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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043096 ID=TCONS_00043096|Name=TCONS_00043096|organism=Clytia hemisphaerica|type=transcript|length=5038bp
CTCcgataaaactaaaaaaatacacaacaagcaaatttcaaaattaattt
ttttaataaaaatttgtttcattttgttaCTGATGATATGATGAAATGGT
AAAAATTCGTTATCATTATATCAGAAAGCTTTACAAGAAACAATTGAATA
AATATCTACTAAGAACTATAATAATCTTActtatgaaataaaaaagtttt
aattttgaaaaaaaatgtcacGGTATTATCATCATAAGAACAAAAATGAT
ACAGCATATCAAAacatagtctacacaatagacagatccaggcttttagg
ccttactcttctacgaagagtaggagttttacgctcgaaacgaaggaaga
tatgacgtagcctaatcAAAACACCGATCACCAACGTCAGTTATGAATAT
TTCCTCATGAATTAGACTTCGGAGGCTTCCACactgaagccacttatttc
ccatccagaacgcgcctaaaacgcaccgcaatcatgacgacggattgtat
ctagcggttcctttgtttttgaggactgcgttttttgaaaactagcgatg
gattttactttcaatccggcgtttgtgatAAAACCATGGACAGGCGTTCT
GGATGAGTAATAAGTggctttatttcccatccaggagtctcgagtttagc
ccttcgggcttggaagtcaatggcaTTATGTGCTCGGAAAAGTGATTGCG
AAGTTTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTT
CGCACGCTAATTACTTTTGCATGCGTTTCATTACGTCATAATGAGAAGCA
TGCGCTGTGAAAACGTTTTAAATAGGGCGTTTGAATTACAAACATCCTCG
CTGCATTCACTCATCAAACTAAGCGTACTTGTGTATGTGTgtgtaagaaa
aaaaaattctttttaaaaaatgtctaaaaaatcAAGTGAGAAATCAAAAT
CTACTGACGGTGGAACTACTGCTGGAAATGAAACACTAGCTGTTACTTAC
GAGCAGTTGAAAACTCTAGTTAATGATGTTGTTGAAAAAGACTTTGGCCC
ACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGTACAAT
CTGCTGAGAATCAGTTGACCAATCTGGCCAAGCTCAAAAAGAAACTCGAA
AAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACTGGCCATCAAGA
TCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTCG
AATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCTTTGAATAAA
GGTAAGAGATTACTAGAGACTCGTATTCAACATATTAGAATCGCCGACAC
ATATGGGTGGCTTACTGTCAACGAATTTAAGGCAAGCGATCTTACATCCG
GAGACGTGGAGGAAAAGAGGCTTAAGAGGGCTATTAAAAATGCAGAGCAA
GTTAAAGAACGTATATATAAAAAGCCAAGAATAGAGGAACCTGATGGAGA
ATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGCCGTATGGATG
AGGTGGTCTGTTATTCATGCAAAAGAGTAGGGCACTACGTCAGCCACTGT
CCTTTTTTTGAATCTTCGTCACCTTTGGCCCACTCGATAAAGTTAATGTC
CTCACCAACAGCAACAAAAAGTTCGTCGTCCAATTCAAATTCTAAATCGT
CAAGGGATGGAAAATAACTTTAAcaaaaaatagaagattttcaGATATTC
AGAACNCCACTCGACAAAGTTAATGTCCTCACCAACAGCAACAAAAAGTT
CGTCGTCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAATAACTTTAA
caaaaaatagaagattttcaGATATTCAGaacaattttttcaacttttga
aatacagtagCTAATTTACGTTGCgttagttttaaaaattgattaCAATT
TTGCCTTGTTGTAATTAGATTAGTATTAATGAGAGCTAATGATATAAACG
TACCTGATCTTCTATTCTATTTCAACTGTGCCATTTTACCTTCTTTAATA
ATAAATGTCAAAAATGGATGATGCAACAAATTATCAAAACTTCTCTCCTT
CGTTTTGCTAATTTACCTCACTGGGATAAAAGACGATTAATAAATTTTGA
CGTTATTCAAGAACTTCAATTTTGGCAACCCAATTTATAAAACGTAAAAG
CTTTTAGAATTAAAACTAAACCAAGAATTACGAAGGTCATCTTTTCGGAC
ACAAGTGGTACAGGCTATGGAGGTTACGCGGTAGAAAAGTTAGGAAACAC
CATAGCAAAAGGAAATTTTGGTAGACATGAAATACAACTAGCTCAACTTG
TCGTGAACTTCTCGCAGTTAAATATTTTTGACGTCCTTTCCAAACTTCTC
GAAAACGAAATAATTGAGTGGTTCACGGACAACGATGTTTGTAAAATAAT
CAGCCGCGGTAGCACAAAACAACACCTACAAAATcttgcaatagaaattt
ttcaacatcTGCTTATCTCATAACGTCGGAATTTACCCTACTTGGATACC
AAGGGACATGAATAAAACAGCAGATTTAATTTCCAAATCTACCGACACAG
ATAATTGGTCTATCGATAATGAGATTTTTAATTATATAATCAAGCTATGG
ACAAATTACTATCGATCGAATTTCCAATAACCAAAACGCTAAAGCAACTG
TTCTCGTGAGTATTACCCAGGAACATCTGCCGTCAACGCTGTTTCCTATT
CAACACAAAATGTATAACTGACGGATTTGCAGGCTTCTATTCTGTAACat
catttttctttccttttatgTTGACAAACTTGGTGACTACATTCGCAAGA
TTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTGTCAATG
CCTCTGTGCAAACACGTCTTTTGCGTCAATGTCTCTGTACAAACGCATTT
GAGGGGTTCGTTCTCCATCTTGAAGCCCATCGTCTTACAGATGGCAAAGT
GCAAAGGTACGAAATTTActatttttcttatttcaattttcgacAGATCA
TGACCcccaaaatttgaaagaaaaactcgCAACAATATTAAAGATAAAAC
TGAAATccgattcaaaatttttcaatcattgggaatttaactttaaattt
attttttttgctacTATATTATGTACAACTCAtaacttctttctttttta
tctctCGTGTTATTGCAGACAAATACCAAACAAAGTAGCTATTATTGTGA
TTTATTGTTTGTTCATTCGGGGAAGGAGAAATAGCCGAGAAGCGAAGTTT
CCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTTCGCACG
CTAATTACTTTTGCATGCGTATCATTACGTCATAATGAGAAGCATGCGCT
GTGAAAACGTTTTAAATAGGGCGTTTGAATTACAAACATCCTCGCTGCAT
TCACTCATCAAACTAAGCGTACTTAAACAAAATGCTGTCCAATTTACTAG
GTTTTGCAGGATTTTTTAGAATTAGCGAAATCCTTCAAATTCAGATAAAG
GAAATCACTTTTGACAACTTCGGTGCAACAGTTTTACTACCAAAGTCAAA
AACCGACCAAGTTCGTGAAGGTAATATCGTTTTCATTAGCAAGACAGGAA
CAAAATGCTGTCCAATTTACTGGCTTCGCAAATATTTGTCACTATCCAAA
TTAAATTACAAACCCGAGGCTTACCTATTTTGTCATCGTTACAAATCAAA
GCAGGTTCTCAACAATTTCGCACGGAAAATTAATTATGCATGCGCATCAT
TAAGTGATAATTATGATTCGTATGTCTttaaatacaattcaaaattcTAA
ACCATCCTCGCTATTGCATTCactcaaaatcattttcacatACTTTAGCA
AACTTTTCcgaaatttccagattttctcGTACTATATTTAATCATAAGCC
CCTGTATACTCCGGTCAacctttctttatttttatgacATTGGAACAATC
GGACAAGAGCTTCTTCCTGGACTTCAAACAGATGATCAATCAATGGCTCA
GACGATCAACCACCAAGGAATACAATAGAATATACTAAGACTATCGATTA
CCAAAACAAACGCCGGTCATTAGAGATTAACGATCTTATCAACATTCACC
ACCGACAACTTATCAAACATGGAATCGTGGATGTGTTTTATCAAGTTGAT
GAATTTGGTATTTCTTAAACGAAAATTACTAAtagattgataacattttg
aAGCTATGAAGCTCATACCTCGTAAAAATCCATTACAATAATTATAATTC
AAATTTATGATCTCTTACATTTGAGGGTCAAACACTTGCAGATGAAATAA
TTTCGTTAGTAAAAAATTTGTACATAAAGGGGGAAGACCTTTAACCTCCG
AAGGTCGGGGTGACGGACGCCATTGGTTCGGAGATAATGTTTCCTCCAGA
ATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGTCACAAAAATTCA
GGTGTATTTTATTTGAGTTTATCCAACTTGtaattttacNCTCATACCTC
GTAAAAATCCattattataataattataatttaaatttatgaTCTCTTAC
ATTTGACGGTCAAACACTTGCAGATGGAATATTTTCGTTAGTAAAAAATT
TGTACATAAAGGGAGGCAGACCTTTAACCTCCGAAGGTCGAGGTGACGGA
TGCCATTGGTTAGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGG
GTTTTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAG
TTTATCCAACTTGTNNNNNNNNNNNNTTTCCTCCAGAATAAACAGCCACT
GGGGGTTTTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATT
TGAGTTTATCCAACTTGTAATTTTACTACCGattttgttaaacatttttt
ttaccGCGAGTGTTAATGCAAGCAAATACCAAACAAAAAGTAGAAACAac
tatctttttttattgtttgtttcattTCGAAAAGGAGA Run BLAST on NCBI transcript from alignment at sc0003916:3603..8640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043096 ID=TCONS_00043096|Name=TCONS_00043096|organism=Clytia hemisphaerica|type=transcript|length=5038bp|location=Sequence derived from alignment at sc0003916:3603..8640+ (Clytia hemisphaerica)
CTCcgataaaactaaaaaaatacacaacaagcaaatttcaaaattaattt
ttttaataaaaatttgtttcattttgttaCTGATGATATGATGAAATGGT
AAAAATTCGTTATCATTATATCAGAAAGCTTTACAAGAAACAATTGAATA
AATATCTACTAAGAACTATAATAATCTTActtatgaaataaaaaagtttt
aattttgaaaaaaaatgtcacGGTATTATCATCATAAGAACAAAAATGAT
ACAGCATATCAAAacatagtctacacaatagacagatccaggcttttagg
ccttactcttctacgaagagtaggagttttacgctcgaaacgaaggaaga
tatgacgtagcctaatcAAAACACCGATCACCAACGTCAGTTATGAATAT
TTCCTCATGAATTAGACTTCGGAGGCTTCCACactgaagccacttatttc
ccatccagaacgcgcctaaaacgcaccgcaatcatgacgacggattgtat
ctagcggttcctttgtttttgaggactgcgttttttgaaaactagcgatg
gattttactttcaatccggcgtttgtgatAAAACCATGGACAGGCGTTCT
GGATGAGTAATAAGTggctttatttcccatccaggagtctcgagtttagc
ccttcgggcttggaagtcaatggcaTTATGTGCTCGGAAAAGTGATTGCG
AAGTTTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTT
CGCACGCTAATTACTTTTGCATGCGTTTCATTACGTCATAATGAGAAGCA
TGCGCTGTGAAAACGTTTTAAATAGGGCGTTTGAATTACAAACATCCTCG
CTGCATTCACTCATCAAACTAAGCGTACTTGTGTATGTGTgtgtaagaaa
aaaaaattctttttaaaaaatgtctaaaaaatcAAGTGAGAAATCAAAAT
CTACTGACGGTGGAACTACTGCTGGAAATGAAACACTAGCTGTTACTTAC
GAGCAGTTGAAAACTCTAGTTAATGATGTTGTTGAAAAAGACTTTGGCCC
ACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGTACAAT
CTGCTGAGAATCAGTTGACCAATCTGGCCAAGCTCAAAAAGAAACTCGAA
AAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACTGGCCATCAAGA
TCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTCG
AATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCTTTGAATAAA
GGTAAGAGATTACTAGAGACTCGTATTCAACATATTAGAATCGCCGACAC
ATATGGGTGGCTTACTGTCAACGAATTTAAGGCAAGCGATCTTACATCCG
GAGACGTGGAGGAAAAGAGGCTTAAGAGGGCTATTAAAAATGCAGAGCAA
GTTAAAGAACGTATATATAAAAAGCCAAGAATAGAGGAACCTGATGGAGA
ATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGCCGTATGGATG
AGGTGGTCTGTTATTCATGCAAAAGAGTAGGGCACTACGTCAGCCACTGT
CCTTTTTTTGAATCTTCGTCACCTTTGGCCCACTCGATAAAGTTAATGTC
CTCACCAACAGCAACAAAAAGTTCGTCGTCCAATTCAAATTCTAAATCGT
CAAGGGATGGAAAATAACTTTAAcaaaaaatagaagattttcaGATATTC
AGAACNCCACTCGACAAAGTTAATGTCCTCACCAACAGCAACAAAAAGTT
CGTCGTCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAATAACTTTAA
caaaaaatagaagattttcaGATATTCAGaacaattttttcaacttttga
aatacagtagCTAATTTACGTTGCgttagttttaaaaattgattaCAATT
TTGCCTTGTTGTAATTAGATTAGTATTAATGAGAGCTAATGATATAAACG
TACCTGATCTTCTATTCTATTTCAACTGTGCCATTTTACCTTCTTTAATA
ATAAATGTCAAAAATGGATGATGCAACAAATTATCAAAACTTCTCTCCTT
CGTTTTGCTAATTTACCTCACTGGGATAAAAGACGATTAATAAATTTTGA
CGTTATTCAAGAACTTCAATTTTGGCAACCCAATTTATAAAACGTAAAAG
CTTTTAGAATTAAAACTAAACCAAGAATTACGAAGGTCATCTTTTCGGAC
ACAAGTGGTACAGGCTATGGAGGTTACGCGGTAGAAAAGTTAGGAAACAC
CATAGCAAAAGGAAATTTTGGTAGACATGAAATACAACTAGCTCAACTTG
TCGTGAACTTCTCGCAGTTAAATATTTTTGACGTCCTTTCCAAACTTCTC
GAAAACGAAATAATTGAGTGGTTCACGGACAACGATGTTTGTAAAATAAT
CAGCCGCGGTAGCACAAAACAACACCTACAAAATcttgcaatagaaattt
ttcaacatcTGCTTATCTCATAACGTCGGAATTTACCCTACTTGGATACC
AAGGGACATGAATAAAACAGCAGATTTAATTTCCAAATCTACCGACACAG
ATAATTGGTCTATCGATAATGAGATTTTTAATTATATAATCAAGCTATGG
ACAAATTACTATCGATCGAATTTCCAATAACCAAAACGCTAAAGCAACTG
TTCTCGTGAGTATTACCCAGGAACATCTGCCGTCAACGCTGTTTCCTATT
CAACACAAAATGTATAACTGACGGATTTGCAGGCTTCTATTCTGTAACat
catttttctttccttttatgTTGACAAACTTGGTGACTACATTCGCAAGA
TTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTGTCAATG
CCTCTGTGCAAACACGTCTTTTGCGTCAATGTCTCTGTACAAACGCATTT
GAGGGGTTCGTTCTCCATCTTGAAGCCCATCGTCTTACAGATGGCAAAGT
GCAAAGGTACGAAATTTActatttttcttatttcaattttcgacAGATCA
TGACCcccaaaatttgaaagaaaaactcgCAACAATATTAAAGATAAAAC
TGAAATccgattcaaaatttttcaatcattgggaatttaactttaaattt
attttttttgctacTATATTATGTACAACTCAtaacttctttctttttta
tctctCGTGTTATTGCAGACAAATACCAAACAAAGTAGCTATTATTGTGA
TTTATTGTTTGTTCATTCGGGGAAGGAGAAATAGCCGAGAAGCGAAGTTT
CCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTTCGCACG
CTAATTACTTTTGCATGCGTATCATTACGTCATAATGAGAAGCATGCGCT
GTGAAAACGTTTTAAATAGGGCGTTTGAATTACAAACATCCTCGCTGCAT
TCACTCATCAAACTAAGCGTACTTAAACAAAATGCTGTCCAATTTACTAG
GTTTTGCAGGATTTTTTAGAATTAGCGAAATCCTTCAAATTCAGATAAAG
GAAATCACTTTTGACAACTTCGGTGCAACAGTTTTACTACCAAAGTCAAA
AACCGACCAAGTTCGTGAAGGTAATATCGTTTTCATTAGCAAGACAGGAA
CAAAATGCTGTCCAATTTACTGGCTTCGCAAATATTTGTCACTATCCAAA
TTAAATTACAAACCCGAGGCTTACCTATTTTGTCATCGTTACAAATCAAA
GCAGGTTCTCAACAATTTCGCACGGAAAATTAATTATGCATGCGCATCAT
TAAGTGATAATTATGATTCGTATGTCTttaaatacaattcaaaattcTAA
ACCATCCTCGCTATTGCATTCactcaaaatcattttcacatACTTTAGCA
AACTTTTCcgaaatttccagattttctcGTACTATATTTAATCATAAGCC
CCTGTATACTCCGGTCAacctttctttatttttatgacATTGGAACAATC
GGACAAGAGCTTCTTCCTGGACTTCAAACAGATGATCAATCAATGGCTCA
GACGATCAACCACCAAGGAATACAATAGAATATACTAAGACTATCGATTA
CCAAAACAAACGCCGGTCATTAGAGATTAACGATCTTATCAACATTCACC
ACCGACAACTTATCAAACATGGAATCGTGGATGTGTTTTATCAAGTTGAT
GAATTTGGTATTTCTTAAACGAAAATTACTAAtagattgataacattttg
aAGCTATGAAGCTCATACCTCGTAAAAATCCATTACAATAATTATAATTC
AAATTTATGATCTCTTACATTTGAGGGTCAAACACTTGCAGATGAAATAA
TTTCGTTAGTAAAAAATTTGTACATAAAGGGGGAAGACCTTTAACCTCCG
AAGGTCGGGGTGACGGACGCCATTGGTTCGGAGATAATGTTTCCTCCAGA
ATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGTCACAAAAATTCA
GGTGTATTTTATTTGAGTTTATCCAACTTGtaattttacNCTCATACCTC
GTAAAAATCCattattataataattataatttaaatttatgaTCTCTTAC
ATTTGACGGTCAAACACTTGCAGATGGAATATTTTCGTTAGTAAAAAATT
TGTACATAAAGGGAGGCAGACCTTTAACCTCCGAAGGTCGAGGTGACGGA
TGCCATTGGTTAGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGG
GTTTTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAG
TTTATCCAACTTGTNNNNNNNNNNNNTTTCCTCCAGAATAAACAGCCACT
GGGGGTTTTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATT
TGAGTTTATCCAACTTGTAATTTTACTACCGattttgttaaacatttttt
ttaccGCGAGTGTTAATGCAAGCAAATACCAAACAAAAAGTAGAAACAac
tatctttttttattgtttgtttcattTCGAAAAGGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043096-exon-sc0003916-1491911889:3603..8640 | TCONS_00043096-exon-sc0003916-1491911889:3603..8640 | Clytia hemisphaerica | exon |
| TCONS_00043096-exon-sc0003916-1510915933:3603..8640 | TCONS_00043096-exon-sc0003916-1510915933:3603..8640 | Clytia hemisphaerica | exon |
| TCONS_00043096-exon-sc0003916-1575043694:3603..8640 | TCONS_00043096-exon-sc0003916-1575043694:3603..8640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003916 | supercontig | sc0003916:3603..8640 + |
Blast
The following BLAST results are available for this feature:
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