TCONS_00043833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043833
Unique NameTCONS_00043833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043833 ID=TCONS_00043833|Name=TCONS_00043833|organism=Clytia hemisphaerica|type=transcript|length=1783bp
NTCTCAACACTTCTCCAATCGCAATGGGTCTCACACCTGGGTTTTTATCC
AAAGGAATCAGTCGACTTGATAGCAATGGTTCCAGGGAGCCATCCTGCCA
AAGTTGGGGCTTGTAACATAACTTGCGTGACAGTTTGGCGATGGCGTCAC
ACAGATTCATACTGTGAGCTCCGAAAGAGGCTGATGTTAAAATCCTTCTC
CAACCATCCGCATCAAGAGTTGATGGACCCGAAATGGATGGATGCAAAAG
AATTGATTCTTTAAAGGTttatagaactcgagaaaattcacttcaaaaag
ggggacttttttctgggacacccggtatctATTTACAATTCAAATCAATT
TACAATCTTAATTTTCTGatgtgataaaaataaaatcactaTCTAGtcct
tttcatttttatttcaaataggTTGATATTTAATATGTACAagagttttt
atcaaaaataagctaattttttttccttcattaCTATATAGTTATGAAGT
CGTCCTGTTAGCGTTCAGACAAACAGACATACCATTAATTATTCGAATCA
GGTTgtgtaaaaacaataaaaaatcactATTCCAAGTTACAGAAAAAACA
TCAGTTGGTAATCCCAACCAAAGTGTGAAGTCGAGTgtggtttgtttata
tttctatATTCAAGAGGACATCGTATGGGATTTTTACTGTTTCTTCTTAT
CAACAGTGACACCAGTTAACCAGCTCCACAAATGAATGTTAATATGAACA
GCTAAGAAATTATAAACACAATCTGGTAACCATTCACCAAGGTAACCAAA
CAAACCATGAGACCAATAACCATAATTGGTGTTGCTATAACCTAAAGTAC
TCAATGCACTATTTGCATAAGTTACCGGATCTGGAATGAAAAAACTTGGT
TTAGCATTGTTAGTCATGTTAGTGCTAACATAAAATGGGTGAATGCATTG
GAATGTTATGTTTTCCTCGGCATATTCGTATTGCAAGGTTTTGGTCAAAT
AATCCACATATTTCTTAGATGCTGAATAGCTGGACATGGTTGGTGTTGGA
TGAGCACAAGCACCAGATCCAATATTGATGATAGCTCCTTTACCACTTGA
GATCATCCCTGGTAGAACCATAAAAGTCATTGTTGTCAGAGCAGACATAT
TCAAGTTGATAATTCCATCATGTGTTTCTCTTGGGACGGTCAAGAAAAAT
TGCATACGCTTAAAGAATAATCCGACATTGTTAACTAAAATACCAACATC
AAGCTCATCCAACTTGCTTTTTAAAGCATCATAAACTGAACTATCACTGA
GTTTCGTCATATCTAACGGATAACAAATGGTTTTGACTTTGTTTCCATAT
AACCTAAAAATTTCTTGTTGTACTTTTTGAAGTTTGACAACATTTCTGCT
GATCAAAAACACATTCATGTTACGTGCTGCAAGTTGGATTGCATATCCAC
GACCAATCCCTTCAGAGGCACCAGTTACAACAGCCCATCTTCCTTTATAA
TGTTTGGCAAACTCAGAGTTTGGAGAATacctaaaatattgaaaatatgg
aTAAATAATGTATAATGAACAATTTGTAACCCTTGATCGAAATTAAAGTA
ATGTGATAAAAGTTAGACACTAAAGCTTTGTGTTATACAGAAAAAATTAG
TTCTTTGTTAGtttcttgaaagttatgaaacCCAAATCAATCTTtgtaga
ccagcggccgaggcagtggattgtgtcacttcgtagggcaccccttagat
cagggcaaatttttgatattatgctcctaatag
Run BLAST on NCBI

protein sequence of TCONS_00043833-protein

>TCONS_00043833-protein ID=TCONS_00043833-protein|Name=TCONS_00043833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MNVFLISRNVVKLQKVQQEIFRLYGNKVKTICYPLDMTKLSDSSVYDALK
SKLDELDVGILVNNVGLFFKRMQFFLTVPRETHDGIINLNMSALTTMTFM
VLPGMISSGKGAIINIGSGACAHPTPTMSSYSASKKYVDYLTKTLQYEYA
EENITFQCIHPFYVSTNMTNNAKPSFFIPDPVTYANSALSTLGYSNTNYG
YWSHGLFGYLGEWLPDCVYNFLAVHINIHLWSWLTGVTVDKKKQ
Run BLAST on NCBI

transcript from alignment at sc0004640:390..2172

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043833 ID=TCONS_00043833|Name=TCONS_00043833|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at sc0004640:390..2172 (Clytia hemisphaerica)
ctattaggagcataatatcaaaaatttgccctgatctaaggggtgcccta
cgaagtgacacaatccactgcctcggccgctggtctacaAAGATTGATTT
GGgtttcataactttcaagaaaCTAACAAAGAACTAATTTTTTCTGTATA
ACACAAAGCTTTAGTGTCTAACTTTTATCACATTACTTTAATTTCGATCA
AGGGTTACAAATTGTTCATTATACATTATTTAtccatattttcaatattt
taggtATTCTCCAAACTCTGAGTTTGCCAAACATTATAAAGGAAGATGGG
CTGTTGTAACTGGTGCCTCTGAAGGGATTGGTCGTGGATATGCAATCCAA
CTTGCAGCACGTAACATGAATGTGTTTTTGATCAGCAGAAATGTTGTCAA
ACTTCAAAAAGTACAACAAGAAATTTTTAGGTTATATGGAAACAAAGTCA
AAACCATTTGTTATCCGTTAGATATGACGAAACTCAGTGATAGTTCAGTT
TATGATGCTTTAAAAAGCAAGTTGGATGAGCTTGATGTTGGTATTTTAGT
TAACAATGTCGGATTATTCTTTAAGCGTATGCAATTTTTCTTGACCGTCC
CAAGAGAAACACATGATGGAATTATCAACTTGAATATGTCTGCTCTGACA
ACAATGACTTTTATGGTTCTACCAGGGATGATCTCAAGTGGTAAAGGAGC
TATCATCAATATTGGATCTGGTGCTTGTGCTCATCCAACACCAACCATGT
CCAGCTATTCAGCATCTAAGAAATATGTGGATTATTTGACCAAAACCTTG
CAATACGAATATGCCGAGGAAAACATAACATTCCAATGCATTCACCCATT
TTATGTTAGCACTAACATGACTAACAATGCTAAACCAAGTTTTTTCATTC
CAGATCCGGTAACTTATGCAAATAGTGCATTGAGTACTTTAGGTTATAGC
AACACCAATTATGGTTATTGGTCTCATGGTTTGTTTGGTTACCTTGGTGA
ATGGTTACCAGATTGTGTTTATAATTTCTTAGCTGTTCATATTAACATTC
ATTTGTGGAGCTGGTTAACTGGTGTCACTGTTGATAAGAAGAAACAGTAA
AAATCCCATACGATGTCCTCTTGAATatagaaatataaacaaaccacACT
CGACTTCACACTTTGGTTGGGATTACCAACTGATGTTTTTTCTGTAACTT
GGAATagtgattttttattgtttttacacAACCTGATTCGAATAATTAAT
GGTATGTCTGTTTGTCTGAACGCTAACAGGACGACTTCATAACTATATAG
taatgaaggaaaaaaaattagcttatttttgataaaaactctTGTACATA
TTAAATATCAAcctatttgaaataaaaatgaaaaggaCTAGAtagtgatt
ttatttttatcacatCAGAAAATTAAGATTGTAAATTGATTTGAATTGTA
AATagataccgggtgtcccagaaaaaagtccccctttttgaagtgaattt
tctcgagttctataaACCTTTAAAGAATCAATTCTTTTGCATCCATCCAT
TTCGGGTCCATCAACTCTTGATGCGGATGGTTGGAGAAGGATTTTAACAT
CAGCCTCTTTCGGAGCTCACAGTATGAATCTGTGTGACGCCATCGCCAAA
CTGTCACGCAAGTTATGTTACAAGCCCCAACTTTGGCAGGATGGCTCCCT
GGAACCATTGCTATCAAGTCGACTGATTCCTTTGGATAAAAACCCAGGTG
TGAGACCCATTGCGATTGGAGAAGTGTTGAGAN

Coding sequence (CDS) from alignment at sc0004640:390..2172

>TCONS_00043833 ID=TCONS_00043833|Name=TCONS_00043833|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0004640:390..2172 (Clytia hemisphaerica)
ATGAATGTGTTTTTGATCAGCAGAAATGTTGTCAAACTTCAAAAAGTACA
ACAAGAAATTTTTAGGTTATATGGAAACAAAGTCAAAACCATTTGTTATC
CGTTAGATATGACGAAACTCAGTGATAGTTCAGTTTATGATGCTTTAAAA
AGCAAGTTGGATGAGCTTGATGTTGGTATTTTAGTTAACAATGTCGGATT
ATTCTTTAAGCGTATGCAATTTTTCTTGACCGTCCCAAGAGAAACACATG
ATGGAATTATCAACTTGAATATGTCTGCTCTGACAACAATGACTTTTATG
GTTCTACCAGGGATGATCTCAAGTGGTAAAGGAGCTATCATCAATATTGG
ATCTGGTGCTTGTGCTCATCCAACACCAACCATGTCCAGCTATTCAGCAT
CTAAGAAATATGTGGATTATTTGACCAAAACCTTGCAATACGAATATGCC
GAGGAAAACATAACATTCCAATGCATTCACCCATTTTATGTTAGCACTAA
CATGACTAACAATGCTAAACCAAGTTTTTTCATTCCAGATCCGGTAACTT
ATGCAAATAGTGCATTGAGTACTTTAGGTTATAGCAACACCAATTATGGT
TATTGGTCTCATGGTTTGTTTGGTTACCTTGGTGAATGGTTACCAGATTG
TGTTTATAATTTCTTAGCTGTTCATATTAACATTCATTTGTGGAGCTGGT
TAACTGGTGTCACTGTTGATAAGAAGAAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027505XLOC_027505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043833-proteinTCONS_00043833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043833-exon-sc0004640-1491911889:390..2172TCONS_00043833-exon-sc0004640-1491911889:390..2172Clytia hemisphaericaexon
TCONS_00043833-exon-sc0004640-1510915933:390..2172TCONS_00043833-exon-sc0004640-1510915933:390..2172Clytia hemisphaericaexon
TCONS_00043833-exon-sc0004640-1575043694:390..2172TCONS_00043833-exon-sc0004640-1575043694:390..2172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004640supercontigsc0004640:390..2172 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.8141	3.42728	1.26588	1.21219	7.82908	5.3094	6.28966	7.38785	4.39551	3.66139	3.99927	3.12553	2.63875	2.80957	1.6596	1.52729	1.47127	1.2167	0.529598	0.722133	1.9305	1.86669	9.94195	8.04246	4.04125	6.16992	1.38103	1.96754	6.5963	5.70139
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00043833 vs. Swiss-Prot (Human)
Match: HSDL1 (Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Homo sapiens GN=HSDL1 PE=1 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 3.794e-64
Identity = 116/260 (44.62%), Postives = 166/260 (63.85%), Query Frame = -3 
Query:  777 RYSPNSEFAKHYKGRWAVVTGASEGIGRGYAIQLAARNMNVFLISRNVVKLQKVQQEIFRLYGNKVKTICYPLDMTKLSDSSVYDALKSKLDELDVGILVNNVGLFFKRMQFFLTVPRETHDGIINLNMSALTTMTFMVLPGMISSGKGAIINIGSGACAHPTPTMSSYSASKKYVDYLTKTLQYEYAEENITFQCIHPFYVSTNMTNNA----KPSFFIPDPVTYANSALSTLGYSNTNYGYWSHG---LFG-YLGEWL 1532
            R    ++  K Y GRWAVV+GA++GIG+ YA +LA+R +N+ LISRN  KLQ V ++I   Y  KV+T     D +  S   +Y  ++  L + DVGILVNNVG+F+   Q+F  +  +    IIN+N++A + M  +VLPGM+   KGAI+ I SG+C  PTP ++++SASK Y+D+ ++ LQYEYA + I  Q + PFYV+T+MT  +    + S+ +P P  YA+ A+STLG S    GYWSH    LF  Y+ EWL
Sbjct:   55 RLGSRADLIKQY-GRWAVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTY--KVETDIIVADFS--SGREIYLPIREALKDKDVGILVNNVGVFYPYPQYFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCSWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00043833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSDL13.794e-6444.62Inactive hydroxysteroid dehydrogenase-like protein... [more]
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