TCONS_00042403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042403
Unique NameTCONS_00042403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042403 ID=TCONS_00042403|Name=TCONS_00042403|organism=Clytia hemisphaerica|type=transcript|length=560bp
TTCAGTAGCAATGTTTTCAAGGACCAGAAACTTGTGACTTATTAAAATGT
TACGTCCGATTCCAAGTTCCAGGTTTATGAATCCTTTCGTAGAAGTGTCG
TGCCCGATGCACTCATCAatgtgattttcgattttccatCAATACTCCTT
TTAAGTTTTTTCATCATATTAATACTGATGATAGAGACCAATGATCCact
gtcaatcaaaaattttatgtttaaacTTCCAACAGAAACTTCAAGCATTG
GAAGGCCTAGTCACTTTGTAGTATCCTCCTGGTGTTGATTCTTGGAAcga
caaaaatttgaaatgtgtCCATTTTTTCCGCACGTATGGTATGTGATATT
CCTGTATCGTTTGGTGCGACATTCTGCCTCTACATGTCCCTTTCTCTTGC
AGAAGGTGCAAGTCTTGCCGTTGCTGCGGTCTTTCGTTATTGAATTTAGT
GATGATTTGACATTTTTGGTGATCTTCTTTAGCTGTTCGATCTGTCTTGT
CATTGCCACTGGATCGAAGTCATTGTTGTCCATGACCTTGGAATGGGAAA
TACTTCTTCC
Run BLAST on NCBI

protein sequence of TCONS_00042403-protein

>TCONS_00042403-protein ID=TCONS_00042403-protein|Name=TCONS_00042403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
GRSISHSKVMDNNDFDPVAMTRQIEQLKKITKNVKSSLNSITKDRSNGKT
CTFCKRKGHVEAECRTKRYRNITYHTCGKNGHISNFCRSKNQHQEDTTK
Run BLAST on NCBI

transcript from alignment at sc0003398:7821..8380

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042403 ID=TCONS_00042403|Name=TCONS_00042403|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0003398:7821..8380 (Clytia hemisphaerica)
GGAAGAAGTATTTCCCATTCCAAGGTCATGGACAACAATGACTTCGATCC
AGTGGCAATGACAAGACAGATCGAACAGCTAAAGAAGATCACCAAAAATG
TCAAATCATCACTAAATTCAATAACGAAAGACCGCAGCAACGGCAAGACT
TGCACCTTCTGCAAGAGAAAGGGACATGTAGAGGCAGAATGTCGCACCAA
ACGATACAGGAATATCACATACCATACGTGCGGAAAAAATGGacacattt
caaatttttgtcgTTCCAAGAATCAACACCAGGAGGATACTACAAAGTGA
CTAGGCCTTCCAATGCTTGAAGTTTCTGTTGGAAgtttaaacataaaatt
tttgattgacagtGGATCATTGGTCTCTATCATCAGTATTAATATGATGA
AAAAACTTAAAAGGAGTATTGatggaaaatcgaaaatcacatTGATGAGT
GCATCGGGCACGACACTTCTACGAAAGGATTCATAAACCTGGAACTTGGA
ATCGGACGTAACATTTTAATAAGTCACAAGTTTCTGGTCCTTGAAAACAT
TGCTACTGAA

Coding sequence (CDS) from alignment at sc0003398:7821..8380

>TCONS_00042403 ID=TCONS_00042403|Name=TCONS_00042403|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0003398:7821..8380 (Clytia hemisphaerica)
GGAAGAAGTATTTCCCATTCCAAGGTCATGGACAACAATGACTTCGATCC
AGTGGCAATGACAAGACAGATCGAACAGCTAAAGAAGATCACCAAAAATG
TCAAATCATCACTAAATTCAATAACGAAAGACCGCAGCAACGGCAAGACT
TGCACCTTCTGCAAGAGAAAGGGACATGTAGAGGCAGAATGTCGCACCAA
ACGATACAGGAATATCACATACCATACGTGCGGAAAAAATGGacacattt
caaatttttgtcgTTCCAAGAATCAACACCAGGAGGATACTACAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026247XLOC_026247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042403-exon-sc0003398-1491911889:7821..8380TCONS_00042403-exon-sc0003398-1491911889:7821..8380Clytia hemisphaericaexon
TCONS_00042403-exon-sc0003398-1510915933:7821..8380TCONS_00042403-exon-sc0003398-1510915933:7821..8380Clytia hemisphaericaexon
TCONS_00042403-exon-sc0003398-1575043694:7821..8380TCONS_00042403-exon-sc0003398-1575043694:7821..8380Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042403-proteinTCONS_00042403-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003398supercontigsc0003398:7821..8380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186848	0.0985652	1.4052	0.699266	1.11624	0.6727	2.0444	2.03376	0.876641	0.440046	2.91412	1.7629	2.85208	2.16363	0.482976	3.11101	0.388306	0.48932	0.214892	0.224869	0.610337	1.0214	0.463568	0.234083	1.54748	6.52655	0	0.295826	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top