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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042417 ID=TCONS_00042417|Name=TCONS_00042417|organism=Clytia hemisphaerica|type=transcript|length=1407bp
TCTGATATATGTTtgtatatcagagtttagatgcaaatggtttgttttga
tatatatcCGGACTCTTGAGACAGCCTCACTCTCATGCCTATTTAAGGCC
TCAGTTCTTCCACATGgacctttttcagttcttcatttgCCTAGTGCTGA
CTGCTGTATTTTTGCTGTTTTATATCCTGTGCTGTGGTGCTGTGCTTCTA
ATCAAATCATGCTATCTCAAAGACTGTTTTTTACTATCCTGATGTTCCTG
ACCACCCCTCCTCTAACTCCTACCCCAGCTGCTGAGGATGACACCACCAA
TGCCACCAGGAAAAAGAAATGCCCTGGATGCCAGAGAAATCATGATATTC
ATACCTTTGGCCCACCAGGTAGGAATTGTCAAGGCCCTGTTTCACCAAGC
TCCTCCACTCATTCTCCGAACAGAACACGGTCTAGTCGTGTTGCTAGTCC
AATAGACTCTGGGAAAAACCCCAACGCTGGGGCCATGTCGGATGAACAGC
TGAACCAATACCGCCAACACTTacaacttttgaaaaatcaagagTCTGAA
CTTTTGGAATCGATTAGACTTGAACAGGAAAACTATTTAAGGGAAGAAAA
CACCCTTAAAGATGAAATCCAACGTCAAACTGAAAAGCTTGAACGTCTCA
AGGCTGCAAGAAATCGCCCATCTCGTCCCGCCACACCGCCTGCGAACCAA
AACAATATTTCACGCTCAGGGGAAACCCGTTCTACGgaatccgccatctt
taattcGTCTGATAACATGTCTACGTTACTTCATCGCCCGCTTCTTTCAC
ATCAACAAACTTCTGCTGGTACTTCGTTTGGTTTTGCTGCTACTGGTGCT
ACTGTTCCCTTGTTGAATTCTGGTTTGAATGGTCAAGATCCTTCCTTTGT
CAATCGCCGATTTACTCAAAATGAACTTTTCCTGCGCCCAACACGTACAA
ATGACATCACTAGAGACTTTGCGTCTTCACTGCTGGCAGATGTGCAGTTC
TATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACGCA
CCGTAAGGTCTATCTTCAGTTTTGTCATATGTTTGACATTCAACCAGCTC
CGGCTGACTGCATTCACATCTGTATGTATGCTGCCTACCTTGCTAGGTTC
CTGTTGCCGCAGTCTGTTTGTgtttatttgaattttgttgGTCTGCTGCA
CCGTGAGATGGGTTTCCCGAACCCTCTTCTTGACAACTGGTTCCTTTCCT
CTGTGCTCAAGGGTATCAAGCGTTCCAAGGGTATCCCTCCCGTTCCCAAG
CTCCCCATCACAGTGGATATCCTTTCCTTCATTCACTCCCAGCTCAACCT
TCTGGATAGCAAGCAGGCTTCTTTTTGGGCTTTGTGTCTTGTTTCCTTCT
TTGGGCT Run BLAST on NCBI protein sequence of TCONS_00042417-protein >TCONS_00042417-protein ID=TCONS_00042417-protein|Name=TCONS_00042417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
LIYVCISEFRCKWFVLIYIRTLETASLSCLFKASVLPHGPFSVLHLPSAD
CCIFAVLYPVLWCCASNQIMLSQRLFFTILMFLTTPPLTPTPAAEDDTTN
ATRKKKCPGCQRNHDIHTFGPPGRNCQGPVSPSSSTHSPNRTRSSRVASP
IDSGKNPNAGAMSDEQLNQYRQHLQLLKNQESELLESIRLEQENYLREEN
TLKDEIQRQTEKLERLKAARNRPSRPATPPANQNNISRSGETRSTESAIF
NSSDNMSTLLHRPLLSHQQTSAGTSFGFAATGATVPLLNSGLNGQDPSFV
NRRFTQNELFLRPTRTNDITRDFASSLLADVQFYREATYAVNTRKAYRTH
RKVYLQFCHMFDIQPAPADCIHICMYAAYLARFLLPQSVCVYLNFVGLLH
REMGFPNPLLDNWFLSSVLKGIKRSKGIPPVPKLPITVDILSFIHSQLNL
LDSKQASFWALCLVSFFG Run BLAST on NCBI transcript from alignment at sc0003411:3570..7718+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042417 ID=TCONS_00042417|Name=TCONS_00042417|organism=Clytia hemisphaerica|type=transcript|length=4149bp|location=Sequence derived from alignment at sc0003411:3570..7718+ (Clytia hemisphaerica)
TCTGATATATGTTtgtatatcagagtttagatgcaaatggtttgttttga
tatatatcCGGACTCTTGAGACAGCCTCACTCTCATGCCTATTTAAGGCC
TCAGTTCTTCCACATGgacctttttcagttcttcatttgCCTAGTGCTGA
CTGCTGTATTTTTGCTGTTTTATATCCTGTGCTGTGGTGCTGTGCTTCTA
ATCAAATCATGCTATCTCAAAGACTGTTTTTTACTATCCTGATGTTCCTG
ACCACCCCTCCTCTAACTCCTACCCCAGCTGCTGAGGATGACACCACCAA
TGCCACCAGGAAAAAGAAATGCCCTGGATGCCAGAGAAATCATGATATTC
ATACCTTTGGCCCACCAGGTAGGAATTGTCAAGGCCCTGTTTCACCAAGC
TCCTCCACTCATTCTCCGAACAGAACACGGTCTAGTCGTGTTGCTAGTCC
AATAGACTCTGGGAAAAACCCCAACGCTGGGGCCATGTCGGATGAACAGC
TGAACCAATACCGCCAACACTTacaacttttgaaaaatcaagagTCTGAA
CTTTTGGAATCGATTAGACTTGAACAGGAAAACTATTTAAGGGAAGAAAA
CACCCTTAAAGATGAAATCCAACGTCAAACTGAAAAGCTTGAACGTCTCA
AGGCTGCAAGAAATCGCCCATCTCGTCCCGCCACACCGCCTGCGAACCAA
AACAATATTTCACGCTCAGGGGAAACCCGTTCTACGgaatccgccatctt
taattcGTCTGATAACATGTCTACGTTACTTCATCGCCCGCTTCTTTCAC
ATCAACAAACTTCTGCTGGTACTTCGTTTGGTTTTGCTGCTACTGGTGCT
ACTGTTCCCTTGTTGAATTCTGGTTTGAATGGTCAAGATCCTTCCTTTGT
CAATCGCCGATTTACTCAAAATGAACTTTTCCTGCGCCCAACACGTACAA
ATGACATCACTAGAGGTAAAGCATTACGTATTGTAGACTTTGTTTCCAGA
ATTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGACTCGGCAGGAATGCCAAGCTGCTTTTGATAC
CCTTCACTCACTCCTGATATCCCTAGGTTTCACTATCAGTCCTTCTAAGC
TTGTTTCGCCTTGTCAGAAACTTGTGTTTCTTGGTGTTGAGATTGATACT
ACAATATTGACTCTCGCACTTCCTGCCAGAAAGCTAGGTGACCTGCGAGA
CGTCCTGATGTCTTTTCANATGTTGTTGCTGATCATGTCTCTCGATTGCA
TGAACACAAACATCTTGCGGCTTTTCTCCAGTATCTTTGTGACCACTTTT
ATCAGTTTGCTTTATCTGATGACATTGTCTGGCACATGTCTGAGAACTGT
TTCTTGTTTCTTCTTGGTTTGTATGGGTCTGGCTCATGCCTTCACTCTGC
CTTTTAGACTTTGCGTCTTCACTGCTGGCAGATGTGCAGTTCTATCGTGA
AGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACGCACCGTAAGG
TCTATCTTCAGTTTTGTCATATGTTTGACATTCAACCAGCTCCGGCTGAC
TGCATTCACATCTGTATGTATGCTGCCTACCTTGCTAGGTTCCTGTTGCC
GCAGTCTGTTTGTgtttatttgaattttgttgGTCTGCTGCACCGTGAGA
TGGGTTTCCCGAACCCTCTTCTTGACAACTGGTTCCTTTCCTCTGTGCTC
AAGGGTATCAAGCGTTCCAAGGGTATCCCTCCCGTTCCCAAGCTCCCCAT
CACAGTGGATATCCTTTCCTTCATTCACTCCCAGCTCAACCTTCTGGATA
GCAAGCAGGCTTCTTTTTGGGCTTTGTGTCTTGTTTCCTTCTTTGGGCT Coding sequence (CDS) from alignment at sc0003411:3570..7718+ >TCONS_00042417 ID=TCONS_00042417|Name=TCONS_00042417|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at sc0003411:3570..7718+ (Clytia hemisphaerica)
CTGATATATGTTtgtatatcagagtttagatgcaaatggtttgttttgat
atatatcCGGACTCTTGAGACAGCCTCACTCTCATGCCTATTTAAGGCCT
CAGTTCTTCCACATGgacctttttcagttcttcatttgCCTAGTGCTGAC
TGCTGTATTTTTGCTGTTTTATATCCTGTGCTGTGGTGCTGTGCTTCTAA
TCAAATCATGCTATCTCAAAGACTGTTTTTTACTATCCTGATGTTCCTGA
CCACCCCTCCTCTAACTCCTACCCCAGCTGCTGAGGATGACACCACCAAT
GCCACCAGGAAAAAGAAATGCCCTGGATGCCAGAGAAATCATGATATTCA
TACCTTTGGCCCACCAGGTAGGAATTGTCAAGGCCCTGTTTCACCAAGCT
CCTCCACTCATTCTCCGAACAGAACACGGTCTAGTCGTGTTGCTAGTCCA
ATAGACTCTGGGAAAAACCCCAACGCTGGGGCCATGTCGGATGAACAGCT
GAACCAATACCGCCAACACTTacaacttttgaaaaatcaagagTCTGAAC
TTTTGGAATCGATTAGACTTGAACAGGAAAACTATTTAAGGGAAGAAAAC
ACCCTTAAAGATGAAATCCAACGTCAAACTGAAAAGCTTGAACGTCTCAA
GGCTGCAAGAAATCGCCCATCTCGTCCCGCCACACCGCCTGCGAACCAAA
ACAATATTTCACGCTCAGGGGAAACCCGTTCTACGgaatccgccatcttt
aattcGTCTGATAACATGTCTACGTTACTTCATCGCCCGCTTCTTTCACA
TCAACAAACTTCTGCTGGTACTTCGTTTGGTTTTGCTGCTACTGGTGCTA
CTGTTCCCTTGTTGAATTCTGGTTTGAATGGTCAAGATCCTTCCTTTGTC
AATCGCCGATTTACTCAAAATGAACTTTTCCTGCGCCCAACACGTACAAA
TGACATCACTAGAGACTTTGCGTCTTCACTGCTGGCAGATGTGCAGTTCT
ATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACGCAC
CGTAAGGTCTATCTTCAGTTTTGTCATATGTTTGACATTCAACCAGCTCC
GGCTGACTGCATTCACATCTGTATGTATGCTGCCTACCTTGCTAGGTTCC
TGTTGCCGCAGTCTGTTTGTgtttatttgaattttgttgGTCTGCTGCAC
CGTGAGATGGGTTTCCCGAACCCTCTTCTTGACAACTGGTTCCTTTCCTC
TGTGCTCAAGGGTATCAAGCGTTCCAAGGGTATCCCTCCCGTTCCCAAGC
TCCCCATCACAGTGGATATCCTTTCCTTCATTCACTCCCAGCTCAACCTT
CTGGATAGCAAGCAGGCTTCTTTTTGGGCTTTGTGTCTTGTTTCCTTCTT
TGGGCTGATATATGTTtgtatatcagagtttagatgcaaatggtttgttt
tgatatatatcCGGACTCTTGAGACAGCCTCACTCTCATGCCTATTTAAG
GCCTCAGTTCTTCCACATGgacctttttcagttcttcatttgCCTAGTGC
TGACTGCTGTATTTTTGCTGTTTTATATCCTGTGCTGTGGTGCTGTGCTT
CTAATCAAATCATGCTATCTCAAAGACTGTTTTTTACTATCCTGATGTTC
CTGACCACCCCTCCTCTAACTCCTACCCCAGCTGCTGAGGATGACACCAC
CAATGCCACCAGGAAAAAGAAATGCCCTGGATGCCAGAGAAATCATGATA
TTCATACCTTTGGCCCACCAGGTAGGAATTGTCAAGGCCCTGTTTCACCA
AGCTCCTCCACTCATTCTCCGAACAGAACACGGTCTAGTCGTGTTGCTAG
TCCAATAGACTCTGGGAAAAACCCCAACGCTGGGGCCATGTCGGATGAAC
AGCTGAACCAATACCGCCAACACTTacaacttttgaaaaatcaagagTCT
GAACTTTTGGAATCGATTAGACTTGAACAGGAAAACTATTTAAGGGAAGA
AAACACCCTTAAAGATGAAATCCAACGTCAAACTGAAAAGCTTGAACGTC
TCAAGGCTGCAAGAAATCGCCCATCTCGTCCCGCCACACCGCCTGCGAAC
CAAAACAATATTTCACGCTCAGGGGAAACCCGTTCTACGgaatccgccat
ctttaattcGTCTGATAACATGTCTACGTTACTTCATCGCCCGCTTCTTT
CACATCAACAAACTTCTGCTGGTACTTCGTTTGGTTTTGCTGCTACTGGT
GCTACTGTTCCCTTGTTGAATTCTGGTTTGAATGGTCAAGATCCTTCCTT
TGTCAATCGCCGATTTACTCAAAATGAACTTTTCCTGCGCCCAACACGTA
CAAATGACATCACTAGAGACTTTGCGTCTTCACTGCTGGCAGATGTGCAG
TTCTATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTAC
GCACCGTAAGGTCTATCTTCAGTTTTGTCATATGTTTGACATTCAACCAG
CTCCGGCTGACTGCATTCACATCTGTATGTATGCTGCCTACCTTGCTAGG
TTCCTGTTGCCGCAGTCTGTTTGTgtttatttgaattttgttgGTCTGCT
GCACCGTGAGATGGGTTTCCCGAACCCTCTTCTTGACAACTGGTTCCTTT
CCTCTGTGCTCAAGGGTATCAAGCGTTCCAAGGGTATCCCTCCCGTTCCC
AAGCTCCCCATCACAGTGGATATCCTTTCCTTCATTCACTCCCAGCTCAA
CCTTCTGGATAGCAAGCAGGCTTCTTTTTGGGCTTTGTGTCTTGTTTCCT
TCTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042417-exon-sc0003411-1491911889:3570..4534 | TCONS_00042417-exon-sc0003411-1491911889:3570..4534 | Clytia hemisphaerica | exon |
| TCONS_00042417-exon-sc0003411-1510915933:3570..4534 | TCONS_00042417-exon-sc0003411-1510915933:3570..4534 | Clytia hemisphaerica | exon |
| TCONS_00042417-exon-sc0003411-1575043694:3570..4534 | TCONS_00042417-exon-sc0003411-1575043694:3570..4534 | Clytia hemisphaerica | exon |
| TCONS_00042417-exon-sc0003411-1491911889:7277..7718 | TCONS_00042417-exon-sc0003411-1491911889:7277..7718 | Clytia hemisphaerica | exon |
| TCONS_00042417-exon-sc0003411-1510915933:7277..7718 | TCONS_00042417-exon-sc0003411-1510915933:7277..7718 | Clytia hemisphaerica | exon |
| TCONS_00042417-exon-sc0003411-1575043694:7277..7718 | TCONS_00042417-exon-sc0003411-1575043694:7277..7718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003411 | supercontig | sc0003411:3570..7718 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR023109 | Integrase_recombinase_N |
| IPR010998 | Integrase_Lambda-type_N |
Blast
The following BLAST results are available for this feature:
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