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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042791 ID=TCONS_00042791|Name=TCONS_00042791|organism=Clytia hemisphaerica|type=transcript|length=1803bp
ttttggcCCAGCGCGGTTAGCGtaagggcctttcatttgcactGTGCCCG
CTGTAAGTAACTCGCATGGTAGACGGAGCTCGTTTCATTATTTGAGGAAA
ACAATGATTACAGGCTAATCATCAATTCTTTGCCGCGGAAAGTCATGTGA
TatacttttcaaccaatcactatggtttaactcactaaaagaatTTGTTT
ACCGATAAGACAATgttaatctttagtaagtgtgATCTAATTCTGCTCAA
ACCTTATGGAGCTCATGGATTCTGTCTTGTTTTTATCTTTGACGTTTGAC
TGCTTCAGACACACGTTTTTTTACCAGTTGTAACTATGCTGTTAAAAATT
GAGACCCTGTTGATCCTGTCCAGCTGCTGTATTTATTACAAATAGTGCAA
ATACAAACATCCATCCATATCATTATTGATGCTGAAAGTAGTTTTTCCAG
CTGATCCTGTGGGTATTTATTACAAATAGTGCAAATACAAACATTCATAT
CATTTGATGCTGACTGAAGTTTCTTGCTCAATCGCGAATCTGCTCCCTGC
TATCATCATATACATTTCTTTCAAAAGTGCTCACTCGAATAATTAATGAC
AAGAAAGAAATCCTATCTTTATTCCAATCCTTTACAGgAATCAACGCCGA
AACCACCGATCTGTCGGTGGAGTGTATACCATACTACACAGCCAAACAGC
CAATCAGCCAAACAGCCAAATCTTATTAAACTTACTCAGCTTACTAAACT
GACTAAACTCAATCAGCTTACTCGGTTAACAATACCGTTTTAAAATATAC
ATTGAAGTTTCCTGGGAGTTTCCTGTGTCATTTTTTTGTTCTTCCCTTCG
CAAAGTAATCTTTAGGCGAAAAATCATGATATCGATCGAAGCTTATCGTA
GTTCGATCGGCAACTTTAATGGAACTAGGCAATTTGACCTTTGTTCAATA
TATCCATATATCGAGGTTTTAAGGTTGGCTCGTCACTTCCCAGTAAAGGG
CTTTCTAGACTTCTTAAAACCTTCCCTTTTTTAGTAGAATCTTTctaaag
taaaagaaagtagaTCAGGGTTTTCGAATagtgtttttcaaaaagtcgaa
aTAAACTCTGAAATCTGAAATGAAGGTGCGTTTTAGCTCCGAACCAGGTA
GAAGAATGTGCATgctaaaatcatttttataaaaaggctTTTAAGCGAGA
ATGTTTTCAGGTAGCAAACTTAACGGAGGAACAgagcatttaattttttt
gtagaacgctattttttttcaaggagATAAAAAAAGCATTACTAATACAT
ACGATGGAATAATTACAAGTAATACTAATAACTGTAAAATGAAAGATCTA
TGTTCTACAAAAAATAACTATTTCTTTAAAAGAAACTCCTACAGCTCTAT
TACAATAAACATTGCCTtacatttcttataaaaaacgtaccTATTGGAAA
CACCTGAAAACACGGAATTTGACCCATGTGCTGTTATTTCTATTAAAAAA
CAATATCTGAAATACTACAGATTATTCAGTGCCATCTACAAAACCTCTAT
AGAAGGGAGGCTGCGTACCAGAAATATACATTTTAACAATATAAATATGA
AAAACTATGTTCGAGAGGCCTTGAAGTGTCACGGGAATAGACCACTTGAT
GTCCGATTAATATTGTACATACAATGAAAGACGTCTTATGCTGGGCCGTA
ATGCCGCCAGGCTACTtgtgtttttacataagtgtttccgtttcatacgA
GACAAATATTTCATATCAGTTATTGTGCTGTATAAGCAAAGACTTTGCAG
GCT Run BLAST on NCBI transcript from alignment at sc0003679:96..5268+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042791 ID=TCONS_00042791|Name=TCONS_00042791|organism=Clytia hemisphaerica|type=transcript|length=5173bp|location=Sequence derived from alignment at sc0003679:96..5268+ (Clytia hemisphaerica)
ttttggcCCAGCGCGGTTAGCGtaagggcctttcatttgcactGTGCCCG
CTGTAAGTAACTCGCATGGTAGACGGAGCTCGTTTCATTATTTGAGGAAA
ACAATGATTACAGGCTAATCATCAATTCTTTGCCGCGGAAAGTCATGTGA
TatacttttcaaccaatcactatggtttaactcactaaaagaatTTGTTT
ACCGATAAGACAATgttaatctttagtaagtgtgATCTAATTCTGCTCAA
ACCTTATGGAGCTCATGGATTCTGTCTTGTTTTTATCTTTGACGTTTGAC
TGCTTCAGACACACGTTTTTTTACCAGTTGTAACTATGCTGTTAAAAATT
GAGACCCTGTTGATCCTGTCCAGCTGCTGTATTTATTACAAATAGTGCAA
ATACAAACATCCATCCATATCATTATTGATGCTGAAAGTAGTTTTTCCAG
CTGATCCTGTGGGTATTTATTACAAATAGTGCAAATACAAACATTCATAT
CATTTGATGCTGACTGAAGTTTCTTGCTCAATCGCGAATCTGCTCCCTGC
TATCATCATATACATTTCTTTCAAAAGGTAATTAATTAAATCATTgagat
atttttttaatataggCGACTATAAAAAATATGTTCTGTTTGTGTCAGCC
GACCGACAAAGAAGTTGGCAGACAAAGATTCCAAGTCTGACAAGTCGGAA
AATTGTtgcaatttttcattgaaagagCGAATGAATACTAAAAACTATAC
TTTGAAATCACCTAATTTACTACCGTCATCCTCTACATCATTTACAGTCC
AGTTACAACAATCACACCACCATCTTCAAGACTTGGCTGGTCGCGCAAAA
TGAATAATAAAGAAATGGCGGCctcaaattgaaattgaaaccgTGCACAC
CAAATTGCCAGATAAACTGGAATACAAATACCGTTTTAGTTAcaagaaaa
atttgtaaaagCGTGCTTGGCCATTGTCGAACAGTTATTAGCCTGCAATC
GCGACACGAAAATGTAATTCGGGTCTAaggggagccgtccatattcattt
gacaaacAAAACGTCACattgacgttatgagggggtggggggttttcaaa
agttaggtttgacgttataagaaatcaaaggtatacctttttgtgaaaat
cgcggATATTTGTAACCACCAACCACACTATACTTTATAAGCTTTCAAAA
ACATATTCGTGTATGAagtacatgaaaatttgctgctcgcataatcccat
tggtttgggctatgatatcattacatcatattttcattgtttgcgcgatc
gagcgaaccacatcgcacaagtgggcaaagaaggtggtacgCCTAAAGCA
CGGCACCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNttttaatttctttttaaataaaggtcattagtt
aaaagaacacatacacacacgggtacaaccaagtacggactttgcgacgg
aacgggaaaactttgatgaaaaaaggctacaacttttggtatacatcagt
acatcgcttgacgttatctgtgggggtggggggttcagaggattagtcaa
tttgacgtttcgagttgtcaaatgaatatggacgggtccCCTAATGAACA
TGGACGGTTTCCACATCCATACAAATCTTTCGCCCGCGGGCACTGCTTGG
Tgcgccatccatatagtacgtacgcagtgaagggggagagggggtttagc
aaaagcgtacatctattgtttaaatgacattatttctattgttttctgcg
tacaaggggggagggggtatcaaatttttggaaaatctttgcgtacgtac
tatatggacggccccctTACTATTTAAGCAAGTTTGAGAGCTTACAGAAA
CCAGTCCTTCGTTTCACTCTGTATGTAATCATGaaataaaacaataacaa
aatgacACTCTTGTGCGCTCGTAAAAAAAGTAATGGCTGTGGTTttgacg
cgaacggaacatattttcgaTTGCCGTCATACACCAAAACAATATATTTG
GAATGGCTAGCAAATAGTGTCTATTAAATAGACTGTGCAGCTTCCTTTTA
ATGTTGTTGCTTGGAGAACGTAGCAATAATGTCGGTCGGACCCCTccaca
cctttcccgtaattctggttttctggattttttttctgcaGTCTTTGCAC
TCCATCGCTTTTTAAAAgagaggtaaacaaacccaatTTTGCTTGCTTTT
CCTTAGGGAAGAGTGGTTTTTGGCCTTTTTCTTAACTTCTATTGCatgga
atttttgaaaacttcagTATGCTTTTACTACCAGTCAGCAATGCTCAAAG
ATAAAGATAACAATTTTTACGTTTGCTCTGAAAATAGTTTGTCTTACTTT
AGTGTGTGATCAAAATGACACAGTCTGAGACTAGATGGCATAATGTTTAA
TCTATTTCTGGTTTAAAACAATGGATGTAGTAATATGtattaaaaaattc
cagaatgacCCTATTAAGCGCTCCCTAAGCGCTGCAcctatagatttttt
tttcaaaataagtgCTACACCTAGAATCCAATGCAAAGCGGCGCTtatta
gaaaatcaagaaaaataaagcCGCGCTTATTAGaacataaagaaaaatga
aaaacaaatgttttttacTCATATTCTACTGTCATCAATTCGTTTAACAA
AACGCATTAAATTTTTCTACTGAAACataatcttttaaaatatattcCAT
TTTTTCTAGTGCTCACTCGAATAATTAATGACAAGAAAGAAATCCTATCT
TTATTCCAATCCTTTACAGGTGAGTTAACTATGTTTTATTAACCGCAAGT
TGTATTTAATTGAAGGGGAAGTCGAGTACATTTTaaatggaagaaatttt
tgtggcATTCAATTTCGTGGTTGACACCCAAAaccacaaaaatttcttcc
ctctgatcaaaaacaaaaaatggacgGGGTCTTTCTTTCTATTTACTGTA
Atacttaaaacttaaaattgcattttagggctgcttaaaataatttgaaa
tttttgttttctctttcgaATTTTGATTAAATGTGGATGGGGGAGGCTCC
ATTATAAAATAAACTTTGTGATGAAAAAATTTACACCCCTCCtatctctc
tctctttctctctaaAATTAGGCACAAAAGACAAGGACATGAATAGAAAA
ATAGACTCATTAGCAGTATTCAGAAGTCCCTGAAAAATTATTCGCCTGCC
TTTTTAGGGGCTTATAATCTTATCGAGTTATAAAATATCGAGCTGGTCTT
CGAATTATGAAGCATGACGTCATGCTTCGAGTTATGACTATTTCCTAACT
CAATGAATCTGTTTATGAAATAAGGTATCGAGTTATTTAACTCGATGGAT
TAGGTTTTACATTACTAATGAAATAAAGTCACCgagttactttaatggga
taaactttcgcggggattaaatttcgcggatttcgcggatttgggtgtca
tccgcgaaaatccgcgaaattaagtccctatggaaatttggaagggcctc
ttccgcaaaatatttctaaacaaaactcaaaatatgtcagataaatacta
tttgaatggttacttgcatcaaagaagcgctaataatgtgtatttcaaca
accaacatgcatggatttggcagtaaaagccacaaaatcgtgaaaatatt
gccacctgCAAAATTGAGTCCcagtgaaatttttgaaattcgcGGATAGT
cccaaccgcaaaatttaatccccgcgaaagtttatcccattaaagaaCAT
AACTCGATAAGTTAGTGTTTAAAATAAGTCATCGAGTTACACAACTCGAA
AATATGTAACTCGATTTTCTTAACTCGAAGATAATAACTCCCCCTTTTTA
GGAGAGAATAGCAATTCAATAAGAAATTGAcgtttcatattttctttttc
gttttaggAATCAACGCCGAAACCACCGATCTGTCGGTGGAGTGTATACC
ATACTACACAGCCAAACAGCCAATCAGCCAAACAGCCAAATCTTATTAAA
CTTACTCAGCTTACTAAACTGACTAAACTCAATCAGCTTACTCGGTTAAC
AATACCGTTTTAAAATATACATTGAAGTTTCCTGGGAGTTTCCTGTGTCA
TTTTTTTGTTCTTCCCTTCGCAAAGTAATCTTTAGGCGAAAAATCATGAT
ATCGATCGAAGCTTATCGTAGTTCGATCGGCAACTTTAATGGAACTAGGC
AATTTGACCTTTGTTCAATATATCCATATATCGAGGTTTTAAGGTTGGCT
CGTCACTTCCCAGTAAAGGGCTTTCTAGACTTCTTAAAACCTTCCCTTTT
TTAGTAGAATCTTTctaaagtaaaagaaagtagaTCAGGGTTTTCGAATa
gtgtttttcaaaaagtcgaaaTAAACTCTGAAATCTGAAATGAAGGTGCG
TTTTAGCTCCGAACCAGGTAGAAGAATGTGCATgctaaaatcatttttat
aaaaaggctTTTAAGCGAGAATGTTTTCAGGTAGCAAACTTAACGGAGGA
ACAgagcatttaatttttttgtagaacgctattttttttcaaggagATAA
AAAAAGCATTACTAATACATACGATGGAATAATTACAAGTAATACTAATA
ACTGTAAAATGAAAGATCTATGTTCTACAAAAAATAACTATTTCTTTAAA
AGAAACTCCTACAGCTCTATTACAATAAACATTGCCTtacatttcttata
aaaaacgtaccTATTGGAAACACCTGAAAACACGGAATTTGACCCATGTG
CTGTTATTTCTATTAAAAAACAATATCTGAAATACTACAGATTATTCAGT
GCCATCTACAAAACCTCTATAGAAGGGAGGCTGCGTACCAGAAATATACA
TTTTAACAATATAAATATGAAAAACTATGTTCGAGAGGCCTTGAAGTGTC
ACGGGAATAGACCACTTGATGTCCGATTAATATTGTACATACAATGAAAG
ACGTCTTATGCTGGGCCGTAATGCCGCCAGGCTACTtgtgtttttacata
agtgtttccgtttcatacgAGACAAATATTTCATATCAGTTATTGTGCTG
TATAAGCAAAGACTTTGCAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042791-exon-sc0003679-1491911889:96..672 | TCONS_00042791-exon-sc0003679-1491911889:96..672 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1510915933:96..672 | TCONS_00042791-exon-sc0003679-1510915933:96..672 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1575043694:96..672 | TCONS_00042791-exon-sc0003679-1575043694:96..672 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1491911889:2905..2964 | TCONS_00042791-exon-sc0003679-1491911889:2905..2964 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1510915933:2905..2964 | TCONS_00042791-exon-sc0003679-1510915933:2905..2964 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1575043694:2905..2964 | TCONS_00042791-exon-sc0003679-1575043694:2905..2964 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1491911889:4103..5268 | TCONS_00042791-exon-sc0003679-1491911889:4103..5268 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1510915933:4103..5268 | TCONS_00042791-exon-sc0003679-1510915933:4103..5268 | Clytia hemisphaerica | exon |
| TCONS_00042791-exon-sc0003679-1575043694:4103..5268 | TCONS_00042791-exon-sc0003679-1575043694:4103..5268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003679 | supercontig | sc0003679:96..5268 + |
Blast
The following BLAST results are available for this feature:
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