGTGTATCACCTGTCAACGAAGAAGCTGATGATACAATTGTTGA
ATTTGATGAGAGAAAACCgaaaaggaaaatcaaaaatggcaaaaaggTCC
GAAGGTCAAGTTCTGCTAACTCTGCAACAAGACCTGTTATCAAGGGTTAC
CCCCGGAAGAATTTTTATAAAGTCATTGCACAAAGAGATTGCTGTAAATA
TGTCCCTGAGAAGAATGTCACACCTAATAATCCAAGGGCTATTGCTGATA
AGTGCTGTTGTGGACTAATGCGACATGAACATAAGAATTATATTGCGGAA
CCCAATGGAAAGACTTGGACACCAGAGGCATCAACTAGGCCAAGACGTAC
AACTTGTTATGGTGAACTGGAGTTTGCTGCTGACCCAAGTAAcaataaac
aaagaaaaaatTACATTAGATGTGCGCATGATACAGATGCTCAAAAACTA
TTAGACATGATGAAGAAAGATTGGAAGCTGAAGGTGCCAAATCTGGTCAT
ATCAGTAACTGGTGGAGCAATGAGTTTTTACATGAaaccaaatttgaaaa
aagccTTTGCGAAAGGTCTGCTGAAAGTAGCAACATCAACTTCAGCCTGG
ATAATCACAGGTC
Run BLAST on NCBI

protein sequence of TCONS_00044137-protein

>TCONS_00044137-protein ID=TCONS_00044137-protein|Name=TCONS_00044137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
DLSQRRSGSPQQLFNASNRVSPVNEEADDTIVEFDERKPKRKIKNGKKVR
RSSSANSATRPVIKGYPRKNFYKVIAQRDCCKYVPEKNVTPNNPRAIADK
CCCGLMRHEHKNYIAEPNGKTWTPEASTRPRRTTCYGELEFAADPSNNKQ
RKNYIRCAHDTDAQKLLDMMKKDWKLKVPNLVISVTGGAMSFYMKPNLKK
AFAKGLLKVATSTSAWIITG
Run BLAST on NCBI

transcript from alignment at sc0005049:771..2504-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044137 ID=TCONS_00044137|Name=TCONS_00044137|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at sc0005049:771..2504- (Clytia hemisphaerica)
TAGATTTATCACAACGACGATCTGGAAGTCCACAACAACTCTTCAACGCA
AGTAATCGTGTATCACCTGTCAACGAAGAAGCTGATGATACAATTGTTGA
ATTTGATGAGAGAAAACCGAAAAGGAAAATCAAAAATGGCAAAAAGGTCC
GAAGGTCAAGTTCTGCTAACTCTGCAACAAGACCTGTTATCAAGGTTAGT
TTTTCTCAACTTTTTTTTTCAGCCACAGACTGTACTTTAATTATCAAGGC
TCCATTATTTATCGCATCTTTAACAATCATTATAATAATACTTCTTTAAA
GTAATTCTTTTTAAAAACTCATTTATTGTTCATTCTTTTCATAGGGTTAC
CCCCGGAAGAATTTTTATAAAGTCATTGCACAAAGAGATTGCTGTAAATA
TGTCCCTGAGAAGAATGTCACACCTAATAATCCAAGGTAACTTTTTCTTT
CAATAATATATAAAGTTGACATTTTTTTATTAAAATCTGAACCTAAATTG
CTCCTGTTCCGCCCCAAAAATTATAATTTTTAAGCAAAAGCAACCCTGAT
CAGACAATTTGCCCAACCCACTTTAAATCGTTATTTTGAGTCGTGCAAGT
GTTACTGCTTGTAGTGTATCACTGGTATTAAGCCTTGTTTATTAGAAATG
CTTCTCAGCGGTTTTAAAAATCTTCTAATTGATAGAAATTAGTGATTCAT
TATCATTCTTGTTTATACTATACTAATGATGGTGTAAGGCGAAATATGTG
ATGAAATAGATATTGATTTTTTCTAATGATTGTCGTACCCTTTCAAGTGG
ATCTAGATTTTTATTAGGTACTACTATCATTGGTCTTTTTCTAAAGATTG
TTTTATCAGATGTAGTTGAAAATAATAGTAAATTTAACAAAAATCATAAT
AATGCTTGCCAAAAATCTTTTAAGAACTTTTAAATCTTTTTATCTAGGGC
TATTGCTGATAAGTGCTGTTGTGGACTAATGCGACATGAACATAAGAATT
ATATTGCGGAACCCAATGGAAAGACTTGGACACCAGAGGCATCAACTAGG
CCAAGACGTACAACTTGTTATGGTGAACTGGAGTTTGCTGCTGACCCAAG
TAACAATAAACAAAGAAAAAATGTATGTGACTTAATTTTGTTCTAAAGTT
CTCACAAAATTTTATTTTATGTTATCTTATATCAACATACAAAAACCTAG
TTATCGGCGAGTTTAAGTCTTTGTTGTTTTGTGCACACAATTGTATAGGT
TTTTCATTCAAAGTATTAAAAACAAAATAATTGAGGTGTTTTCTTCATAA
ATGCACACCTTTTTACATCTATATTATAACTATTTAAGCTAACACGAATT
GGTCACCCTTGCGTTAATTACAACCGTTTTAACAAAATTTGAGCCGAGGT
AATTTTCGAAAACCCTGCCTTTCCTGTTAATAATAAAATTGTTGCACTTA
TTTTTCCACGTTAAAGACTTGATTAGTGTTAGAAGTGTAATAAGTCAGTT
AAATGATATCTTTAACCAATTCATACTTTCAGTACATTAGATGTGCGCAT
GATACAGATGCTCAAAAACTATTAGACATGATGAAGAAAGATTGGAAGCT
GAAGGTGCCAAATCTGGTCATATCAGTAACTGGTGGAGCAATGAGTTTTT
ACATGAAACCAAATTTGAAAAAAGCCTTTGCGAAAGGTCTGCTGAAAGTA
GCAACATCAACTTCAGCCTGGATAATCACAGGTC

Coding sequence (CDS) from alignment at sc0005049:771..2504-

>TCONS_00044137 ID=TCONS_00044137|Name=TCONS_00044137|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at sc0005049:771..2504- (Clytia hemisphaerica)
TACATTAGATGTGCGCATGATACAGATGCTCAAAAACTATTAGACATGAT
GAAGAAAGATTGGAAGCTGAAGGTGCCAAATCTGGTCATATCAGTAACTG
GTGGAGCAATGAGTTTTTACATGAAACCAAATTTGAAAAAAGCCTTTGCG
AAAGGTCTGCTGAAAGTAGCAACATCAACTTCAGCCTGGATAATCACAGG
TGGCTATTGCTGATAAGTGCTGTTGTGGACTAATGCGACATGAACATAAG
AATTATATTGCGGAACCCAATGGAAAGACTTGGACACCAGAGGCATCAAC
TAGGCCAAGACGTACAACTTGTTATGGTGAACTGGAGTTTGCTGCTGACC
CAAGTAACAATAAACAAAGAAAAAATGGTTACCCCCGGAAGAATTTTTAT
AAAGTCATTGCACAAAGAGATTGCTGTAAATATGTCCCTGAGAAGAATGT
CACACCTAATAATCCAAGGATTTATCACAACGACGATCTGGAAGTCCACA
ACAACTCTTCAACGCAAGTAATCGTGTATCACCTGTCAACGAAGAAGCTG
ATGATACAATTGTTGAATTTGATGAGAGAAAACCGAAAAGGAAAATCAAA
AATGGCAAAAAGGTCCGAAGGTCAAGTTCTGCTAACTCTGCAACAAGACC
TGTTATCAAGTACATTAGATGTGCGCATGATACAGATGCTCAAAAACTAT
TAGACATGATGAAGAAAGATTGGAAGCTGAAGGTGCCAAATCTGGTCATA
TCAGTAACTGGTGGAGCAATGAGTTTTTACATGAAACCAAATTTGAAAAA
AGCCTTTGCGAAAGGTCTGCTGAAAGTAGCAACATCAACTTCAGCCTGGA
TAATCACAGGTGGCTATTGCTGATAAGTGCTGTTGTGGACTAATGCGACA
TGAACATAAGAATTATATTGCGGAACCCAATGGAAAGACTTGGACACCAG
AGGCATCAACTAGGCCAAGACGTACAACTTGTTATGGTGAACTGGAGTTT
GCTGCTGACCCAAGTAACAATAAACAAAGAAAAAATGGTTACCCCCGGAA
GAATTTTTATAAAGTCATTGCACAAAGAGATTGCTGTAAATATGTCCCTG
AGAAGAATGTCACACCTAATAATCCAAGGATTTATCACAACGACGATCTG
GAAGTCCACAACAACTCTTCAACGCAAGTAATCGTGTATCACCTGTCAAC
GAAGAAGCTGATGATACAATTGTTGAATTTGATGAGAGAAAACCGAAAAG
GAAAATCAAAAATGGCAAAAAGGTCCGAAGGTCAAGTTCTGCTAACTCTG
CAACAAGACCTGTTATCAAGTACATTAGATGTGCGCATGATACAGATGCT
CAAAAACTATTAGACATGATGAAGAAAGATTGGAAGCTGAAGGTGCCAAA
TCTGGTCATATCAGTAACTGGTGGAGCAATGAGTTTTTACATGAAACCAA
ATTTGAAAAAAGCCTTTGCGAAAGGTCTGCTGAAAGTAGCAACATCAACT
TCAGCCTGGATAATCACAGGTGGCTATTGCTGATAAGTGCTGTTGTGGAC
TAATGCGACATGAACATAAGAATTATATTGCGGAACCCAATGGAAAGACT
TGGACACCAGAGGCATCAACTAGGCCAAGACGTACAACTTGTTATGGTGA
ACTGGAGTTTGCTGCTGACCCAAGTAACAATAAACAAAGAAAAAATGGTT
ACCCCCGGAAGAATTTTTATAAAGTCATTGCACAAAGAGATTGCTGTAAA
TATGTCCCTGAGAAGAATGTCACACCTAATAATCCAAGGATTTATCACAA
CGACGATCTGGAAGTCCACAACAACTCTTCAACGCAAGTAATCGTGTATC
ACCTGTCAACGAAGAAGCTGATGATACAATTGTTGAATTTGATGAGAGAA
AACCGAAAAGGAAAATCAAAAATGGCAAAAAGGTCCGAAGGTCAAGTTCT
GCTAACTCTGCAACAAGACCTGTTATCAAGTACATTAGATGTGCGCATGA
TACAGATGCTCAAAAACTATTAGACATGATGAAGAAAGATTGGAAGCTGA
AGGTGCCAAATCTGGTCATATCAGTAACTGGTGGAGCAATGAGTTTTTAC
ATGAAACCAAATTTGAAAAAAGCCTTTGCGAAAGGTCTGCTGAAAGTAGC
AACATCAACTTCAGCCTGGATAATCACAGGTGGCTATTGCTGATAAGTGC
TGTTGTGGACTAATGCGACATGAACATAAGAATTATATTGCGGAACCCAA
TGGAAAGACTTGGACACCAGAGGCATCAACTAGGCCAAGACGTACAACTT
GTTATGGTGAACTGGAGTTTGCTGCTGACCCAAGTAACAATAAACAAAGA
AAAAATGGTTACCCCCGGAAGAATTTTTATAAAGTCATTGCACAAAGAGA
TTGCTGTAAATATGTCCCTGAGAAGAATGTCACACCTAATAATCCAAGGA
TTTATCACAACGACGATCTGGAAGTCCACAACAACTCTTCAACGCAAGTA
ATCGTGTATCACCTGTCAACGAAGAAGCTGATGATACAATTGTTGAATTT
GATGAGAGAAAACCGAAAAGGAAAATCAAAAATGGCAAAAAGGTCCGAAG
GTCAAGTTCTGCTAACTCTGCAACAAGACCTGTTATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027784XLOC_027784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044137-exon-sc0005049-1575043694:2311..2504TCONS_00044137-exon-sc0005049-1575043694:2311..2504Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1575043694:2069..2160TCONS_00044137-exon-sc0005049-1575043694:2069..2160Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1575043694:1383..1557TCONS_00044137-exon-sc0005049-1575043694:1383..1557Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1575043694:771..972TCONS_00044137-exon-sc0005049-1575043694:771..972Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1510915933:2311..2504TCONS_00044137-exon-sc0005049-1510915933:2311..2504Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1510915933:2069..2160TCONS_00044137-exon-sc0005049-1510915933:2069..2160Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1510915933:1383..1557TCONS_00044137-exon-sc0005049-1510915933:1383..1557Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1510915933:771..972TCONS_00044137-exon-sc0005049-1510915933:771..972Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1491911889:2311..2504TCONS_00044137-exon-sc0005049-1491911889:2311..2504Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1491911889:2069..2160TCONS_00044137-exon-sc0005049-1491911889:2069..2160Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1491911889:1383..1557TCONS_00044137-exon-sc0005049-1491911889:1383..1557Clytia hemisphaericaexon
TCONS_00044137-exon-sc0005049-1491911889:771..972TCONS_00044137-exon-sc0005049-1491911889:771..972Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044137-proteinTCONS_00044137-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005049supercontigsc0005049:771..2504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.81321	3.27675	1.23871	1.21189	26.8726	22.2344	16.8785	17.4945	13.1702	12.2351	13.4591	12.7508	5.45702	5.23539	2.17429	2.61906	2.22919	3.9083	2.65823	3.3032	4.75995	5.97019	2.50878	4.31731	7.71886	9.28503	3.85747	2.85889	1.04082	1.4139
Blast
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BLAST of TCONS_00044137 vs. Swiss-Prot (Human)
Match: TRPM2 (Transient receptor potential cation channel subfamily M member 2 OS=Homo sapiens GN=TRPM2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.450e-19
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 3 
Query:  225 IAQRDCCKYVPEKNVTPNNPRAIADKCCCGLMRHEHKNYIAEPN---GKTWTPEASTRPRRTTCYGELEFAADPSNNKQRKNYIRCAHDTDAQXXXXXXXXXXXXXVPNLVISVTGGAMSFYMKPNLKKAFAKGLLKVATSTSAWIITG 662
            I +++C  +V    ++          C CG    +H     +P+   G  W P+   +   T  +G++ F      +++ K Y+R + DT +  +  +M + W L VPNL+ISVTGGA +F MKP LK  F +GL+KVA +T AWIITG
Sbjct:   67 IKKKECVYFVESSKLSDAGKVV----CQCGYTHEQHLEEATKPHTFQGTQWDPKKHVQEMPTDAFGDIVFTG---LSQKVKKYVRVSQDTPSSVIYHLMTQHWGLDVPNLLISVTGGAKNFNMKPRLKSIFRRGLVKVAQTTGAWIITG 208
The following BLAST results are available for this feature:
BLAST of TCONS_00044137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPM22.450e-1934.90Transient receptor potential cation channel subfam... [more]
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