TCONS_00043011 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043011
Unique Name	TCONS_00043011
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1030

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0003851:146..2966+
coding sequence from alignment at sc0003851:146..2966+

transcript sequence

>TCONS_00043011 ID=TCONS_00043011|Name=TCONS_00043011|organism=Clytia hemisphaerica|type=transcript|length=1030bp
GTTCTACCAAAAATGGTGAGAAATAAATAAGGAGAAATGGTATCAGAACT
GGAAGAGTTAAGAACTCTTTAAACCTTTTTGTATCATTTCAGCTATATGA
AAGTTTACAACGGGATCACGTGGTCATGAAACAAAATATGTATAAACAGG
ACGACGAGCTAAGTATGATTACTTTTTCTGAACTTGACGATAAGTGTATG
GACGTCTTTGATAAAATGGAATTGATGGAATCGGCTGCCGTCAAATTAAT
ACACAGATCATCATCTGTTGAAGACGAAGTGGTGGATGACGGGATTGATT
TGAAACATTCCGAAGAAACACTGTCAACTAATGGTGGTCATGTATTGCCA
AATGGTGGCCATCGTGTGTTGCCGAAACCGAACCTTGAAGGTCACTTTCA
AAagatGGACATCAATAAAGCGGCAAAGCAAACAGACAATAGTTTCACGA
CGTATACAACAGAAGACTTAGGAGAAATGACGACTTCAGAATTGAAAGGG
CAAGACCAGTCATCGTTCACTCTCCTCATGGAGCGAAAGGATAGTGGTAA
TGTGCAGGATGAGGAGATGTCACCGACAGCACGTTTACAGCATTTGTTGA
CAGAATCACGAAAGATGGTCAAAACATTAGAAGAATCTCCAGATCTATCA
TCTATCCATTCGTCACCAAATAACCTGTTCCTGGAGGAGGACCCATTAAA
TTGGAAAAACAACGGTAAAAGAAATTTCCACTCTGTATTAGATCTAGGTT
AATGTAGCTTAAaccaaatacacgttttttttttttaagaaacatgaggc
tcagaatgcctaaaaactaagaaacatctaagaaacatgttgaggctgag
aatgagaaaataacattttttaattaggtttttttaagaaccttcaaatc
cagcctttcataaggctgattatgtcaaaaagtttagaaacatgtaagaa
acatttaagactcaaaaggccgatttcttaagaaacattgaggctgcttg
gtagaactagttttttaaaaaaaaaaaaaa

Run BLAST on NCBI

protein sequence of TCONS_00043011-protein

>TCONS_00043011-protein ID=TCONS_00043011-protein|Name=TCONS_00043011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKQNMYKQDDELSMITFSELDDKCMDVFDKMELMESAAVKLIHRSSSVED
EVVDDGIDLKHSEETLSTNGGHVLPNGGHRVLPKPNLEGHFQKMDINKAA
KQTDNSFTTYTTEDLGEMTTSELKGQDQSSFTLLMERKDSGNVQDEEMSP
TARLQHLLTESRKMVKTLEESPDLSSIHSSPNNLFLEEDPLNWKNNGKRN
FHSVLDLG

Run BLAST on NCBI

transcript from alignment at sc0003851:146..2966+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043011 ID=TCONS_00043011|Name=TCONS_00043011|organism=Clytia hemisphaerica|type=transcript|length=2821bp|location=Sequence derived from alignment at sc0003851:146..2966+ (Clytia hemisphaerica)
GTTCTACCAAAAATGGTGAGAAATAAATAAGGAGAAATGGTATCAGAACT
GGAAGAGTTAAGAACTCTTTAAACCTTTTTGTATCATTTCAGCTATATGA
AAGTTTACAACGGGATCACGTGGTCATGAAACAAAATATGTATAAACAGG
ACGACGAGTAAGATAGTTTTTCCATTAATAATCCATTAATATAAAATGAA
TCTTAAAACAAAGTTATGATAAGACAATCTTTCGCGACCATTTTATTTCA
CTCTCGTTTTTTTCCCGTAGGCTAAGTATGATTNcaagtaaccattcaaa
tagtatttatttgacatattttgagttttgtttagaaatatttcgcggat
gaggcccttccaaatttccattgggatttaatttaatcctcgcgaaagtt
tatcccattaaagtaatgttttacgttttttaagTGTTTAGTacataaat
caaaatttctgtGATATNTAGGCTAAGTATGATTACTTTTTCTGAACTTG
ACGATAAGTGTATGGACGTCTTTGATAAAATGGAATTGATGGAATCGGCT
GCCGTCAAATTAATACACAGATCATCATCTGTTGAAGACGAAGTGGTGGA
TGACGGGATTGATTTGAAACATTCCGAAGAAACACTGTCAACTAATGGTG
GTCATGTATTGCCAAATGGTGGCCATCGTGTGTTGCCGAAACCGAACCTT
GAAGGTCACTTTCAAAaggttattttttttcaaattctagtTCTACGATT
TTAGCTCTAAAttatattttgttgaaaaaactaATTTACTGTTCGgataa
aaattagttccctaaaACTTACTGTAAGCTGATATATTACCTATTTTAAT
TTCGTCACTCTTCTTTATATgatatgaaaaatagaaaaagttagaaaaga
tagaatcactgattgaaaataGCCGACAAGTAAGAAAATATGGTCTGAGT
CTGATTTCTCCCCTTTCCTGTATCTTTGAAACATATTGACGAAATGAGAA
AGGGTGGTCGAACTAGACGACGTTATCTAACCATACTcaaatgatctttt
tatagatGGACATCAATAAAGCGGCAAAGCAAACAGGTAATATTATTTTT
GCCAGTTTTTCATTAGTCAAATAGTTTAATTTATGACAAAAACGAGTTCA
TTTTGTGTCATTGTGCctttttatttctcatttttttgatTTACGAGGAA
CTCTTACAAGGAATAAATCGACTTTTGTGCTTTGTATTATCAATGTTTCT
TACTTTCAGACAATAGTTTCACGACGTATACAACAGAAGACTTAGGAGAA
ATGACGACTTCAGAATTGAAAGGGCAAGACCAGTCATCGTTCACTCTCCT
CATGGAGCGAAAGGATAGTGGTAATGTGCAGGTAAGCCTAATGAGACACT
TTTCACACGCTCAGATTTTAGGTTATGAGTTCAAACGGctttgactttta
ttttgtaGTTCATAAATGTTTCAAGACTTGTGCTCGTTGTTTTTGACAAT
CCAAGgatgttttttaaagttttttcctCATTAATTTTCGAGTCATGAAA
AACTTTGATTATTTATCTGAAAAACGTTGATTCTTTTATCTGAAAAACGT
TGAttctgttttgaaattgaacTACCCAATCGGCGCTTTTTAAACTGATC
CTTTGCTTACACCGGTTCCTTTTACGCCTGTCTTGTCCGCCACTCCGCTA
CTTTCTAAGTTTGAGCCTGCTCCAGCAAGGAACGTTCATATAAACGCCAA
AACCTGTGAAACAATCACTGAGCAAACTTCAGGAAAGTCTTAAAAAACAC
TCCATGATATGCGAATGACTataattacatgtttttcttttcataagcat
aacgtttatNTGATATGCGAATGGCTataattacatgtttttcttttcat
aagcataacgtttataaacaTACTAAGACCTGGATTTGCTGAAAAATAAA
GCATATCATTAGCTTAGCAATGAGCTTTGGtcattgaacaaattttggTC
ATTGGGAGAACAGAATTGCAGGATTCCTAATTTTCCAAGAGATTGAGCCT
TTGGTCATGTGGACGACGATATATACGTAGAAGAAATTCCTTCATCACTT
GATGATcgtcaacaatattttttaataactttCTTACATAGGATGAGGAG
ATGTCACCGACAGCACGTTTACAGCATTTGTTGACAGAATCACGAAAGAT
GGTCAAAACATTAGAAGAATCTCCAGATCTATCATCTATCCATTCGTCAC
CAAATAACCTGTTCCTGGTAAATATCTACAACTCTAATGCCACTATCTAC
CACTTATTAGGACACTTTACTTTTGAAACAATTTCTCAGCACCCATCATT
AATTAAAAATCTTTGATTATTCTTCTCGAAAATATCTTCCCAATGGTTTA
CAACTTTTTAATATAACTTGGAAAATGTCAAAGCAGTAAAATGAAttgtc
aaaataatttattcgCATTAATAGGAGGAGGACCCATTAAATTGGAAAAA
CAACGGTAAAAGAAATTTCCACTCTGTATTAGATCTAGGTTAATGTAGCT
TAAaccaaatacacgttttttttttttaagaaacatgaggctcagaatgc
ctaaaaactaagaaacatctaagaaacatgttgaggctgagaatgagaaa
ataacattttttaattaggtttttttaagaaccttcaaatccagcctttc
ataaggctgattatgtcaaaaagtttagaaacatgtaagaaacatttaag
actcaaaaggccgatttcttaagaaacattgaggctgcttggtagaacta
gttttttaaaaaaaaaaaaaa

Coding sequence (CDS) from alignment at sc0003851:146..2966+

>TCONS_00043011 ID=TCONS_00043011|Name=TCONS_00043011|organism=Clytia hemisphaerica|type=CDS|length=3762bp|location=Sequence derived from alignment at sc0003851:146..2966+ (Clytia hemisphaerica)
ATGAAACAAAATATGTATAAACAGGACGACGAGCTAAGTATGATTACTTT
TTCTGAACTTGACGATAAGTGTATGGACGTCTTTGATAAAATGGAATTGA
TGGAATCGGCTGCCGTCAAATTAATACACAGATCATCATCTGTTGAAGAC
GAAGTGGTGGATGACGGGATTGATTTGAAACATTCCGAAGAAACACTGTC
AACTAATGGTGGTCATGTATTGCCAAATGGTGGCCATCGTGTGTTGCCGA
AACCGAACCTTGAAGGTCACTTTCAAAagatGGACATCAATAAAGCGGCA
AAGCAAACAGACAATAGTTTCACGACGTATACAACAGAAGACTTAGGAGA
AATGACGACTTCAGAATTGAAAGGGCAAGACCAGTCATCGTTCACTCTCC
TCATGGAGCGAAAGGATAGTGGTAATGTGCAGGATGAGGAGATGTCACCG
ACAGCACGTTTACAGCATTTGTTGACAGAATCACGAAAGATGGTCAAAAC
ATTAGAAGAATCTCCAGATCTATCATCTATCCATTCGTCACCAAATAACC
TGTTCCTGGAGGAGGACCCATTAAATTGGAAAAACAACGGTAAAAGAAAT
TTCCACTCTGTATTAGATCTAGGTTAAATGAAACAAAATATGTATAAACA
GGACGACGAGCTAAGTATGATTACTTTTTCTGAACTTGACGATAAGTGTA
TGGACGTCTTTGATAAAATGGAATTGATGGAATCGGCTGCCGTCAAATTA
ATACACAGATCATCATCTGTTGAAGACGAAGTGGTGGATGACGGGATTGA
TTTGAAACATTCCGAAGAAACACTGTCAACTAATGGTGGTCATGTATTGC
CAAATGGTGGCCATCGTGTGTTGCCGAAACCGAACCTTGAAGGTCACTTT
CAAAagatGGACATCAATAAAGCGGCAAAGCAAACAGACAATAGTTTCAC
GACGTATACAACAGAAGACTTAGGAGAAATGACGACTTCAGAATTGAAAG
GGCAAGACCAGTCATCGTTCACTCTCCTCATGGAGCGAAAGGATAGTGGT
AATGTGCAGGATGAGGAGATGTCACCGACAGCACGTTTACAGCATTTGTT
GACAGAATCACGAAAGATGGTCAAAACATTAGAAGAATCTCCAGATCTAT
CATCTATCCATTCGTCACCAAATAACCTGTTCCTGGAGGAGGACCCATTA
AATTGGAAAAACAACGGTAAAAGAAATTTCCACTCTGTATTAGATCTAGG
TTAAATGAAACAAAATATGTATAAACAGGACGACGAGCTAAGTATGATTA
CTTTTTCTGAACTTGACGATAAGTGTATGGACGTCTTTGATAAAATGGAA
TTGATGGAATCGGCTGCCGTCAAATTAATACACAGATCATCATCTGTTGA
AGACGAAGTGGTGGATGACGGGATTGATTTGAAACATTCCGAAGAAACAC
TGTCAACTAATGGTGGTCATGTATTGCCAAATGGTGGCCATCGTGTGTTG
CCGAAACCGAACCTTGAAGGTCACTTTCAAAagatGGACATCAATAAAGC
GGCAAAGCAAACAGACAATAGTTTCACGACGTATACAACAGAAGACTTAG
GAGAAATGACGACTTCAGAATTGAAAGGGCAAGACCAGTCATCGTTCACT
CTCCTCATGGAGCGAAAGGATAGTGGTAATGTGCAGGATGAGGAGATGTC
ACCGACAGCACGTTTACAGCATTTGTTGACAGAATCACGAAAGATGGTCA
AAACATTAGAAGAATCTCCAGATCTATCATCTATCCATTCGTCACCAAAT
AACCTGTTCCTGGAGGAGGACCCATTAAATTGGAAAAACAACGGTAAAAG
AAATTTCCACTCTGTATTAGATCTAGGTTAAATGAAACAAAATATGTATA
AACAGGACGACGAGCTAAGTATGATTACTTTTTCTGAACTTGACGATAAG
TGTATGGACGTCTTTGATAAAATGGAATTGATGGAATCGGCTGCCGTCAA
ATTAATACACAGATCATCATCTGTTGAAGACGAAGTGGTGGATGACGGGA
TTGATTTGAAACATTCCGAAGAAACACTGTCAACTAATGGTGGTCATGTA
TTGCCAAATGGTGGCCATCGTGTGTTGCCGAAACCGAACCTTGAAGGTCA
CTTTCAAAagatGGACATCAATAAAGCGGCAAAGCAAACAGACAATAGTT
TCACGACGTATACAACAGAAGACTTAGGAGAAATGACGACTTCAGAATTG
AAAGGGCAAGACCAGTCATCGTTCACTCTCCTCATGGAGCGAAAGGATAG
TGGTAATGTGCAGGATGAGGAGATGTCACCGACAGCACGTTTACAGCATT
TGTTGACAGAATCACGAAAGATGGTCAAAACATTAGAAGAATCTCCAGAT
CTATCATCTATCCATTCGTCACCAAATAACCTGTTCCTGGAGGAGGACCC
ATTAAATTGGAAAAACAACGGTAAAAGAAATTTCCACTCTGTATTAGATC
TAGGTTAAATGAAACAAAATATGTATAAACAGGACGACGAGCTAAGTATG
ATTACTTTTTCTGAACTTGACGATAAGTGTATGGACGTCTTTGATAAAAT
GGAATTGATGGAATCGGCTGCCGTCAAATTAATACACAGATCATCATCTG
TTGAAGACGAAGTGGTGGATGACGGGATTGATTTGAAACATTCCGAAGAA
ACACTGTCAACTAATGGTGGTCATGTATTGCCAAATGGTGGCCATCGTGT
GTTGCCGAAACCGAACCTTGAAGGTCACTTTCAAAagatGGACATCAATA
AAGCGGCAAAGCAAACAGACAATAGTTTCACGACGTATACAACAGAAGAC
TTAGGAGAAATGACGACTTCAGAATTGAAAGGGCAAGACCAGTCATCGTT
CACTCTCCTCATGGAGCGAAAGGATAGTGGTAATGTGCAGGATGAGGAGA
TGTCACCGACAGCACGTTTACAGCATTTGTTGACAGAATCACGAAAGATG
GTCAAAACATTAGAAGAATCTCCAGATCTATCATCTATCCATTCGTCACC
AAATAACCTGTTCCTGGAGGAGGACCCATTAAATTGGAAAAACAACGGTA
AAAGAAATTTCCACTCTGTATTAGATCTAGGTTAAATGAAACAAAATATG
TATAAACAGGACGACGAGCTAAGTATGATTACTTTTTCTGAACTTGACGA
TAAGTGTATGGACGTCTTTGATAAAATGGAATTGATGGAATCGGCTGCCG
TCAAATTAATACACAGATCATCATCTGTTGAAGACGAAGTGGTGGATGAC
GGGATTGATTTGAAACATTCCGAAGAAACACTGTCAACTAATGGTGGTCA
TGTATTGCCAAATGGTGGCCATCGTGTGTTGCCGAAACCGAACCTTGAAG
GTCACTTTCAAAagatGGACATCAATAAAGCGGCAAAGCAAACAGACAAT
AGTTTCACGACGTATACAACAGAAGACTTAGGAGAAATGACGACTTCAGA
ATTGAAAGGGCAAGACCAGTCATCGTTCACTCTCCTCATGGAGCGAAAGG
ATAGTGGTAATGTGCAGGATGAGGAGATGTCACCGACAGCACGTTTACAG
CATTTGTTGACAGAATCACGAAAGATGGTCAAAACATTAGAAGAATCTCC
AGATCTATCATCTATCCATTCGTCACCAAATAACCTGTTCCTGGAGGAGG
ACCCATTAAATTGGAAAAACAACGGTAAAAGAAATTTCCACTCTGTATTA
GATCTAGGTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026760	XLOC_026760	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043011-protein	TCONS_00043011-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003851	supercontig	sc0003851:146..2966 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.384817	0.769858	0.126683	1.57225	0.723997	0.484385	0.23263	0	0.556965	0	0.219399	0	1.01995	0	0.103497	0	0	0	0.162082	0.364043	0.315502	0.44197	0	0	0.297982	0.815763	1.61754	0.777331	0.188426

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00043011 vs. Swiss-Prot (Human)

BLAST of TCONS_00043011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00043011 (transcript) - C. hemisphaerica