TCONS_00043136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043136
Unique NameTCONS_00043136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043136 ID=TCONS_00043136|Name=TCONS_00043136|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CTGGCTTGGACTGACtggaaattgttttttaaattccaTTACTGGATAAC
CCTTTTCTTTGCTCCTCTCATTGCTCTACTTTACGATAATATCTCACAAA
ACACAAATCCATGGCTACTTCCTCCTCTGAAACTGAAATTGGCCTTGGTC
AAAAGCGTAAGTCCACTTCAATATTGCTGTTGTCAGGTCTCGGTCAGAAG
TGTAGTCGTGGAACTGGTACTTGTGATAAGTGTTCTAAACAATACACTAA
TCGTTCTAAGCCCAAATTTTGCCAATGTGGAGCTCATCTTGGTGGAATGT
TTGTTGctaaaccaaaaaaaaacagaaccaGAGCCTGAGCTTGTGGAAAT
AGTTAACATTTCATCTGTTGGCACATTTATGTCTGCAAAGGTGTCAGTGG
CTGGAGACCGTGCTTTTTGTTTTATATCCACAGACAACTTATCTGTCTGC
CACAGCAAAACCTGCCTCAAGTTAAGGTCAAGCTATGTTTCTTCCAACAA
AGTAGAGGAATTTACCTGTGAACATTTACGCAAAATGCCAGCAAGACAAC
CAGTAAAAGTGTTtcacaaatttgatgaaatagaCATCAATATGATAAAT
TTCTCTTTGGATATCAAGAATAAGATCAAAGAATTGCAAACCTCTATGGA
AGTCTACCCATCTGTAGTTCAAATAAGTAGCAAAGCCTATGCAGTCAAAA
CTATGGAGAACAAAACTTCTTGCCCAATGAAGTATGTTCATGTCatgata
aaaaataacaagaagACCAATAAGAATATGGTGAAGTGCACCCAGCGAAg
ctgtaataaaaaaattacaaagacaAAACagGACTATTCAATGTGTGTAA
CAAGATAATCATTTCATTGGATATATTAAATGAATGGAGAAGTGAATTCA
AGCGAGGGTTGAAAGTAAAATGGAATCTCTACTGAGCAGATTAGATACGT
CAGCTCATCCAACCTATGGAGAATTGCAATATATTGTTGACTTACTCTAC
AATGGTTATTATGGTTTTGAAGCCCTTACCAAAAGAGATTTGAATGGTGT
TATTTGTGGACTTAGTGGAATTGCAGGGAAGATTTATTATGGTgatggaa
atgaaaaaaattgttgtaCTATGATGAATatcaATATCAAGGAAAGCTCA
AAAAATGCCCCAACTCAAGAAACCC
Run BLAST on NCBI

transcript from alignment at sc0003951:2918..8878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043136 ID=TCONS_00043136|Name=TCONS_00043136|organism=Clytia hemisphaerica|type=transcript|length=5961bp|location=Sequence derived from alignment at sc0003951:2918..8878- (Clytia hemisphaerica)
CTGGCTTGGACTGACTGGAAATTGTTTTTTAAATTCCATTACTGGATAAC
CCTTTTCTTTGCTCCTCTCATTGCTCTACTTTACGATAATATCTCACAAA
ACACAAATCCATGGCTACTTCCTCCTCTGAAACTGAAATTGGCCTTGGTC
AAAAGCGTAAGTCCACTTCAATATTGCTGTTGTCAGGTCTCGGTCAGAAG
TGTAGTCGTGGAACTGGTACTTGTGATAAGTGTTCTAAACAATACACTAA
TCGTTCTAAGCCCAAATTTTGCCAATGTGGAGCTCATCTTGGTGGAATGT
TTGTTGCTAAACCAAAAAAAAACAGAACCAGAGCCTGAGCTTGTGGAAAT
AGTTAACATTTCATCTGTTGGCACATTTATGTCTGCAAAGGTGTCAGTGG
CTGGAGACCGTGCTTTTTGTTTTATATCCACAGACAACTTATCTGTCTGC
CACAGCAAAACCTGCCTCAAGTTAAGGTCAAGCTATGTTTCTTCCAACAA
AGTAGAGGAATTTACCTGTGAACATTTACGCAAAATGCCAGCAAGACAAC
CAGTAAAAGTGTTTCACAAATTTGATGAAATAGACATCAATATGATAAAT
TTCTCTTTGGATATCAAGAATAAGATCAAAGAATTGCAAACCTCTATGGA
AGTCTACCCATCTGTAGTTCAAATAAGTAGCAAAGCCTATGCAGTCAAAA
CTATGGAGAACAAAACTTCTTGCCCAATGAAGTATGTTCATGTCATGATA
AAAAATAACAAGAAGACCAATAAGAATATGGTGAAGTGCACCCAGCGAAG
CTGTAATAAAAAAATTACAAAGACAAAACAGGTATCATTTTTAATTTTTT
TTCAAACCAATTTTAGTTTAGACTAGATGGATAGGCCATTCTTTAAAAAT
TGCTTGGTTCCCGTCATCTCAACTTTTAAAAAGTGGGTCGGACGGTCGAT
AAAAAAAATGTGTTCAAAAGATATGAAGAGGGGAGTCGGGCGGGATTAAA
AAATGAGCGTTTATGTCCTCTTCCGCCATCTTGTTGAACCTACCTGGAGG
TCCTATAAATTAACCTGTGTTTGTTTGTTTGTTCGCCTGTTACCTTTTCT
GTTAACTTTTCGCAGGATTGAATCTAGGAATCTTTTCAGTTTTGGTACGA
ATGTGCGAAATGGCGGTGGGCAAAATGTGACGGAGCTCAATTTTCAAAAA
AAATTTTTTGGCAAATTTGGGCCAAAAACCTGCTAAAAATAGGGTTTTAT
GCACTTTGTGAAAAATTAGATCAAAAAACGCATGTTTGTCAATAAGAATC
ACTATTAATAAGCATACATCAAAGTTCTTAGCCAATTAGTCAATTTTTTT
TATGAGATAGATGTTGTTTTGCTGATGATTGCTTACTTTTGAAGAATATT
TTGTGTTTAAACTTGAAATTTTGGCTGCTAAACGTGTTTTTATAGAAAAA
TTAGCCAAATTAGATATTCTTTTATAAGTACATTGACAATTATTTAGTCA
TTACAGTAACTTCTCTTGAGATTGGTTATTTCATCTTTTATTATTTTTTG
CACAGAGCTGCATAACTATAAATCCTCCAATGTGACAGATTTTCGTAAAA
AAATTTTTTGGTTTAAATTTCGGCTAAAAAGAGGGTTTATTGGTCTTTGT
GAAATATTGGATCATTAATTTTTTTGCATGAAAGTAGGGTACCATCATAT
ATCATAATATTTTAACAAAAATAACTTTGTTTATTCAAACAATCTAACAT
AACTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGAAAGTAAAATGGAATCTCTACTGAGCAGAT
TAGATACGGTATTTCAATATTTCAAGAAATTCAATTCTGGAAATAGTAAA
TGTTTGTTTTGAATTACCCAAGTAAGCTCTCAGCATTCTCTCCTATCACT
TGTTCTGCTCCTACACAAACCACAAAAAATGTAAAGAAAATGTAGAAGCA
GGAATCAAGAGCCACCCAGTCTGATCCAGTAAAGTGCCAAGAAAATTGAA
AAGGTTCAGGCTGAAAAAAAAGAAATTAAGTGTCTGAGAGTTTCTCTTCT
TATATTTTCCAGTCAGCTCATCCAACCTATGGTAACCTGATAACAGATGT
TTGTAATTTTCTTACGCGCACGGTAAACCTCTGAAGGCGCTTGAAAATTG
TTTTCACACATCCCTTTAGAGCTTCAGCGTGGTGTGCAGAAAACATTCAC
AATCTGATCTCAGGTTAACCTATGGAGAATTGCAATATATTGTNCTGCTA
AGAAAATTGAAAAGTTTCAGGCTGAAAAAAAGAAATCAAGTGTCTGAGAG
TTTCTCTTCTTATATTTTCCAGTCAGCTCATCCAACCTATGGAGAATTGC
AATATATTGTTGAGTTACTCTACAATGGTTATTATGGTTTTGAAGCCCTT
ACCAAAAGAGATTTGAATGATGTTATTTGTGGACTTTGTGGAATTGCAGG
GAAGATTTATTATGGTGATGGAAAGGAAAAAAAAGTTGTACTATGATGAA
TGTAAGTAGAATTAATTAGGTTCTAAAAAATCTAAGTTATTAAATTTTGT
GTTCCTGGTTTCACATCAGATATGTCTGCCCTTTTGTTACCTATGTTATC
AACTAAAAAAAGTGAAAATATTGAAATATTGATTCTAGAGCAAAAAACCT
TCCTGTTGCTCAAAAGTAAATTTAGAAGGAGGAAAGGATTTTTGAGAACA
ATCAGAAAGAGAGGAGTTCTTTCCTTTGTAACCTAGTTGATTAAGCAAGC
ATAAAAAGAAATAAAGGCCTGTTCTATGGATCACTCCATTGTACATCTTT
CGATTTTTTCAATTCCCTGAACTTTATTTTTGACCTATTTCTGCAGTCTT
AATAATACACTCCTAACAATACTATACCGCTTCTGTTTTAAAGAAGGGGA
AATCATTGCTGTCTATTATTAGGAAAGTATGTATCCAAGAGGGAAGTATT
TTTAATTTTTAGATCAATATCAAAGAAAGCTAAAAAAATGCCCCAACTCA
AGAAATNAATTTTTAGATCAATATCAAGGAAAGCTCAAAAAATGCCCCAA
CTCAAGAAACCCAGGTCCAGGATATTGAGGAGGATGCTGTATCAGAGAAT
GATGAAAGTAAACTTGATTTGTGTTTGGATCGCATTGAAAATCAACTGAT
AGAGAGGTGTATTTATGTTTCAAAAAGAAATGAAACACTTACAATGAATA
TTGAGGATGTCCCCCTTCTTATACCATCATTACAAAGGAAGCAGGAACTG
AATACAGAGATGAAAAAAAAGCTGCTATCTGAAAGATACTGATAAAATTG
ANAGCAGCTGGAATTTGACAAACTTGTGAAGCCATGTAGCTATGATTGTA
TTTTTCTAGGACTATTCAATGTGTGTAACAAGATAATCATTTCATTGGAT
ATATTAAATGAATGGAGAAGTGAATTCAAGCGAGGGTTGAAAGTAAAATG
GAATCTCTACTGAGCAGATTAGATACGGTATTTCAATATTTCAAGAAATT
CAATTCTGGAAATAGTTAATGTTTGTTTTGAATTACCCAAGTAAGCTCCC
AGTATTCTCTCCTATCACTTGTTTTGCTCCTACACAAACCACAAAAAAAT
ATAAAGAAAATGTAGAAGCAGGAATCAAGAGCCACCCAGTCTGACCCAGT
AAAGTGCTAAGAAAATTGAAAAGGTTCAGGCTGAAAAAAAGAAATCAAGT
GTCTGAGAGTTTCTCTTCTTATATTTTCCAGTCAGCTCATCCAACCTATG
GAGAATTGCAATATATTGTTGACTTACTCTACAATGGTTATTATGGTTTT
GAAGCCCTTACCAAAAGAGATTTGAATGGTGTTATTTGTGGACTTAGTGG
AATTGCAGGGAAGATTTATTATGGTGATGGAAATGAAAAAAATTGTTGTA
CTATGATGAATGTAAGTAGAATTAATTAGGTTCTAAAAAATCTAAGTTAT
TAAATTTTGTGTTGCTGGTTTCACATCAGATATGTCTGCCCTTTTGTTAC
CTATGTTATCAACTAAAAAAAGTGAAAATCTTGATTCAAGAGCGCAAAAC
CTTTCTGTTGCTCAAAAGTAAATTTAGAAGGAGGAAAGGATTTTTTGAGA
ACAATCAGAAAGAGAGCAGTTCTTTCCTTTGTAACCTATTTGATTGAGCA
AGCATAAAAAGAAATAAAGGCCTGTTCTATGGAACACTCCATTGTACATC
TTTCGATTTTTTCAATTCTCTAAACTTTATTTTTGCCCTACTTCTGCAGT
CTTAATAATACACTCCTAACAATACTCTACAGCTTCTGTTTTATAGAAGG
GGAAATCATTGCTGTCTATCATTAGGAAAGTATGTATCCAAGAGGGAAGT
ATTTTTAATTTTTAGATCAATATCAAGGAAAGCTCAAAAAATGCCCCAAC
TCAAGAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026863XLOC_026863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043136-exon-sc0003951-1575043694:8048..8878TCONS_00043136-exon-sc0003951-1575043694:8048..8878Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1575043694:3852..3969TCONS_00043136-exon-sc0003951-1575043694:3852..3969Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1575043694:3418..3597TCONS_00043136-exon-sc0003951-1575043694:3418..3597Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1575043694:2918..2963TCONS_00043136-exon-sc0003951-1575043694:2918..2963Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1510915933:8048..8878TCONS_00043136-exon-sc0003951-1510915933:8048..8878Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1510915933:3852..3969TCONS_00043136-exon-sc0003951-1510915933:3852..3969Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1510915933:3418..3597TCONS_00043136-exon-sc0003951-1510915933:3418..3597Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1510915933:2918..2963TCONS_00043136-exon-sc0003951-1510915933:2918..2963Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1491911889:8048..8878TCONS_00043136-exon-sc0003951-1491911889:8048..8878Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1491911889:3852..3969TCONS_00043136-exon-sc0003951-1491911889:3852..3969Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1491911889:3418..3597TCONS_00043136-exon-sc0003951-1491911889:3418..3597Clytia hemisphaericaexon
TCONS_00043136-exon-sc0003951-1491911889:2918..2963TCONS_00043136-exon-sc0003951-1491911889:2918..2963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003951supercontigsc0003951:2918..8878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0359845	0	0.914474	2.01218	1.61032	2.95843	1.56544	0	1.63648	1.0007	0	0.000939084	0	0	0	0	0	0.163653	0	0	0	0	0	1.59554	0.250585	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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