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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042731 ID=TCONS_00042731|Name=TCONS_00042731|organism=Clytia hemisphaerica|type=transcript|length=1092bp
CGGACCTCAAACACGAACCCACGTTTTGTCTATTCCTTTGCCGTTCAGTT
TCTTCTCAGGAAGTGTGTGCCATCGACAGCAGATAGAAAATCCTGGACAT
AATATTTTTAGCTCAAAGATGAAAATTATCAACCAACATCTTCAATCCAG
CGGTTGCCATCTTGCCGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCG
AGATTCATTTGCAAATCGTCAACGGAGATAGCAGGGATTTGAAGTCATCA
CCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATATGCCTGGATGAC
CTCACTCAGCATCGAACCGGATGATGGTACTATCGAACCCAAATTTGTTA
AAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTGTCGGTCGGTGG
ATGATGGCTGTGATGTCAAGTGATTCGTCAACGTTTCCAGTTATCGCGTC
TATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGTGAAGGTCAATT
TATTACAGTCCTCGTGATCAGTAACCGTATTATCAGTTCGTTCGTAATTA
CCTGACGCCTCAAAGATATTGTTGTTGTCAACAGTCTCGTCGGTTGGATG
GTTGTCACGGAGCAACCCTGTCGCTGTACTTGAGTCGTCAACACTGTCAG
GATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGTATTTATGTCATCA
GTATTTGTTGTTAAgtcatttgttttgttttggtcaTCAGTAATCATCGT
AACGTCAAAATCATCAGTATCTATTGTATTTGTGTCCTGGTTTTCCGCAA
TTGTCAAAGTCGAATCGTCTCGGTCAACTGGTTTTACTGTCAAGTCGCAT
TCGTCAGAAGTTGTCAAGGTGCAGTCGTCAGAAGTTTTGTCAGCTGGTTT
GGATGTGGCGGAGGATGTGTTCTTCACAAAATCTGGTCGTTTCTCTGTAC
ACACCACTGAAAACCCAGAAGACTTTGGTTTTGCTGCAGGTGACGAGAAG
AAAAGGACTTCGATCTTATCAACCAGAATGGGGGCGGTTCAGTGTACAAT
ACAGCGATATGTTTTGGAACTGTGCAGCACTTTCCACCCACC Run BLAST on NCBI transcript from alignment at sc0003636:2013..9582+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042731 ID=TCONS_00042731|Name=TCONS_00042731|organism=Clytia hemisphaerica|type=transcript|length=7570bp|location=Sequence derived from alignment at sc0003636:2013..9582+ (Clytia hemisphaerica)
CGGACCTCAAACACGAACCCACGTTTTGTCTATTCCTTTGCCGTTCAGTT
TCTTCTCAGGAAGTGTGTGCCATCGACAGCAGATAGAAAATCCTGGACAT
AATATTTTTAGCTCAAAGTAAGTTGAAATCAACTTCTCTTTTCGATTTAA
TGGTTTGCAATTTGAATGAACGTCAAGAGCAGCCACCTTCTCGAGGTCCT
TTTCTCCTGAAAAATCTGACATCgtgttgtgtttttcacaagtatagctc
ctggatttttttaacAGATTGTCCGCTtgaaaattgtatgtgtttttcct
taaaatgtgctcctggattttatgAACAGAGTCTtttaaggcgacccctg
gattttacctgagTGTTTAGAGGAAAGTCTCAGCAGCTGCTTTTGGAACC
TTTGCGGATCATtgattcaaaatattcaaactaACGAATCATAACTCTAC
AAGTTTTGGCACTATTTCaattaacatcaaaacattAACAATCTTACACT
GGGTTAAATGTGCTTTTCTTTTTGGAAGAGGCCATTTTAACTTATCATAG
GGGGACAATCATGGACGACATGGATTTTCCGTAGcatttttcttttgaga
aaCTTCAGGTCTGAAgattttttatgggaaaatcttggattttcagcaaa
ataaagcaaattttatggattttctgaTACATATGCAATTTTccgaaacc
tttttcaaatttctcaagatttccaagtgaaaaataaatctaaaaaacct
atttttctggaactgcccaGTGCAACTAAATACTTCGTAAAAGccacttt
ttgaaatttcttgacCTCAAACCAGCTGTTGCAACCGTAAATCGAAATGT
CACAAAATGAATTCATTTGATTGATATAGACAAGAAATGTGAATCAAAGC
TGTGATGCGACAATAATAGAATTGTTTTTCTTGCAgaacaaacttaaaaa
aaaaattatttcaacaaGAACATGATATTCTAATTAAAGAACATAACACA
ATTATGAAATGttgtaaaaaatagaaaattatctGTCCTGTACGTATAAT
TGTAATGCATATTTATCCTTGTTAGCTATAACTTTCTCAAAGTAGAAGTT
ATTGATTGAAGCTAAAATTCAGAATCTAAAAGGCACTTATTACAGTCAAA
AGCACCCAATTTTAGGCAAAAATTAACCAGATTAATCATAATTGTAGTTT
ATTCCTGCTAccagtttcaaatttttagattaGACGAAATAAGTTCCCCC
AAAATATTTAATCTGCCTTATTTGAACAGGCCTAAAGCTTTCTGCAAGTT
ATAGAAATCCTagaaaaatctaattaaaaaatgaaaaaaattatataaat
aaaaaactatttacaaatacttaaatcttttttctatatttttttaattt
ttcctgtatttttgtCTCTAGTGTCGACATGTCATAATCCTGTTCTAGTT
CAAAATCGTATTTTAGCTTCTTGTAAATCTCTGCCACCTTATCAGGATTG
AGTTTTTCAAATCCATGCCAGCCCTttaaattacacgtttttaaCTCTTC
AGGATGAAAATTATCAACCAACATCTTCAATCCAGCGGTTGCCATCTTGC
CGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCGAGATTCATTTGCAAA
TCGTCAACGGAGATAGCAGGTAAGGTGTCCTCACCAGTGAAGATAAGAGG
GTTGCGTTCAATAGCAGTCTTTATGTCTTTTAGTTGAGACATAATTTCAG
TGTTCATGTTTGATACAACATTTTTGAGGGAGATGACTTCTTCTTTTAAC
TCGCTATTTTCGATCTTTAAAGCAAATACTTCCATTTTCAGGGATTTGAA
GTCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATATGCCT
GGATGACCTCACTCAGCATCGAACCGGATGATGGTACTATCGAACCCAAA
TTTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTGTCGG
TCGGTGGATGATGGCTGTGATGTCAAGTGATTCGTCAACGTTTCCAGTTA
TCGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGTGAAG
GTCAATTTATTACAGTCCTCGTGATCAGTAACCGTATTATCAGTTCGTTC
GTAATTACCTGACGCCTCAAAGATATTGTTGTTGTCAACAGTCTCGTCGG
TTGGATGGTTGTCACGGAGCAACCCTGTCGCTGTACTTGAGTCGTCAACA
CTGTCAGGATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGTATTTAT
GTCATCAGTATTTGTTGTTAAgtcatttgttttgttttggtcaTCAGTAA
TCATCGTAACGTCAAAATCATCAGTATCTATTGTATTTGTGTCCTGGTTT
TCCGCAATTGTCAAAGTCGAATCGTCTCGGTCAACTGGTTTTACTGTCAA
GTCGCATTCGTCAGAAGTTGTCAAGGTGCAGTCGTCAGAAGTTTTGTCAG
CTGGTTTGGATGTGGCGGAGGATGTGTTCTTCACAAAATCTGGTCGTTTC
TCTGTACACACCACTGAAAACCCAGAAGACTTTGGTTTTGCTGCAGGTAA
GCccaaattaacttttttgaaaacgaaagagtTGACATTGGCCATCTTCT
CTGTCGAAATAATGTCTGTTTGTGGCTATGAaggaaaaaaagttcaattt
caaTATCTTTCTCAAGTTTGCTAAATATCTTAAGTGTTACCAACTGtttc
aatgttttcaattttggcctttttcacaAAGTTTTATGTTGATTGTtggg
aaaaaaaatattcactaAATTGAAAGTCTGAAAATGTACATTAAATGAAC
TTTTTGGTTAGAATTTATTTTGCCAAGTTAATTATTTCACTAATGCCAAG
TAAGTTCTCCACaaaatttatcttattttttattccaaaaaatacCAGCG
TTTTCTTTTGTCAAGAGCATTTAAATATTTACAACATTTTCCATTTCTCT
AGTATGCGGCagaaggaaaataaaaaaagtcagcatgagaaagtcaaaaa
ataaacGAACAAATATGATTTCTTTCAATTCAGTCTTTTTCTCCTTACAC
tacttttttcctctttttcagCCTTAGATATTGAAATTGGGTCGTTTGCT
AAAATTAATTCTCACCaaatttaataatttgattaaatCGCCAAATTTCT
GTCCtaattgcaccaaaattggcAATGGGCTCgattgccaaaatttcttc
ttgcaaatgaaatttttgtcttTGGAAGGATTAACGGTTTTTTGACATAT
TAACGGAGAGTATAAACAACATACCTTTTGcacttcaatatttttgtcac
gcTTTGATTCTTGCTCTCTGACCTTGTCGACTTTGTTTTTCCTCTTCTTT
TTGTCCTCTGGTTTCTATGAATGTTAATAAGATTTTTTATCACAACTAAG
AAGAAAATAAGTTTAAACTAGCTATCGTGACGTCACCCGAGTTTACTCTT
TATTGTAGAAATTAAGCTAGATTTGCTTGGTACTCACGAGGGAAATGGGT
AGAGCTAATTTTGgcaagaatttaatttggcatgTGACAGGATAAGTCCA
AAGTCAGGgtgaaagaattttaaaatcttaaaaaggtTGATGTCACAAGG
GATTTGAGACATTTAAGGTAAATGTAAAAGCTTTACCTCTTCGGCTTCAT
TCTCtgcctttttctttttggtcacTTTCTTCGTTGGTTTTACTTGTTTT
TTCTTTGTGATTGCCTACACAGAAAGAGGGAAAATCGTATATGATGAGCC
CATGCtttattcttagagattaataaacggggggtcctaatactttaggc
gtacaaactttcgcgagcagaaactttcgcgaggacgaaaaatcgcgaaa
ttcacgacatttactttcgcgaatttaacggaaaaatatttttcgcgagc
atacactttcgcgaatcaagacgtaaaattgagaattttcacatgagaAA
ATGGCTTACGTACACAAGTACTTCTTGGGTTGGCTTGAAacaattgtcct
ttgacttactAGTCtattagcaggctaaaaagtgccacaaaagttacatt
ttattcatattttgtcaagaatttttcgcgagcataaactttcgcgaatg
gcccttcctagaatttttaaagacatttactttcgcgaaaagggccaaaa
ttcgcgaaAATCGCGAAAGTTTCTGCTCGCAAAAGTTTCTACGCCTAAAG
TAGGGTCTGGGGGAGTTGGTAATTTCCGAAAAGTTAACAAgtgggggcgt
ttatttggaacctaagagtaatcgcgccatccagtctatcaaaaagctta
aAGTGGACCCCAGGCTAGGGGTATTTTagacattgagtttcaagcccgaa
gggctagaggtcaatctctaacctttctcaggcaagaaaaattggagcct
taaaatatgcgccgtatttttgatgaccaattgaatctagcaattccttt
gtctttgagtgatatatttttcgaaattaagcggtaaattttagtttcaa
tctgtcatttgtgtaaaaaccaggcaggttgctcaaggccgcgcaacttt
ggtaggatttgttggcttcaaatcctaccaaagagattgacctctagcct
tcggcttgaaactcaatgattttAGAGCCATCTGATCTGTCCCAGGGAAG
tttactgctcaaaataataatttctgGTAGCTCAATCCCTGGTCTatcca
tttgaagtgattgcaataaaaaaattcaatcctACAGGCCCAGAAGGCCA
Attaggtctcaaaaaagtaccaactttaggccaattttcctagaaatggg
ctcttccagaaaaaaattgtacatgggggtggcggatataacaattttta
gtgactTACCCCCCGAACTGGGTGACTTTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcccccccccccctggacaagcatctgctgacccctgga
cagagcaaatttacccccggacaaggcaattttcgatgattttttgacag
attgaaactaaaatttaccgctaaatttcgaaaaaatcatcaatcgtaaa
caaaagaattgctagattcaatctgtcgtaaAAAAtgcagcgcatttttt
aaggcttcactttttcttgccggagaaaggttagagattgaactctagcc
cttcgggctttaaactcaatggtttaaACCACCTCTCGTACTTTggcata
attttttattcagaaaactgaaaagtcaatttttttgaaattttccattt
tgaataGCATTCTAGTGAAGTGATATCTTTTTcaaatcagtttttcatgc
ttaTTCTGAAGTCATTTTTGGCCCCtatgtaaattcctaacttgtatcac
tttgattttttaaatctcccccaactgtccccccccccccttttttttta
aNNNNNNNNNNaaatcagtttttcatgcttaTTCTGAAGTCATTTTTGGC
CCCtatgtaaattcctaacttctatcactttgattttttaaatctccccc
aactgtccccccccctttttttaaagcaaaacgcTTGTAAACAtacgaag
gctcagatttgcagatatcctaagcataacataagcatatatgcTAGCCT
GAAATATTGGTCAAgtaaaaaagacattccacagttagccacattccact
gctcaaaaatttaaatgctttttgaatcgaatattaacaaaattttaaag
attttatttaaaaatttggttgggtgaatcaaaagaataataattcttaa
gcatataataagcatattcTATGTCTGGATGCTATATATGGCCAAGATAA
AGTTTTTCAttcaataaattaaaaaatcagaTTTGAAAGACTACCTTCGC
TGACAGGAGCttaaacagggggggggtcagggtccaggatgataccaacc
cagggcccaaaaacctgacttttaaagatttgaaagtagtagacaccacc
accccctaaattggtatcaataccaacttgaaaaccccaattttctaaaa
aaaggggggacccacccccataAATTGgaatcgataccaacatgaaaatc
ttgattttctgaaaaaggggggacccaccccctaaattggtatcgatacg
aacttgaaaatcccgatttttcaaaaaaaaggggACCTTCCCCCCCCTAA
ATTGGCAATCAGTAAAAATGCAAGAAGTTTATATGCATGGGATACTAAAA
TATATTCacaataagtgtgcactcttttacATTTAAACTTTGTGTCATAA
CTtgatattgaataaatattttagtaaaatttcttcataatgatgacctc
ctaagatcaaagaatctctccagtgaaaatgaaagttatagcacttttct
acaagatcttcatttttttcttctttattttcatattcGTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGaggacccaccccctcattt
tggtatcaataccaacttgactttttgaaatttgaaaaaaaaaattgaca
ccacccCCCGGCCCTGGGTTTGGNTGACAGGAGCTTAAAACAAACTTATT
TGAAGTTCTACTTTAGTGTTTCAACTAGATACTTCCTCTCTCAAAATGAG
CTAGGCTCCCCTAACTAAGAAAGAAGACCTTTTAATAAAttgtcacgaac
atcacttgccttgtattcaaaaaaatacaattgTGATTATGTAtaatgtc
tcttgagacattaaaagGTTCTTTTATGCATAGAAAGTAGTAAAATCCAC
AGGGAGTCAattaccatggcaataatttcaaaacgaggcaagtgatgttc
gtaacgtaatttatgaaaaggcctattgaTATCGCATgttttttaatatg
tttttatttttctacagGTGACGAGAAGAAAAGGACTTCGATCTTATCAA
CCAGAATGGGGGCGGTTCAGTGTACAATACAGCGATATGTTTTGGAACTG
TGCAGCACTTTCCACCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042731-exon-sc0003636-1491911889:2013..2129 | TCONS_00042731-exon-sc0003636-1491911889:2013..2129 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1510915933:2013..2129 | TCONS_00042731-exon-sc0003636-1510915933:2013..2129 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1575043694:2013..2129 | TCONS_00042731-exon-sc0003636-1575043694:2013..2129 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1491911889:3565..3681 | TCONS_00042731-exon-sc0003636-1491911889:3565..3681 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1510915933:3565..3681 | TCONS_00042731-exon-sc0003636-1510915933:3565..3681 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1575043694:3565..3681 | TCONS_00042731-exon-sc0003636-1575043694:3565..3681 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1491911889:3854..4608 | TCONS_00042731-exon-sc0003636-1491911889:3854..4608 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1510915933:3854..4608 | TCONS_00042731-exon-sc0003636-1510915933:3854..4608 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1575043694:3854..4608 | TCONS_00042731-exon-sc0003636-1575043694:3854..4608 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1491911889:9480..9582 | TCONS_00042731-exon-sc0003636-1491911889:9480..9582 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1510915933:9480..9582 | TCONS_00042731-exon-sc0003636-1510915933:9480..9582 | Clytia hemisphaerica | exon |
| TCONS_00042731-exon-sc0003636-1575043694:9480..9582 | TCONS_00042731-exon-sc0003636-1575043694:9480..9582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003636 | supercontig | sc0003636:2013..9582 + |
Blast
The following BLAST results are available for this feature:
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