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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043080 ID=TCONS_00043080|Name=TCONS_00043080|organism=Clytia hemisphaerica|type=transcript|length=538bp
ATTTCTTTTGATCACTTTTCACGAAGGCTTCGAAACAGGGAATCTACACT
ATGCTGAAATATCTGTAATTATCCTGGCGATCTTTAGCAATAACTTACTA
TATCTTCGACGAGCACCACCACACTTGGCATTCAACTGTTCAGTCACCTT
AGATTCTTCCAATCCATACTTGTTCTTGCCCAattctaaaaaatcaaaac
caaatcaGCACCCAGAGACATCTTGCTGCTTGGTTGAAAGCCTGAATTGA
AACAGCACCCAGAGACATCTTGCTGCTTGGTTGAAAGCCTGAATTGAAAC
AGGTGCTGAGGCTttgattgaagatgaaaatacaaagaagaGATGGAAGT
TTATCTGGTCCATTAGCACCGTCTtggattcaaaagtataatgGTAGTCA
CAAATATCAATCAAAATTATTGGACTGAACAATTACCTTTTCGTTTTTTG
GCAACAGCTGTCACGCAAGCTTCGTAGTATTTCTTGTGATGTGGATACCA
GAAAAAACCACGTCGACCAACTTTTATCCCTGACATTG Run BLAST on NCBI transcript from alignment at sc0003905:2..7038+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043080 ID=TCONS_00043080|Name=TCONS_00043080|organism=Clytia hemisphaerica|type=transcript|length=7037bp|location=Sequence derived from alignment at sc0003905:2..7038+ (Clytia hemisphaerica)
ATTTCTTTTGATCACTTTTCACGAAGGCTTCGAAACAGGGAATCTACACT
ATGCTGAAATATCTGTAATTATCCTGGCGATCTTTAGCAATAACTTACTA
TATCTTCGACGAGCACCACCACACTTGGCATTCAACTGTTCAGTCACCTT
AGATTCTTCCAATCCATACTTGTTCTTGCCCAattctaaaaaatcaaaac
caaatcaGGTTAGTTATAAACTTCTTCATTTCTATTTGTACTGTTTGCGA
GAGCAAGGAAAAATCGTTCTTTGCTGTATGTTTCTCAAAGCTCATAAAGT
GTACACTTCAAAAACTTTCATATTAAAAAAGGTGGATAAATTAATTAGAA
AAACAGCTTTATAAAGTGTACGTAGATTATCCCTTTTCCCCCATGCATGC
CTGTATGCGTTACCAAGCATCCTCTCTCAGAGTTAAGAACTTTCTGGTAC
TTTTTGAATGATGTCTCCGCAAATATAAGTTCTTGactgaatatttttaa
tttttccactATATACCGACAGAAATCAAATTTcgccaaattcaattttt
tccctgaatgtatCAAGAAAGTtaaccttaagggaactttttttggtgag
aactaattttgacaaACGACCGATTCTAACTTTTCtcttttggcgagaac
ttattttggcaaaccaggaattttttgattttggcaagaacttaatttgg
caaatgacctaaaaaataatttcagtgggaactaaatttggcaaattttg
agtTCGCTctccaattttgccaaaataagtaTGGTAATATGAAGAAAGAT
AAAGAAGTCTTATTCTACTTACCTAAAAGATCAGCaacaattttttcatt
caatgcTGGCTTTGACTTTCTAGTCTTTTTGTTTTCCTTGCCTTGTGCTG
ACGACCTTAAAGTTTTAAGTGGAACATTTagcgctttctttgttttactA
ATTCCGAAGCTAGAAAATATTAATAGAGGCATATCGTCTGAAGCcaggta
acaaaaattttctggaatggcccaatgtNAAAATGCATATCGTCTGACGC
caggtaacaaaaattttctggaatggcccaatgtgaCAAAAAACAAGAAT
AAATGTTTCCTTGTTTGACTTGTAACAGAGTTAAACTGGAAGAGtctatt
ttttataaagaaGAAATTGTTTTCTTACTTCCTCAAAGTTTTCTCGTCAA
AGTATTTCTTGACGATGGTATTGAAAACCGGTGTCCATTTTTGGTATTTG
TCGCTCTTCCTTTTCAACACCTTTATTTCTGCCACCGTCAACTTAACATG
GTTAGTCATTGGGAGTATCATTTCTTGCTAAAGGtttgtaaaattatgaa
aataaaactgTAGTTAGACTGAGTGCATGGTTCCGGTAAGTGTTTAAGat
accttaaggggattaatttttgcgggaacttattttcgcgagagatataa
aaattaaaatttaacaaATCAGCCcctttttgaccaaatttctttcattt
tcgtAGGGGTTCAGGCAAATATCATGATCTTAAATTTTTCGCAAGTATTA
TATTTTGCGAATTTCGCAAATCCaaaggttttaaaattttttaatcaaat
caagGTACTTAAGGAGGATCTAATATTTTCGTGAGAAATAAACTTTTACT
GGTACCTACCTGCATATCTGAATTGCTAAGATAACCGGTGCTGAcgtcta
atgtttttttttgttttctgtcGGTTGTTATTGGACTACTCTCAAAGTTC
ATACTTCTGTCCGTCATTACAGGAGTTGAGTTCATCTATATAGAAAATAA
CAAAGTTTTCAGTTTCTTATATACACATTCAAGTAATTTTTTCTTGCTGC
TGGTGCtgtttttaaccctttaaaaACAGATGTATGTAGGGTTAAAACTC
TAATTTTCCACCAATTTAATCCTAAGTATACTTTGAACTCAGCCATTACA
GGCTCCActttaagaatttttcagccTCGTTGTTTTCGTAAAGAAagttt
attttagatattctcACTTTATGAAAATTTCTCTCCTAAATTTATCACTT
AACCAACTTTAATAGATACACTACTCACTTGGTCTGTTCCAGGAAGCACT
TCCTCATGCTGGTCAAGGGTCATACTCTCAGGAATAATCTATGAGAAAAG
GATATTCTTATTCTTACAAGTCCTTATAAAACTTGCTTTCATTAAAGCTT
TTTTCTTGACAGGGTATGAGCTGAATTTCCTAATTTGATAacggtgtttt
ttttaattattatttacAAGTGCATTTTAATTGAGTTATTAATAAGATGT
GAGTATATAGTGGCAAATTCAACTTACTGTGGTTTTTTTGCCATTTGGGA
AGGAATGGCTGATTTGTTGCGTGACTGTCACTAAATCAGGAACTAGCCTG
CCCAAATTACTGAAAGTTGACTCTAAGAGAAAAGAGGTTATGGTGAACAA
CAAGGCTGGGTGTTGTGTGGAGGTATCTAGGGTCTTTAAAGAGTAACATG
GTCACATATTTCCCCATGTCCTATTTATTCACaagctacatgttttttct
atATAAATGTTATGTTATGAGCATAcacaggctcagtttttggtttCCAa
acaattttgttttagagCAGAATTGGAAAATTTANCGTCATTACAGGAGT
TGAGTTCATCTATATAGAAAGTAACAAAGTTTTCAGTTTCTTATATACAC
ATTCAAGTAATTTTTTCTTGCTGCTGTTGCtgtttttaaccctttaaaaA
CAGATGTATGTTGGGTTAAAACTCTAATTTTCCACCAATTTAATCCTAAG
TTTACTTCAAACTCAGCCATTACAGGCTCCACTTActttaagaatttttc
agccTCGTTGTTTTCGTAAAGAAagtttattttagatattctcACTTTAT
GAAAATTTCTCTCCTAAATTTATCACNAGAGCCGCCTAAGAGAGGTTTCT
GTGTTACTCACTGATTCTAACATTgtaatgaaataaataaagaaaGACAA
CAACTTAATCGACTAAGCACTTATTTATTATGATACTAAATTAACTCGAA
AGTCTCACGCAGCCTCAATTAGAAATATATCTCACCTTCTTTATTTCCAG
CACCCAGAGACATCTTGCTGCTTGGTTGAAAGCCTGAATTGAAACAGGTA
GGACAATTTTTATAACTAtggttttttttgcttttatgtTCAGGGACcta
atttttaaaatgcagatTTGGCTTtagagaagaaagaaaaaatgtcaGAT
ATTTTCTGTTGGCAATATGCAACAATTGTATTGCTTTCTCGTACTAATTT
GCATGAAGCGAACAAAaccattcaaaaaaattttaagcttCTGAAATCAT
ACGGGTAGGTTAGGAAttaattcaaattaaaatatAGCTAACATTAAACA
CTTATTTATTATGATACTAAATTAACTCAAAAGTCTCACGCAGCCTCAAT
TAGAAATATATCTCACCTTCTTTATTTCCAGCACCCAGAGACATCTTGCT
GCTTGGTTGAAAGCCTGAATTGAAACAGGTAGGACAATTTTTATAACTAT
GgtttttttgcttttatgtTCAGGGACctaatttttaaaatgcagatTTG
GCTTtagagaagaaagaaaaaatgtcaGATATTTTCTGTTGGCAATATGC
AACAATTGTATTGCTTTCTCGTACTTATTTGCATGAAGCGAACAAAaccc
ttcaaaaaaaaattatgcttcTGAAATCATACGGGTAGGTTAGGAAttaa
ttcaaattaaaatatAGCTAACGTTTTTGCTGGTCGAATACTGGACTTTT
tgctgaaagaaaaaagttgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTGTCAGCGCTTTTTAGCTCATTGCCTTTAGATCC
CATTAATTCTAAAAACAGTTTAAAGGTAAACAATATGTCAAAATTGCAAC
TGCAACTTCTTTTATCTTATGCCCATTTTTTatgaataatattttgaaaa
aaaatcaccaaaaccaCAATATTATATATCCTGGAAGTTTTGcattgaaa
tttttaatttaattggTAGGGCAACAGCAACATGGTTGCTGATAAATAAT
TACTGGTTTATGCCTCTAACTCAAAGAGAAATGTCTTACCGTCAAAGTTT
TGGACCCAGTTGTCAAGGATGTTCTCGTTAAGCTCAAAAGATTTGTCTAA
GATTAAGATAGAAAGTAAAGTATtgttcaaaatttctgaaatgatGATCT
TAAATTTTCTTTAGCTTTAAGATTGAATTTTTAAGCTCTAGCCATGACCA
AGAACTAAACTGCTCAAGTAGTAGCCTAACCCAGACATAGATAAACCCAA
GATATTTTGAAACTTCACTGTTTTAACACATTCTGCTTACCGCCACTTTT
GTTGATGATAATAGACGAGAGTATTTCATCTGTCTTTTTGATTGCCTTTT
TTGCTGCCTTGTCTGCTTTCACTAAAAAATGGCATAAATAGGGTAGAGAg
actttgaatttttcaattggggtttgaaattattttggatCAGAGACTCC
ATAAGATTTAGGACTATATGCACAGGTTTGttaatttgatatttcaatat
ATTACTAAGTAAACTTTTGTGTGGTATACCTATTTCAGGATCTTGCTTTT
TAGTCTTTTTGACTTCCATTTTCGTGTCAGTCTTCATTACTAGGAATTGA
AAGTGATATTCTTGCTTACTTGGCTGTTTCGATTTGAAAGCGCTTTTACT
AGTTTAAAAGCTGAAAAGTTCTAatttagaaattaaaaaaatataacttt
ttaaaCTCGTTACAAACAAGCAAaacttaattccaattttaAGCAAGATG
TGCTTTTATGTGTCATTCTAGGCATTACCTTCTTCTGTAGAGGCTccttt
cttctttgtttttttagtcTTTGGTTGTGTAAGTACGTTTTCTtgagttg
aaaaagaaaaagatagtTGAAAATATGTTTATAGAATTACATGGTATTTG
TGCATTGCTCCTNcttcttctttgcttttttaGTCTTCGGTTGTGTAGGT
ACGTTTTCTtgagttgaaaaagaaaaagatagtTGAAAATATGTTTATAG
AATTACATGGTATTTGTGCATTGCTCCTTAGCAAGGGAATCAAAGATTGA
GATTTTAATTTGAAAGGTTAAGCTAGTGCCAAAGAGCTACAAACAATAAA
AAGTTTTCTAAGATGATAGAATCAATACCTTTATCAATTCCATCTAAGGT
ACAATCTTCTTTTTGTTCCGCCTGGCACTCCCGGGCCCCTgaaagatgaa
atatttttcattcttcAGTCTAGTCTTTCTCAATAGACCCTCTAGATTGA
AAATCTTACCAAATGTAAATACCACCTGGGCTTAAAGTTAAGTCCTTAGC
AGTTAAGATGTCACTTTTAATTAAACGAATGACGAATTTATCTCTTGACA
GGTGCTGAGGCTttgattgaagatgaaaatacaaagaagaGATGGAAGTT
TATCTGGTCCATTAGCACCGTCTtggattcaaaagtataatgGTAGTCAC
AAATATCAATCAAAATTATTGGACTGAACAATTACCTTTTCGTTTTTTGG
CAACAGCTGTCACGCAAGCTTCGTAGTATTTCTTGTGATGTGGATACCAG
AAAAAACCACGTCGACCAACTTTTATCCCTGACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043080-exon-sc0003905-1491911889:2..209 | TCONS_00043080-exon-sc0003905-1491911889:2..209 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1510915933:2..209 | TCONS_00043080-exon-sc0003905-1510915933:2..209 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1575043694:2..209 | TCONS_00043080-exon-sc0003905-1575043694:2..209 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1491911889:3102..3148 | TCONS_00043080-exon-sc0003905-1491911889:3102..3148 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1510915933:3102..3148 | TCONS_00043080-exon-sc0003905-1510915933:3102..3148 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1575043694:3102..3148 | TCONS_00043080-exon-sc0003905-1575043694:3102..3148 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1491911889:3483..3529 | TCONS_00043080-exon-sc0003905-1491911889:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1510915933:3483..3529 | TCONS_00043080-exon-sc0003905-1510915933:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1575043694:3483..3529 | TCONS_00043080-exon-sc0003905-1575043694:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1491911889:6803..7038 | TCONS_00043080-exon-sc0003905-1491911889:6803..7038 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1510915933:6803..7038 | TCONS_00043080-exon-sc0003905-1510915933:6803..7038 | Clytia hemisphaerica | exon |
| TCONS_00043080-exon-sc0003905-1575043694:6803..7038 | TCONS_00043080-exon-sc0003905-1575043694:6803..7038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003905 | supercontig | sc0003905:2..7038 + |
Blast
The following BLAST results are available for this feature:
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