XLOC_026535 (gene) - C. hemisphaerica

Overview
NameXLOC_026535
Unique NameXLOC_026535
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0003636:2013..9582+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_026535 ID=XLOC_026535|Name=XLOC_026535|organism=Clytia hemisphaerica|type=gene|length=7570bp|location=Sequence derived from alignment at sc0003636:2013..9582+ (Clytia hemisphaerica)
CGGACCTCAAACACGAACCCACGTTTTGTCTATTCCTTTGCCGTTCAGTT
TCTTCTCAGGAAGTGTGTGCCATCGACAGCAGATAGAAAATCCTGGACAT
AATATTTTTAGCTCAAAGTAAGTTGAAATCAACTTCTCTTTTCGATTTAA
TGGTTTGCAATTTGAATGAACGTCAAGAGCAGCCACCTTCTCGAGGTCCT
TTTCTCCTGAAAAATCTGACATCgtgttgtgtttttcacaagtatagctc
ctggatttttttaacAGATTGTCCGCTtgaaaattgtatgtgtttttcct
taaaatgtgctcctggattttatgAACAGAGTCTtttaaggcgacccctg
gattttacctgagTGTTTAGAGGAAAGTCTCAGCAGCTGCTTTTGGAACC
TTTGCGGATCATtgattcaaaatattcaaactaACGAATCATAACTCTAC
AAGTTTTGGCACTATTTCaattaacatcaaaacattAACAATCTTACACT
GGGTTAAATGTGCTTTTCTTTTTGGAAGAGGCCATTTTAACTTATCATAG
GGGGACAATCATGGACGACATGGATTTTCCGTAGcatttttcttttgaga
aaCTTCAGGTCTGAAgattttttatgggaaaatcttggattttcagcaaa
ataaagcaaattttatggattttctgaTACATATGCAATTTTccgaaacc
tttttcaaatttctcaagatttccaagtgaaaaataaatctaaaaaacct
atttttctggaactgcccaGTGCAACTAAATACTTCGTAAAAGccacttt
ttgaaatttcttgacCTCAAACCAGCTGTTGCAACCGTAAATCGAAATGT
CACAAAATGAATTCATTTGATTGATATAGACAAGAAATGTGAATCAAAGC
TGTGATGCGACAATAATAGAATTGTTTTTCTTGCAgaacaaacttaaaaa
aaaaattatttcaacaaGAACATGATATTCTAATTAAAGAACATAACACA
ATTATGAAATGttgtaaaaaatagaaaattatctGTCCTGTACGTATAAT
TGTAATGCATATTTATCCTTGTTAGCTATAACTTTCTCAAAGTAGAAGTT
ATTGATTGAAGCTAAAATTCAGAATCTAAAAGGCACTTATTACAGTCAAA
AGCACCCAATTTTAGGCAAAAATTAACCAGATTAATCATAATTGTAGTTT
ATTCCTGCTAccagtttcaaatttttagattaGACGAAATAAGTTCCCCC
AAAATATTTAATCTGCCTTATTTGAACAGGCCTAAAGCTTTCTGCAAGTT
ATAGAAATCCTagaaaaatctaattaaaaaatgaaaaaaattatataaat
aaaaaactatttacaaatacttaaatcttttttctatatttttttaattt
ttcctgtatttttgtCTCTAGTGTCGACATGTCATAATCCTGTTCTAGTT
CAAAATCGTATTTTAGCTTCTTGTAAATCTCTGCCACCTTATCAGGATTG
AGTTTTTCAAATCCATGCCAGCCCTttaaattacacgtttttaaCTCTTC
AGGATGAAAATTATCAACCAACATCTTCAATCCAGCGGTTGCCATCTTGC
CGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCGAGATTCATTTGCAAA
TCGTCAACGGAGATAGCAGGTAAGGTGTCCTCACCAGTGAAGATAAGAGG
GTTGCGTTCAATAGCAGTCTTTATGTCTTTTAGTTGAGACATAATTTCAG
TGTTCATGTTTGATACAACATTTTTGAGGGAGATGACTTCTTCTTTTAAC
TCGCTATTTTCGATCTTTAAAGCAAATACTTCCATTTTCAGGGATTTGAA
GTCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATATGCCT
GGATGACCTCACTCAGCATCGAACCGGATGATGGTACTATCGAACCCAAA
TTTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTGTCGG
TCGGTGGATGATGGCTGTGATGTCAAGTGATTCGTCAACGTTTCCAGTTA
TCGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGTGAAG
GTCAATTTATTACAGTCCTCGTGATCAGTAACCGTATTATCAGTTCGTTC
GTAATTACCTGACGCCTCAAAGATATTGTTGTTGTCAACAGTCTCGTCGG
TTGGATGGTTGTCACGGAGCAACCCTGTCGCTGTACTTGAGTCGTCAACA
CTGTCAGGATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGTATTTAT
GTCATCAGTATTTGTTGTTAAgtcatttgttttgttttggtcaTCAGTAA
TCATCGTAACGTCAAAATCATCAGTATCTATTGTATTTGTGTCCTGGTTT
TCCGCAATTGTCAAAGTCGAATCGTCTCGGTCAACTGGTTTTACTGTCAA
GTCGCATTCGTCAGAAGTTGTCAAGGTGCAGTCGTCAGAAGTTTTGTCAG
CTGGTTTGGATGTGGCGGAGGATGTGTTCTTCACAAAATCTGGTCGTTTC
TCTGTACACACCACTGAAAACCCAGAAGACTTTGGTTTTGCTGCAGGTAA
GCccaaattaacttttttgaaaacgaaagagtTGACATTGGCCATCTTCT
CTGTCGAAATAATGTCTGTTTGTGGCTATGAaggaaaaaaagttcaattt
caaTATCTTTCTCAAGTTTGCTAAATATCTTAAGTGTTACCAACTGtttc
aatgttttcaattttggcctttttcacaAAGTTTTATGTTGATTGTtggg
aaaaaaaatattcactaAATTGAAAGTCTGAAAATGTACATTAAATGAAC
TTTTTGGTTAGAATTTATTTTGCCAAGTTAATTATTTCACTAATGCCAAG
TAAGTTCTCCACaaaatttatcttattttttattccaaaaaatacCAGCG
TTTTCTTTTGTCAAGAGCATTTAAATATTTACAACATTTTCCATTTCTCT
AGTATGCGGCagaaggaaaataaaaaaagtcagcatgagaaagtcaaaaa
ataaacGAACAAATATGATTTCTTTCAATTCAGTCTTTTTCTCCTTACAC
tacttttttcctctttttcagCCTTAGATATTGAAATTGGGTCGTTTGCT
AAAATTAATTCTCACCaaatttaataatttgattaaatCGCCAAATTTCT
GTCCtaattgcaccaaaattggcAATGGGCTCgattgccaaaatttcttc
ttgcaaatgaaatttttgtcttTGGAAGGATTAACGGTTTTTTGACATAT
TAACGGAGAGTATAAACAACATACCTTTTGcacttcaatatttttgtcac
gcTTTGATTCTTGCTCTCTGACCTTGTCGACTTTGTTTTTCCTCTTCTTT
TTGTCCTCTGGTTTCTATGAATGTTAATAAGATTTTTTATCACAACTAAG
AAGAAAATAAGTTTAAACTAGCTATCGTGACGTCACCCGAGTTTACTCTT
TATTGTAGAAATTAAGCTAGATTTGCTTGGTACTCACGAGGGAAATGGGT
AGAGCTAATTTTGgcaagaatttaatttggcatgTGACAGGATAAGTCCA
AAGTCAGGgtgaaagaattttaaaatcttaaaaaggtTGATGTCACAAGG
GATTTGAGACATTTAAGGTAAATGTAAAAGCTTTACCTCTTCGGCTTCAT
TCTCtgcctttttctttttggtcacTTTCTTCGTTGGTTTTACTTGTTTT
TTCTTTGTGATTGCCTACACAGAAAGAGGGAAAATCGTATATGATGAGCC
CATGCtttattcttagagattaataaacggggggtcctaatactttaggc
gtacaaactttcgcgagcagaaactttcgcgaggacgaaaaatcgcgaaa
ttcacgacatttactttcgcgaatttaacggaaaaatatttttcgcgagc
atacactttcgcgaatcaagacgtaaaattgagaattttcacatgagaAA
ATGGCTTACGTACACAAGTACTTCTTGGGTTGGCTTGAAacaattgtcct
ttgacttactAGTCtattagcaggctaaaaagtgccacaaaagttacatt
ttattcatattttgtcaagaatttttcgcgagcataaactttcgcgaatg
gcccttcctagaatttttaaagacatttactttcgcgaaaagggccaaaa
ttcgcgaaAATCGCGAAAGTTTCTGCTCGCAAAAGTTTCTACGCCTAAAG
TAGGGTCTGGGGGAGTTGGTAATTTCCGAAAAGTTAACAAgtgggggcgt
ttatttggaacctaagagtaatcgcgccatccagtctatcaaaaagctta
aAGTGGACCCCAGGCTAGGGGTATTTTagacattgagtttcaagcccgaa
gggctagaggtcaatctctaacctttctcaggcaagaaaaattggagcct
taaaatatgcgccgtatttttgatgaccaattgaatctagcaattccttt
gtctttgagtgatatatttttcgaaattaagcggtaaattttagtttcaa
tctgtcatttgtgtaaaaaccaggcaggttgctcaaggccgcgcaacttt
ggtaggatttgttggcttcaaatcctaccaaagagattgacctctagcct
tcggcttgaaactcaatgattttAGAGCCATCTGATCTGTCCCAGGGAAG
tttactgctcaaaataataatttctgGTAGCTCAATCCCTGGTCTatcca
tttgaagtgattgcaataaaaaaattcaatcctACAGGCCCAGAAGGCCA
Attaggtctcaaaaaagtaccaactttaggccaattttcctagaaatggg
ctcttccagaaaaaaattgtacatgggggtggcggatataacaattttta
gtgactTACCCCCCGAACTGGGTGACTTTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcccccccccccctggacaagcatctgctgacccctgga
cagagcaaatttacccccggacaaggcaattttcgatgattttttgacag
attgaaactaaaatttaccgctaaatttcgaaaaaatcatcaatcgtaaa
caaaagaattgctagattcaatctgtcgtaaAAAAtgcagcgcatttttt
aaggcttcactttttcttgccggagaaaggttagagattgaactctagcc
cttcgggctttaaactcaatggtttaaACCACCTCTCGTACTTTggcata
attttttattcagaaaactgaaaagtcaatttttttgaaattttccattt
tgaataGCATTCTAGTGAAGTGATATCTTTTTcaaatcagtttttcatgc
ttaTTCTGAAGTCATTTTTGGCCCCtatgtaaattcctaacttgtatcac
tttgattttttaaatctcccccaactgtccccccccccccttttttttta
aNNNNNNNNNNaaatcagtttttcatgcttaTTCTGAAGTCATTTTTGGC
CCCtatgtaaattcctaacttctatcactttgattttttaaatctccccc
aactgtccccccccctttttttaaagcaaaacgcTTGTAAACAtacgaag
gctcagatttgcagatatcctaagcataacataagcatatatgcTAGCCT
GAAATATTGGTCAAgtaaaaaagacattccacagttagccacattccact
gctcaaaaatttaaatgctttttgaatcgaatattaacaaaattttaaag
attttatttaaaaatttggttgggtgaatcaaaagaataataattcttaa
gcatataataagcatattcTATGTCTGGATGCTATATATGGCCAAGATAA
AGTTTTTCAttcaataaattaaaaaatcagaTTTGAAAGACTACCTTCGC
TGACAGGAGCttaaacagggggggggtcagggtccaggatgataccaacc
cagggcccaaaaacctgacttttaaagatttgaaagtagtagacaccacc
accccctaaattggtatcaataccaacttgaaaaccccaattttctaaaa
aaaggggggacccacccccataAATTGgaatcgataccaacatgaaaatc
ttgattttctgaaaaaggggggacccaccccctaaattggtatcgatacg
aacttgaaaatcccgatttttcaaaaaaaaggggACCTTCCCCCCCCTAA
ATTGGCAATCAGTAAAAATGCAAGAAGTTTATATGCATGGGATACTAAAA
TATATTCacaataagtgtgcactcttttacATTTAAACTTTGTGTCATAA
CTtgatattgaataaatattttagtaaaatttcttcataatgatgacctc
ctaagatcaaagaatctctccagtgaaaatgaaagttatagcacttttct
acaagatcttcatttttttcttctttattttcatattcGTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGaggacccaccccctcattt
tggtatcaataccaacttgactttttgaaatttgaaaaaaaaaattgaca
ccacccCCCGGCCCTGGGTTTGGNTGACAGGAGCTTAAAACAAACTTATT
TGAAGTTCTACTTTAGTGTTTCAACTAGATACTTCCTCTCTCAAAATGAG
CTAGGCTCCCCTAACTAAGAAAGAAGACCTTTTAATAAAttgtcacgaac
atcacttgccttgtattcaaaaaaatacaattgTGATTATGTAtaatgtc
tcttgagacattaaaagGTTCTTTTATGCATAGAAAGTAGTAAAATCCAC
AGGGAGTCAattaccatggcaataatttcaaaacgaggcaagtgatgttc
gtaacgtaatttatgaaaaggcctattgaTATCGCATgttttttaatatg
tttttatttttctacagGTGACGAGAAGAAAAGGACTTCGATCTTATCAA
CCAGAATGGGGGCGGTTCAGTGTACAATACAGCGATATGTTTTGGAACTG
TGCAGCACTTTCCACCCACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00042731TCONS_00042731Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003636supercontigsc0003636:2013..9582 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.33	0.15	0	0	0.55	0.78	0.74	1.17	1.56	1.14	1.1	1.55	2.51	2.76	0.39	0.27	0.13	0.04	0	0.04	0	0.11	0.64	0.8	2.44	3.52	0	0.06	0.22	0.88