TCONS_00044107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044107
Unique NameTCONS_00044107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044107 ID=TCONS_00044107|Name=TCONS_00044107|organism=Clytia hemisphaerica|type=transcript|length=285bp
GTTTGACGTGTGTGTAAGCTATGGTTATCTGGTATCGAGTAATTTAACAA
ATTCGTGTAGTACATTCTAGAGccacaaacaaaaaacacacataTAAAGA
TCATCATAGTTTCAATGAAATATGTACCGAAAGTCTTTGGTTGTCCATCT
TTTATACTTCTTGGTAATATTACTGACTGTTGGAAAAGTTGATGCTCAGC
AAAAAACTTGCAGATTATCAGGTATTTGTACGTACACATGTCAATTAAAT
GAAGATTGTTTCTTCAGAGCATGCACAGCCTCGAT
Run BLAST on NCBI

transcript from alignment at sc0004977:1271..3983-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044107 ID=TCONS_00044107|Name=TCONS_00044107|organism=Clytia hemisphaerica|type=transcript|length=2713bp|location=Sequence derived from alignment at sc0004977:1271..3983- (Clytia hemisphaerica)
GTTTGACGTGTGTGTAAGCTATGGTTATCTGGTATCGAGTAATTTAACAA
ATTCGTGTAGTACATTCTAGAGCCACAAACAAAAAACACACATATAAAGA
TCATCATAGTTTCAATGAAATATGTACCGAAAGTCTTTGGTTGTCCATCT
TTTATACTTCTTGGTAATATTACTGACTGTTGGAAAAGTTGATGCTCAGC
AAAAAAGTAAGTACTGATTCTCAAGAGCAGGATATTATCTTGAGTGGTTC
TGGGTGAGGGTAACCATGTTGCAAGGTGACCGGTACAAGCCGCCTGCTTT
TCACCCATGGATCATAGCGAGACTAAGAAGGAAGAAAAAAATAAGATAAG
CTTTGTGAATTTCACGATCCTTAGGGACTGATTTTTCCACATTTCTATTT
GATCGATATGAATTTTCCTATTTTTCAGATCTTTTCAGAGAAACTAAAGT
CTATTCACGATAAGTGTGCACTCTTTTTTCTTTTACTACCTATAACTTTT
GAAGGAATTCGTCAATCTTTACAAATTTGGTGTCATTGAAAAGATATTAG
TGAGTGGAACAATTTGAAATAAAAAAATCTTCTAAAAAATTCTGAAAATG
AAGATGAAAATGAAGAAGAAAAAAACAGAGATCATGTAGAAAAGTGCTAT
AACTATCATTTTCACTGAAGCGAAACCTTGATTATCGAACGTCATCACTG
TGAAAAAATTTCTCAAAAATAATCATTCAATCAAAAGATATCAAACAAAG
TTATAAGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATCACTTATTAACTTTGTATCATAACTTTGTATTGAATAAATATTT
TAGTGAAATTTCTTCACAGTGATGACCTCCAAAGATCAAAAAATCCCTCA
AGTGAAATTGAAAGTTATAGCACTTTTCTACAAGATCTTCGTTTTTTCTT
CTTCATTTTCATCTTCATTTTTAGAATTTTTTTGAAGCTTTTTTTATTTT
AAATTGTCCCAATCACAAATATCTCTCCAACGATACCAAATTTATAAAGA
TTGAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACT
TATCGTGAATAGACTTTAACATTTAATATTCCTATTTATCGGACCTCTAG
AAGGACCCAAAAAGGTACCCTTAAGGAAGGGTGCCATATACCCGTACCTT
CACTTGCTTAGGTAACACTCGGGGCGTTTCCATATGTTAAACAGGGTTTA
CCATATAAGATTGATTCAGAATTAGACTCTTAACCTTTTCAGCCCGTCGG
ACGAGTATAGTCGTCGAGCATACGTTCCGGCGNCTTAATGGACAGCTCGA
TACAGCTCGATCAAATTTTTATAGAGTTTTTTTAAACAAGAAAATAATGT
TTGACCTGCTAGAGTTTATTTTTAAGTTTTTATCAAGTTATGAGAAGTTC
GACCAAACATTTCATAGACTTGCTACTTTTGCTATTAACATTCTTTTGAA
TATCTATATTTGTCAAGTCTGTATTCATTAGTTCTAACAGAGATGTTAAA
ACAACACTTTTTCTATCTTGAACGAAACTGGCGCTAAACTGTCTTTACCT
GGTTGATCATCAATCGATTAAATTTCGTCATGTGAGTGTAGTAAGAAGAA
ATTTGTAAATTATAAGCGGAGCTTATCTTAAGTTATTTCTAATCTTCCAT
GATGAACCAGAACATTCACTACACGGCCGCTTCCTAAATCGCACAACTAT
CCATTAAACCTTTTAGGGCTTTTAAAACGGCTTTTAGGGGTGGTTCAGAA
CTAGGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAGTA
TGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTGTGACGTAAGGTAA
CTTTTGACAAATTTTTTTTTGATGACGTCACTCATCATGCCCAAAGTGAG
CAAAATCCAAAAATGTCCTTTGTTCTTATAAATAGCTATTGTATTCTAAC
AAAGGCTTTAGAAAAAAGTTGCCCGAGTTTAAAATGCTTATTTTTATCCT
AAATATTCAATAAATTACGGTTTAAACGATATATTTTACATTGAAAATAA
ATTTGTATTGGGAAAGTATCAATTTTTGTGACACCTTTTTGTCAGAAATG
CCATCATGCTCAAGGTGTGAAAATATTTAGGTGTCAAATTTTTTTTATTT
TGAAGCTAAATAAAAGTTAGGAATTTACAGAAAATTTCATGGCAAAAGCT
CTATTATTTAAGGAGCTATTACCAATAGTTTGACCTCCGAACAGAAAGAG
CCCCCCCCTAGGCCGAATAGGGTTAAGAAGGGATGGCGAGTGGTCGAGCG
CCTTCTCTGAATCCTAAATAGCTAAGAATGTGAATTTCGCAGTAGCTTGT
TACAGTGAGATTTCCCCTATAATGAAGTTATTTCAATCTTTTGAACCTCT
GATAACTTTAGTTTAAGCGGGATTTGCAATCTTATCAATCTTAACTTTAA
AGTTAAAATTTCATTGGCCTTCTATGAAGAATTTCGTTTAGTTGATAAAA
GAGCTCAAAGCTATAAAAGAGAAATAGTATTGAAAGTTATGGCATGTTTT
TTAGGATTTTGATTCAAGTTCAATTTTCTTCTAGCTTGCAGATTATCAGG
TATTTGTACGTACACATGTCAATTAAATGAAGATTGTTTCTTCAGAGCAT
GCACAGCCTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027754XLOC_027754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044107-exon-sc0004977-1575043694:3778..3983TCONS_00044107-exon-sc0004977-1575043694:3778..3983Clytia hemisphaericaexon
TCONS_00044107-exon-sc0004977-1575043694:1271..1349TCONS_00044107-exon-sc0004977-1575043694:1271..1349Clytia hemisphaericaexon
TCONS_00044107-exon-sc0004977-1510915933:3778..3983TCONS_00044107-exon-sc0004977-1510915933:3778..3983Clytia hemisphaericaexon
TCONS_00044107-exon-sc0004977-1510915933:1271..1349TCONS_00044107-exon-sc0004977-1510915933:1271..1349Clytia hemisphaericaexon
TCONS_00044107-exon-sc0004977-1491911889:3778..3983TCONS_00044107-exon-sc0004977-1491911889:3778..3983Clytia hemisphaericaexon
TCONS_00044107-exon-sc0004977-1491911889:1271..1349TCONS_00044107-exon-sc0004977-1491911889:1271..1349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004977supercontigsc0004977:1271..3983 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00125567	0	0	0	0	3.25944	0.593624	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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