TCONS_00044137-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00044137-protein
Unique Name	TCONS_00044137-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	220

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00044137-protein ID=TCONS_00044137-protein|Name=TCONS_00044137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
DLSQRRSGSPQQLFNASNRVSPVNEEADDTIVEFDERKPKRKIKNGKKVR
RSSSANSATRPVIKGYPRKNFYKVIAQRDCCKYVPEKNVTPNNPRAIADK
CCCGLMRHEHKNYIAEPNGKTWTPEASTRPRRTTCYGELEFAADPSNNKQ
RKNYIRCAHDTDAQKLLDMMKKDWKLKVPNLVISVTGGAMSFYMKPNLKK
AFAKGLLKVATSTSAWIITG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027784	XLOC_027784	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00044137	TCONS_00044137	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Blast

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BLAST of TCONS_00044137-protein vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 7.382e-25
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   98 ADKCCCGLMRHEH--------------KNYIAEPNGKTWTPEASTRPRRTTCYGELEFAADPSNNKQRKNYIRCAHDTDAQKLLDMMKKDWKLKVPNLVISVTGGAMSFYMKPNLKKAFAKGLLKVATSTSAWIITG 220
            +++CCCG   ++H              ++   E   + W+    T+   T  YG LEF     +NK    YIR ++DT    LL +M KDW+L++P L+ISV GG  +F M+P LK+ F KGL+K A +T AWI TG
Sbjct:    4 SNRCCCGQFTNQHIPPLPSATPSKNEEESKQVETQPEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAM--YIRVSYDTKPDSLLHLMVKDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTG 138

The following BLAST results are available for this feature:

BLAST of TCONS_00044137-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00044137-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPM1	7.382e-25	37.96	Transient receptor potential cation channel subfam...	[more]

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TCONS_00044137-protein (polypeptide) - C. hemisphaerica