TCONS_00042403-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042403-protein
Unique NameTCONS_00042403-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length99

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042403-protein ID=TCONS_00042403-protein|Name=TCONS_00042403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
GRSISHSKVMDNNDFDPVAMTRQIEQLKKITKNVKSSLNSITKDRSNGKT
CTFCKRKGHVEAECRTKRYRNITYHTCGKNGHISNFCRSKNQHQEDTTK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026247XLOC_026247Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042403TCONS_00042403Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 50..66
e-value: 0.1
score: 17.3
coord: 75..89
e-value: 2.2
score: 9.2
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 21..59
e-value: 0.0039
score: 16.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 60..93
e-value: 7.1E-7
score: 28.6
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 44..91

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042403-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top