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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042407 ID=TCONS_00042407|Name=TCONS_00042407|organism=Clytia hemisphaerica|type=transcript|length=457bp
AGAGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTGCACAAC
AAAAAGTGCAATAATGGAAAAGCTGATCTTCATTGGTGTCATTCTTTGTA
TGTGTTGCCCATGCGCAGATGCATACAAATCACCGTACATTTGGGGGGAC
CTTTATCATGGTAAATTTATTGGCTCTACTATATATTGTAATCCAAAGCC
ATACGTCCCCGGTGGTGGTATACAAACGATCCAACAAATTAAGGCTCCCA
AAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTTTTCAGCAGGTACC
CAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCATTGGAGAAGGGTC
gtccaaaataaaaaacattcaaaaactttttaatacTGCTTCAAAGATGG
CATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTATCTTGGAGGTGAA
CCGAGTG Run BLAST on NCBI protein sequence of TCONS_00042407-protein >TCONS_00042407-protein ID=TCONS_00042407-protein|Name=TCONS_00042407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
RALRFAKKTDKVEVCTTKSAIMEKLIFIGVILCMCCPCADAYKSPYIWGD
LYHGKFIGSTIYCNPKPYVPGGGIQTIQQIKAPKATLEENEVLSGFSAGT
QGTGFIAGLTGFIGEGSSKIKNIQKLFNTASKMASTMWFVSGILSYLGGE
PS Run BLAST on NCBI transcript from alignment at sc0003401:4944..12115+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042407 ID=TCONS_00042407|Name=TCONS_00042407|organism=Clytia hemisphaerica|type=transcript|length=7172bp|location=Sequence derived from alignment at sc0003401:4944..12115+ (Clytia hemisphaerica)
AGAGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTGCACAAC
AAAAAGGTAAGTCTACTTGTATCCTGCTCACAACAGACAAACATTCTAAG
ACCCTTTTCAAAACCCCCGCAGCTGTGGTAACTATTTTGATCCGCCCAAT
CGTTCCCCGCAAACAGTGCAACCATTTTAGGCATAGTGGGCTTGAAAAAT
TAGATTTCGGTACATAGATTTATATTCCAGTTTTTATTTAAGAGTTCAGT
GGGGGCGCTATAGAGGTTCTTCACATTTtgctaagttacgtaatttccgc
cattatggaagaaaacattcgattttgtAGAGGCGATCCCTTACGCAATT
CGAACGTTTTACACCATAATGGCGGAAACTAAGTAACTTAATGAAATGTG
AAAAACCTCTTGTGCGAGATTGTTGGCTAAGATTACAAAATAATCAGATT
GTAGAGTTGATAATTTTTGCAGACTCAATACATTTAAGTGTATTTAAAAA
GGGGTAAGCGGATTATTAAGCCCGGCAAATTATTTCTTACATTCATAACC
ACTTACACCATTGGAAAGCCCTCAAAAAAACGATTTacccaaaaaattga
atttttttaattgataccttctctttttttgttaataactcccgagaaaa
attttttaaccctTCGTGCACCTGGGGCTAACGTCATTgctacctgatga
cgtcatccatTTTTGACACCTCCAAAGATAGGACCCCCCTCTAACACttc
tatattttttgttcaaattttgtaCGGAAACTCCATTTGACATTTATACA
AGGGGCACAGGGTAGTCCAGGGGAATTTAGGGTTGACCCAAAATTTGCGT
ACACatggaattttttgattgaaatgtgttcattaGGTCCCTAGGAGTGA
AAAACCGTTGCGTGCTACTTTGCACACTTGGGCATTTTCCATAACggcgg
aaatttcaaaatggcgaattttgaaattttttgaattgttgatgTCTTCG
AACATAGGCATAATATATACcgtttgaaagaatttttcacgctgaacaac
ttttttgcctacaaaaaagtctgaaaatgtactcaatgtgGGTAAAAAGC
GATAGAAAGTGTCAAAATAACGTTatcattttcccaaaatttgacatttg
ttCCAAACTATTGagtgttatataccgttgaaaaggatttttcatgttta
acttttttactttttcaaaaaagtttgaaaaaattactCAATGTGAGTGA
AAAGTAATAGAAGGTGTCAAAATAACGTTCATTTCTCCAAAGtttggcta
aaatattaagtGTTATACACACCgttgaaaaggattttttatGCTGAACA
ACAAGATGTACTTAGTGCAAGTAAAAAGCGATAAAAGGTGTCAAAAATTA
CGTCTAAAATGCTGAAATTTAATAAATCTGATAAATATTCCAAATGCATG
TTTTGAAAGAAACAAGACGAcctgaagtcgaaaatttcgcctagaatttg
aactgcatgggaaaaacaagaagtagagattgaagctaatctgaaatcta
ctttaaaTAGAGcattgatgaaacaattttacaagaacaacgaggcttaa
aatcgcttaaaaaaataaaaccaatttaagaacaattgttgttaaatttt
taagaactcttataaagtgtatgcttataagaaaagtaaatatgctcata
ttgtacgccaacccttgtttactttgtaagaactaataaccaaaaggtat
atcaccgtctatcaagagttattgatttgattcttataaagtacatgctt
atgagaaaaataaatatgctcatattttgcaccgtcctttgtttactttg
taagaacttattaccgaaaggcatatcactgtctatcgagagttattgat
tcgattcttataaagtaaatgcttataagaaaaatgaatatgctcatcgT
GTGTGCCGTCCCTTgcttactttgtaagaactaattccGAAAGGTATtgg
tttgtttcttataaagtaaatgcttataagaaaaatagatatgctcatat
tgtgcgccatcccttgtttactttgtaagaactaattataCCGAAAGGTA
tttcaccgtctatcaagagtaaatgatttgattcttataaagtatatgct
tataagaaaaatcaatatgctcatattgtgcgccatcccttgtttacttt
gaaagaactaGTTACCGAAAGGTggatcaccgtctatcaagagttattga
tttgattcttataaagtatatgcttataagaaaaataaatatgctcatat
tgtgcgccatcccttgtttactttgtaagaactaattataccgaaaggta
tatcaccgtctatcaagagtaaatgatttgattcttataaagtatatgct
tataagaaaaatcaatatgctcatattgtgcgccatcccttgtttacttt
gaaataactagttaccgaaaggtatatcaccgtccatcaagagttattga
tttgattcttataaagaaacgcCCATTTAAAAAACGCCCACACGCCTATA
TTATTGCGCCCCAATAATGTCTCGCCAGCCAGACACATACACGGAAGgcg
atcgtaatactttcgctaagcgaaattaataagtTCTCATTAACTAAATG
CCCTGACTTTAGGCCGAAGAGATTCTAATGGTTTAAACGCTGCAGACAAC
CTCTTTTTTGTTCGCTTGACCCACATGGAGAATCTACCTTTTTGAGAGAT
TGACTTCATTCAGTTTTATTCCGTAGCAGGCAGCAATGAAATAGATTCTT
TCTTGAATGATTGAATCTTCGGTATATGTTCGGAATAGTAAATGACCGAC
TGAACCACCTCTATGGGTGCTATCAAACATTATACATGGCTCAGGGTCAG
TTCCACACCTAGGTTGCTACTCTTGGTATCCAGTTCAAAACTTGTGAAGT
GACGTAAAATGAATGGAATAATATCCTTATTTGTTAACAAAAGCCTTCGA
CTCAAAGGAATAGACAAACGACACAAGGAAAGATAACAAACATCTTTGAA
GTTTATGGGATTCCTTATCCAATCATTAATTCAATCTTGGCACATTACCA
CGGAACAAATGCCTTCGCCTGATAGAGATACAGATCCCTTTGATATAAGT
GATGACACCTTTTCTATTTTATGTGGCTATGATATGTACTGGTGAAGACT
TCTCTCAATCGTCACTTAACCAGAAGTCTATACTACACCTCCTAGATGCA
GTACAAACACAGGCTGAGCTTCGAGTAGTGCTGAACATCTCCTGGCGTGA
ACATCCAACTACATAGCGCTTCTATAAAAAACTATCTACTAATTCTTCTC
AAACCATTATAAAATTTCGTATCACATGCTTGCCTGTGACTCGAACATGA
GTAAAGACAAGCTTGCCAGTGAAGTTATCACCTCGTAACCAAAACAGGAA
AGAGCAAATGTTGGAAATAGACCACACTAAACTTACTACCAACTACATAG
TATTGAAGACACTGGCTGTAAAACCAACGAAATCGAAATCACTGAACGCG
AAACTCTGATGGCAGACAGGGATGTATGGAGATAGATGATCAGATTGTCT
AGTTAATCAATAACCCGTCCGTCGTGTAAGGGTAGTGATAGTGTTTAGTA
TTGCCTGGCTGTCATATGTACAGAAAGATTACACAACCAGATGCCCAGGA
GTTGCTGACGTCACAATGTCGGCTTGCTTTATAGTtctttggttgatttt
gatGAGTATCTGAAAAGGATTTCATAAGAAATGGTGATCGCACTGAGTAT
TTATGGACAGGATGATGTTAGCAAGACAAAAATGTCCTCAGTATTATGAC
ATACAAATTTGATGGGGGACTTTCGTTCCTCTTCCCAATTTACGATACTC
AGTTGTAATGATGTCTGCTCCCTTTGTAAACGATTGATAACATATACTTA
TATGATACTTAGATACTTTCATGCTATGATAGCAGGAAGCTTGTAATCCT
AGGAGGGAACATTGAGTGTCAAAGTAGTAGTGTAGTAGTAANTCAGGAAG
CTTGTAATCCTAGGAGTGGAACATTGAGTGTCAAAGTagtaatacaataa
tgaccggttagtgagggttgtactgagaaatattgcccgaggtcaagaaA
CGACcaagcttgcgaggttgttgtgTTGACcaagggcaatattttcagta
cagcccgaaaataaccggtcattattgtatttgttaaccgtttccttcag
cttcgattgatttttagcgctttatccaggaaaaatagcaaaataaagcg
aaaaaaaatatgcgaaaagagataaaaattgttataatttctgaccACAG
AAATAAAAANCatgcgaaaagagataaaaaaaatttataatttctgacgt
cagaaataaaaaaatgagagaaatgatgtcaacgcattgttcattttcct
ttgaaaaagtgacatcacaatgaattttcctaacgacgggcaactctgga
cagtctaggcccgtcgtcatgcaaaaagtaccaattgcattgcgcaaaaa
gccgtgtagctcGCTTTGAAAAAGTAGTCGGTTAACAATGTTCAGTGATG
CCTAACACTTGCATTTTTCAGAAGtaaaaattatgacgtcaattATATAT
AGCTTCTTCTGTTTTTTACTCACATTGAGTAAATTTTTAAACTATTTTGT
AAGCAAATAAGTTGTTTAGCATGAAAaatcctttccaacggtatataaca
ctCAATAGTTTAgagcaaatgtcaaattttgggaaaacgatgacgtcatt
ttgacaCCTTCCATCGTGTTTTACTCACATTAAGTACATTTTCAGACTTT
ctcgtaagcaaaaaagttgttcagcgtGAAAAATACTTTCcaatggtata
taatatgcctaTGTTTGAAGACAAAGTGTGCAAAGTGGCCGGCGGTTTTT
CACTCCTAGGGACCtaatgaacacatttcaatcaaaaaattccatTTGTA
CGCAAATTTTGGGTTCCCTAAAAAGAGCCAGAAATTCCCCCGGACTAAGG
GTCAATTTTGCCCACCTGCCATAggcgtgtattttacagaccggcccaaa
tttgcctaaattAGTCCTAAATTTTTATATCTCAAGATTGGAAAATGCTA
TTGTCTTGAAATTTGATCAGTGGTAGGTATTGATAATGGAAACTTGCTCT
CAAAATTTTAGCGAAATCGGACCATTAGTTATGCAGAAGGTGAGCATTTA
AGGTAAAATACTGAccgttctgtaaaataccaaccgcACAGGTGGccgac
ttgaaattttgcacattgtCTTAGATGGTCAAGACCtatcactggtgaaa
atttcaagtcctTGAGTTCCGGAAAAGGggggtgtgtattttacagacca
gtctgtaAAGTACCAAATACCACCCTGGAACTATTCTTTTTCGGTTTAGT
CTGATTGGATTTGGCAAATACACGCAATTTCAACGAAGCCAATTGGATAA
TTCATTCTAGCAGCTAATTtattattctggtctgtaaaataccaactaaA
CAGGTGGCCGACCTGAAAATTTGTAAATCATCTTCATTTGTCAATATCTG
TCACTGGTGAAAGTtcatagcacttgtcaatcttgagatCCGAGGGGCGG
GCTAACATGCCCCTCAAGATGCTCTGCATataaaaaaataggaagatgca
CGAAGGGTTAAACAATAAAGCTGTGTGTCCACTGAAATTAAGCTATTGCA
AATAGTTTGCAATGAATAAATTTCTTGTCGCGAATTCTTTATCGCAAGCA
CGTGTTCACAATGTCcatctaaaaaataaatatttacgaAATATTTCGGC
GATCATGAAAATAAGTTTTGTATTTAACTCTTTCCGTTAGTTTTTTAGAA
CTTCCAACTTCAGATGCAATTATCTCAGCTTCCGAGCAATCTTAATATGT
GTGGGTTTGTTGCAAAGCTCTTTTCATGCTTTATCTTTTCAGTGTGCCAG
ATTTTTTAATTAGGTCCTCAAAAATAATTAGGGCAGCCGAAAAATATCGT
TCCAAATTGAACGAAAGTAGCTGGGGCCGACAGGAAAGTGTTAAAAGAAA
TGTGTTCAAAAAAGATGTATCTTAACTTATCTCCATGGTAAcacaaaata
caaatttattaaaaacaaaCGCAAACCGCAAACGCAttgaaaacgttttc
attttcTATTGCCAATTATTCGGAATTAATTTTGATTCTAAGACAAAAAA
TATTTAGCGATGAAATGTGtccactggaatttttttttcgatggaCAAAT
GTTTTCGCGATGATCATTTGCGACGGACATATTTTCTTTCAGTGGACACG
CAGCTTAATTAAAAGTATATATTTCCTGAAAGATCATGagatttcttaaa
aatgatgGTGTTCATTAAAATCCTATCTGGTATACTGAATAGGAGCAATT
ATTAAGAGACCAAATTTTGACCTAGTTACATTCAAAAGAGATGAATTCAC
TCATAGCTTTCCCAACtggcacacagcgttgtttcaacgttcatctagca
TCCagaacgttcatttaacgttagatgaacgttaaaacaacgttgtgtgg
caGCTGGGTTGAGCTATCTATATGATTACTAAAAAGTAAACCCTGGCACT
TAAAGGTTTAATTCTAATCAACTCATTCGATCTTCCATACAGTGCAATAA
TGGAAAAGCTGATCTTCATTGGTGTCATTCTTTGTATGTGTTGCCCATGC
GCAGATGCATACAAATCACCGTACATTTGGGGGGACCAATACTCTGGTGG
ATTTGTTGGCTCTACCATATATTGTGATCCAAAGAAGCCATNAATCACCG
TACATTTGGGGGGACCTTTATCATGGTAAATTTATTGGCTCTACTATATA
TTGTAATCCAAAGCCATACGTCCCCGGTGGTGGTATACAAACGATCCAAC
AAATTAAGGCTCCCAAAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGT
TTTTCAGCAGGTACCCAAGGAACAGGATTTATTGCAGGACTTACAGGTTT
CATTGGAGAAGGGTCgtccaaaataaaaaacattcaaaaactttttaata
cTGCTTCAAAGATGGCATCGACCATGTGGTTTGTCAGTGGAATCTTGTCT
TATCTTGGAGGTGAACCGAGTG Coding sequence (CDS) from alignment at sc0003401:4944..12115+ >TCONS_00042407 ID=TCONS_00042407|Name=TCONS_00042407|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0003401:4944..12115+ (Clytia hemisphaerica)
AGAGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTGCACAAC
AAAAAGTGCAATAATGGAAAAGCTGATCTTCATTGGTGTCATTCTTTGTA
TGTGTTGCCCATGCGCAGATGCATACAAATCACCGTACATTTGGGGGGAC
CTTTATCATGGTAAATTTATTGGCTCTACTATATATTGTAATCCAAAGCC
ATACGTCCCCGGTGGTGGTATACAAACGATCCAACAAATTAAGGCTCCCA
AAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTTTTCAGCAGGTACC
CAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCATTGGAGAAGGGTC
gtccaaaataaaaaacattcaaaaactttttaatacTGCTTCAAAGATGG
CATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTATCTTGGAGGTGAA
CCGAGTAGAGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTG
CACAACAAAAAGTGCAATAATGGAAAAGCTGATCTTCATTGGTGTCATTC
TTTGTATGTGTTGCCCATGCGCAGATGCATACAAATCACCGTACATTTGG
GGGGACCTTTATCATGGTAAATTTATTGGCTCTACTATATATTGTAATCC
AAAGCCATACGTCCCCGGTGGTGGTATACAAACGATCCAACAAATTAAGG
CTCCCAAAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTTTTCAGCA
GGTACCCAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCATTGGAGA
AGGGTCgtccaaaataaaaaacattcaaaaactttttaatacTGCTTCAA
AGATGGCATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTATCTTGGA
GGTGAACCGAGTAGAGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGA
AGTGTGCACAACAAAAAGTGCAATAATGGAAAAGCTGATCTTCATTGGTG
TCATTCTTTGTATGTGTTGCCCATGCGCAGATGCATACAAATCACCGTAC
ATTTGGGGGGACCTTTATCATGGTAAATTTATTGGCTCTACTATATATTG
TAATCCAAAGCCATACGTCCCCGGTGGTGGTATACAAACGATCCAACAAA
TTAAGGCTCCCAAAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTTT
TCAGCAGGTACCCAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCAT
TGGAGAAGGGTCgtccaaaataaaaaacattcaaaaactttttaatacTG
CTTCAAAGATGGCATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTAT
CTTGGAGGTGAACCGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042407-exon-sc0003401-1491911889:4944..4999 | TCONS_00042407-exon-sc0003401-1491911889:4944..4999 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1510915933:4944..4999 | TCONS_00042407-exon-sc0003401-1510915933:4944..4999 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1575043694:4944..4999 | TCONS_00042407-exon-sc0003401-1575043694:4944..4999 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1491911889:11636..11717 | TCONS_00042407-exon-sc0003401-1491911889:11636..11717 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1510915933:11636..11717 | TCONS_00042407-exon-sc0003401-1510915933:11636..11717 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1575043694:11636..11717 | TCONS_00042407-exon-sc0003401-1575043694:11636..11717 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1491911889:11797..12115 | TCONS_00042407-exon-sc0003401-1491911889:11797..12115 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1510915933:11797..12115 | TCONS_00042407-exon-sc0003401-1510915933:11797..12115 | Clytia hemisphaerica | exon |
| TCONS_00042407-exon-sc0003401-1575043694:11797..12115 | TCONS_00042407-exon-sc0003401-1575043694:11797..12115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003401 | supercontig | sc0003401:4944..12115 + |
Blast
The following BLAST results are available for this feature:
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