TCONS_00043099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043099
Unique NameTCONS_00043099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043099 ID=TCONS_00043099|Name=TCONS_00043099|organism=Clytia hemisphaerica|type=transcript|length=830bp
AGACGATCAACCACCAAGGAATACAATAGAATATACTAAAAGACGATCGA
TTACCAAAATAAACGCCGGTCATTGGAGATTGACGCTTATCAACATTCAA
CACCGACAAATTATCAAACATGGAATCGTGGATGTGTTTTATCAAAGTGA
TGAATTTGGTATTCCTTAAACGAAAATTACAAAtagattgataacatttt
gaAGCTATGAAACTCATACCTCGTAAAAATCCATTATTATAATAATTGTA
ATTTAAATTTATGATCTCTTACATTTGACGGTCAAACACTTGCAGATGGA
ATAATTTCGTTagtaaaaaaattgtacataaaGGGAGGAAGACCTTTAAC
CTCCGAAGGTCNataataattataatttaaatttatgaTCTCTTACATTT
GACGGTCAAACACTTGCAGATGGAATAATTTCGTTAGTAAAAAATTTGTA
CATAAAGGGAGGAAGACCTTTAACCTCCGAAGGTCGGGGTGACGGATGCC
ATTGATTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTTT
TACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAGTTTA
TCCAACTTATAATAATTTTACTACCGattttgttaaacattttttttacc
GCGAGTGTTAATGCAAGCAAATACCAAACAATAAGTAgaaacaactttcg
ttttttattgtttgtttcattTCGAAAAGGAGAAATAGTGGAGaaccatc
tttttctaaatactttcgcaatattatcgaaatccagataatccgttttt
attaaatcggaatagataatcggattagat
Run BLAST on NCBI

transcript from alignment at sc0003916:9065..9894+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043099 ID=TCONS_00043099|Name=TCONS_00043099|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0003916:9065..9894+ (Clytia hemisphaerica)
AGACGATCAACCACCAAGGAATACAATAGAATATACTAAAAGACGATCGA
TTACCAAAATAAACGCCGGTCATTGGAGATTGACGCTTATCAACATTCAA
CACCGACAAATTATCAAACATGGAATCGTGGATGTGTTTTATCAAAGTGA
TGAATTTGGTATTCCTTAAACGAAAATTACAAAtagattgataacatttt
gaAGCTATGAAACTCATACCTCGTAAAAATCCATTATTATAATAATTGTA
ATTTAAATTTATGATCTCTTACATTTGACGGTCAAACACTTGCAGATGGA
ATAATTTCGTTagtaaaaaaattgtacataaaGGGAGGAAGACCTTTAAC
CTCCGAAGGTCNataataattataatttaaatttatgaTCTCTTACATTT
GACGGTCAAACACTTGCAGATGGAATAATTTCGTTAGTAAAAAATTTGTA
CATAAAGGGAGGAAGACCTTTAACCTCCGAAGGTCGGGGTGACGGATGCC
ATTGATTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTTT
TACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAGTTTA
TCCAACTTATAATAATTTTACTACCGattttgttaaacattttttttacc
GCGAGTGTTAATGCAAGCAAATACCAAACAATAAGTAgaaacaactttcg
ttttttattgtttgtttcattTCGAAAAGGAGAAATAGTGGAGaaccatc
tttttctaaatactttcgcaatattatcgaaatccagataatccgttttt
attaaatcggaatagataatcggattagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026832XLOC_026832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043099-exon-sc0003916-1491911889:9065..9894TCONS_00043099-exon-sc0003916-1491911889:9065..9894Clytia hemisphaericaexon
TCONS_00043099-exon-sc0003916-1510915933:9065..9894TCONS_00043099-exon-sc0003916-1510915933:9065..9894Clytia hemisphaericaexon
TCONS_00043099-exon-sc0003916-1575043694:9065..9894TCONS_00043099-exon-sc0003916-1575043694:9065..9894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003916supercontigsc0003916:9065..9894 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.2056	25.8756	12.2854	6.7341	0.325196	0.151141	0.575868	0.301267	1.17077	1.47586	1.3942	1.90858	14.0505	14.2506	11.6118	8.25262	3.80855	3.9137	1.45408	1.4814	1.27274	1.88888	20.9286	17.195	0.671107	0.184106	15.0822	17.0467	13.5472	10.2596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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