TCONS_00043766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043766
Unique NameTCONS_00043766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043766 ID=TCONS_00043766|Name=TCONS_00043766|organism=Clytia hemisphaerica|type=transcript|length=549bp
AAACCAAGGGCGACGATGTATGAATGTGACGATTGCGAAAAGACCTTTTC
CACAAAAAGCAACTACAATCGCCATGTTGCAAAAGCCCACCCTGAAGAat
ctgaagatgaagaagatgagGATCATCCAGACAGTGAGTCGATGTCCAAT
GATGAAGATTCTGATGACAGTGAACAATCTCAAGGTGATGAAGAAACAAT
AAATATCTGGGAGACCATGTTCAACGAATGCGAAGAGACTGGTTTATCaa
ttaatgaaatttataaATACAAGATCCTTTTTCTCCGGGCAATGAAAAAG
AATATGACTCATAAAGCCATCATGCAAACTTTGCAAAGAGTTAGAGACGA
AGAAGATATGGACTTTGAGGAAGCATTGGATTTTGCTATTGAAAAACGTC
GGTTTTTGATTCATCGacaaataattcaattttcaaatgatgaaatgaaa
gaatgaaacgAAACGATCTCTGTAATGGACACTTGTATTTTCATTAAAGC
TCTGAATATATTGCTCTCTGATTAGATAATACTtgtattttatttcttt
Run BLAST on NCBI

protein sequence of TCONS_00043766-protein

>TCONS_00043766-protein ID=TCONS_00043766-protein|Name=TCONS_00043766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
KPRATMYECDDCEKTFSTKSNYNRHVAKAHPEESEDEEDEDHPDSESMSN
DEDSDDSEQSQGDEETINIWETMFNECEETGLSINEIYKYKILFLRAMKK
NMTHKAIMQTLQRVRDEEDMDFEEALDFAIEKRRFLIHRQIIQFSNDEMK
E
Run BLAST on NCBI

transcript from alignment at sc0004547:3386..3934

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043766 ID=TCONS_00043766|Name=TCONS_00043766|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at sc0004547:3386..3934 (Clytia hemisphaerica)
aaagaaataaaatacaAGTATTATCTAATCAGAGAGCAATATATTCAGAG
CTTTAATGAAAATACAAGTGTCCATTACAGAGATCGTTTcgtttcattct
ttcatttcatcatttgaaaattgaattatttgtCGATGAATCAAAAACCG
ACGTTTTTCAATAGCAAAATCCAATGCTTCCTCAAAGTCCATATCTTCTT
CGTCTCTAACTCTTTGCAAAGTTTGCATGATGGCTTTATGAGTCATATTC
TTTTTCATTGCCCGGAGAAAAAGGATCTTGTATttataaatttcattaat
tGATAAACCAGTCTCTTCGCATTCGTTGAACATGGTCTCCCAGATATTTA
TTGTTTCTTCATCACCTTGAGATTGTTCACTGTCATCAGAATCTTCATCA
TTGGACATCGACTCACTGTCTGGATGATCctcatcttcttcatcttcaga
tTCTTCAGGGTGGGCTTTTGCAACATGGCGATTGTAGTTGCTTTTTGTGG
AAAAGGTCTTTTCGCAATCGTCACATTCATACATCGTCGCCCTTGGTTT

Coding sequence (CDS) from alignment at sc0004547:3386..3934

>TCONS_00043766 ID=TCONS_00043766|Name=TCONS_00043766|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0004547:3386..3934 (Clytia hemisphaerica)
tcattctttcatttcatcatttgaaaattgaattatttgtCGATGAATCA
AAAACCGACGTTTTTCAATAGCAAAATCCAATGCTTCCTCAAAGTCCATA
TCTTCTTCGTCTCTAACTCTTTGCAAAGTTTGCATGATGGCTTTATGAGT
CATATTCTTTTTCATTGCCCGGAGAAAAAGGATCTTGTATttataaattt
cattaattGATAAACCAGTCTCTTCGCATTCGTTGAACATGGTCTCCCAG
ATATTTATTGTTTCTTCATCACCTTGAGATTGTTCACTGTCATCAGAATC
TTCATCATTGGACATCGACTCACTGTCTGGATGATCctcatcttcttcat
cttcagatTCTTCAGGGTGGGCTTTTGCAACATGGCGATTGTAGTTGCTT
TTTGTGGAAAAGGTCTTTTCGCAATCGTCACATTCATACATCGTCGCCCT
TGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027442XLOC_027442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043766-exon-sc0004547-1491911889:3386..3934TCONS_00043766-exon-sc0004547-1491911889:3386..3934Clytia hemisphaericaexon
TCONS_00043766-exon-sc0004547-1510915933:3386..3934TCONS_00043766-exon-sc0004547-1510915933:3386..3934Clytia hemisphaericaexon
TCONS_00043766-exon-sc0004547-1575043694:3386..3934TCONS_00043766-exon-sc0004547-1575043694:3386..3934Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043766-proteinTCONS_00043766-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004547supercontigsc0004547:3386..3934 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618576	0	0.167946	0.136107	2.90528	2.00153	2.8756	2.35152	1.72638	7.02513	1.72995	0.519501	1.78134	1.43342	0.410248	0.657701	0.522584	0.759725	1.6887	1.93435	0.148481	0.319804	0	0.754251	1.10106	3.85262	0.64302	0.305397	0	0.211612
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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