TCONS_00042328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042328
Unique NameTCONS_00042328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042328 ID=TCONS_00042328|Name=TCONS_00042328|organism=Clytia hemisphaerica|type=transcript|length=1238bp
TAGAgatcttaaaatgaaaaaaacaactttaaatCCCAATTAAATCAGGA
GAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGTT
ATATTATGGATTCTGAAACTATTCAAGCTCTTCAGAATGAAGCAATCAGC
CAATCAATACTTCTCTCGAAATGCTTGGAGGCTGCCTCTTTGGATATGCT
CtatcaaaaaataataagtgacAGCATCACTGATCTCCAATCTCAGACCC
CTCCACTTATACTATGTGAAAGGAAATTGCTGACTTTATCTAGTCATGTT
GGGTGTACGGATGGTATTCTGTATGCAATGCCTTTGATAGCAGAAATTAA
TGGTGAAAGACATTTATACATTAGGTGTTTTGAGTCGGGTGTGTACAAAG
GCTACTTTGATCAAACTGAAATGTTTGGTGAACTCATGGATCAGTATGAA
ATCACCAAGAAGTTTGTCATCAGGATATACACAGAGTGGGATGTTCTTGC
TGTTTATCACACTGAACGAAACAAACATAAAAAGgGGACTAAGCATTCAA
CAACATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACC
ATTAAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACC
tggttttgtattttattgccGTAGAGACATGTCTCATACAAATCGAAATA
CTGATCCCAAAGATAACCAATTTTACTTGATTGAGGGTCTTGGTGCATCC
GAACTCTGGTTTAGAAACTTTCAAGATTATGGAACCGAACATCCAAACGA
CCCATATCCAACCGTTCTTGAACAGTTCAaaggaaaagaagaactttCAC
TGATCGAGCAATTCCAAGTTTTATCCCATGTCCCGAATCTTCATTCTTGG
GCTTCTGAATCAAAAAGTGGAACGAAAAAACAAcaatattttgcttcaaa
tgGTTACTCCCCTCGAGATATCATCTTACGTGCTCTAGATGACATTCATT
CTGACATGGAAGAAAAAGTCTCATCTATAACACCTATCTACTCGCTGATT
TTATCCAAACAATACCATGTCCCGAAAGTGTCTATCCACAAACAAAATaa
aCGGCGTACTTGCAATCAAACTCACCGGCGAAAAGTATTGGACAAGACGG
CTTTGCTAGAGCATCTTGACCACCCTAATTTTGTTCAACCTGTATATGAA
AAGTTGGATGTTTACCCAAATTTTCGATACAATATTTT
Run BLAST on NCBI

transcript from alignment at sc0003345:4593..7115-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042328 ID=TCONS_00042328|Name=TCONS_00042328|organism=Clytia hemisphaerica|type=transcript|length=2523bp|location=Sequence derived from alignment at sc0003345:4593..7115- (Clytia hemisphaerica)
TAGAGATCTTAAAATGAAAAAAACAACTTTAAATCCCAATTAAATCAGGA
GAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGTT
ATATTATGGATTCTGAAACTATTCAAGGTACAATCTTTTTTTATTTTATT
TTCAATACGAAAAATATTAATATATCACACAGAATAGAATTATATGTTAT
AAGGAACAAAACTGAACCAATACATGTGACTAATGACATAACAATTGACA
TACATAAACCTCTCAATTTTTTTACAGATTGAATTGGTTGGAAACTTCGA
TTGAACATTTTGGTTTATGCCAGGGAGTCTTTTTTCCATTTAAATAAATT
TCAAATTATCGTTAGCGCTATTACTGTGCTCATCTTGTATACTGTATTAA
AAGAATATTATTAAGGTTTGATTCAATTATGGCGTTAACTGTGACAAACA
AATGAGAACATGACAAATACATATACCAAATAAAAACATAGACCAAATCT
TATTTTTGTTTAAAAGAGACAATGTGACAGAAACAGAACACCTTTCAATA
ATAAGAATTATGTTTGTACTTGTGTTGTTTCTTTTTAAAAATTGATTTAG
AAAATGGTGATTTTTGAAATTTCTGTTAATTTTTAGTATCACAGCCCATC
AACTCACATATATTTATGTTATTTTGTATTTATGTTATATAATCTTCATT
TTCATTCCAGCTCTTCAGAATGAAGCAATCAGCCAATCAATACTTCTCTC
GAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCTATCAAAAAATAATAA
GTGACAGCATCACTGATCTCCAATCTCAGACCCCTCCACTTATACTATGT
GAAAGGAAATTGCTGACTTTATCTAGTCATGTTGGGTGTACGGATGGTAT
TCTGTATGCAATGCCTTTGATAGCAGAAATTAATGGTGAAAGACATTTAT
ACATTAGGTAAAGAATTTGGCTTCTACTTTAAGTGTTCGCTCTAGGAATT
ATTTCAATCTCTCTTTTCCCATGACACTTTGTATCAACAACTGCTTAAAA
TCGAAATGTTTTATTTTTTAAACTTATTGATTTTATTTGTTTGCATTAAA
TTTCAGGTGTTTTGAGTCGGGTGTGTACAAAGGCTACTTTGATCAAACTG
AAATGTTTGGTGAACTCATGGATCAGTATGAAATCACCAAGAAGTTTGTC
ATCAGGATATACACAGAGTGGGATGTTCTTGCTGTTTATCACACTGAACG
AAACAAACATAAAAAGGGTAAATAATTTTGAAATTTAGTCTTTTTTACCA
ATAGTTGTATTTTTGTTATTACTGAACTGAATTTTTGAAATTGTTGCCCA
AACTATATTCTATTATATACTTTTTTATTCAGGGACTAAGCATTCAACAA
CATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACCATT
AAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCTGG
TTTTGTATTTTATTGCCGTAGAGACATGTCTCATACAAATCGAAATACTG
ATCCCAAAGATAACCAGTAAGATAATACTTTTCTTTGGTTCTCTACTGTC
TTTTCTATTTGAAGAGAGTATTTTTAGAAACTAAGATTATGTACAAATTC
GCCTCTGTGAAATATTCCACTTTTACATTACAGCTGTTCTTCGAACTCGA
ACTCGGAAATCTAATTTGTTGAATTACAGAGAGTTTTTTAAGAGACCTAG
AAAATTCAATAGTATCAGGGATAGAAAGAATTAGGGAAAGTCTAGTTCGC
TAAAAGAAATTTTATTTTATTTCTTATTTTTCACAGATTTTACTTGATTG
AGGGTCTTGGTGCATCCGAACTCTGGTTTAGAAACTTTCAAGATTATGGA
ACCGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTCAAAGG
AAAAGAAGAACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCATGTCC
CGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAACAA
CAATATTTTGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTACGTGC
TCTAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTATAACAC
CTATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAGTGTCT
ATCCACAAACAAAATGTAAGTGTTAAACTTTTCACGTTATATGATTGATA
AGATCCATTCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATTTATAT
AATTACTACAAATAAGAAATGAAATTATGATGATTTTTTCCGATAAATTA
TTAATCTCGATATCCTAAATATTTTAAATTTAGAAACGGCGTACTTGCAA
TCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCATC
TTGACCACCCTAATTTTGTTCAACCTGTATATGAAAAGTTGGATGTTTAC
CCAAATTTTCGATACAATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026176XLOC_026176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042328-exon-sc0003345-1575043694:6989..7115TCONS_00042328-exon-sc0003345-1575043694:6989..7115Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1575043694:6159..6405TCONS_00042328-exon-sc0003345-1575043694:6159..6405Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1575043694:5849..6009TCONS_00042328-exon-sc0003345-1575043694:5849..6009Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1575043694:5550..5733TCONS_00042328-exon-sc0003345-1575043694:5550..5733Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1575043694:4901..5279TCONS_00042328-exon-sc0003345-1575043694:4901..5279Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1575043694:4593..4732TCONS_00042328-exon-sc0003345-1575043694:4593..4732Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:6989..7115TCONS_00042328-exon-sc0003345-1510915933:6989..7115Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:6159..6405TCONS_00042328-exon-sc0003345-1510915933:6159..6405Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:5849..6009TCONS_00042328-exon-sc0003345-1510915933:5849..6009Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:5550..5733TCONS_00042328-exon-sc0003345-1510915933:5550..5733Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:4901..5279TCONS_00042328-exon-sc0003345-1510915933:4901..5279Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1510915933:4593..4732TCONS_00042328-exon-sc0003345-1510915933:4593..4732Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:6989..7115TCONS_00042328-exon-sc0003345-1491911889:6989..7115Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:6159..6405TCONS_00042328-exon-sc0003345-1491911889:6159..6405Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:5849..6009TCONS_00042328-exon-sc0003345-1491911889:5849..6009Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:5550..5733TCONS_00042328-exon-sc0003345-1491911889:5550..5733Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:4901..5279TCONS_00042328-exon-sc0003345-1491911889:4901..5279Clytia hemisphaericaexon
TCONS_00042328-exon-sc0003345-1491911889:4593..4732TCONS_00042328-exon-sc0003345-1491911889:4593..4732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:4593..7115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769494	0	0	0	2.14265	2.57274	3.16835	1.61848	2.53513	1.95708	1.13335	4.81427	2.9558	4.08829	0.705313	5.34672e-08	2.77713	1.8577	1.69851	0.2063	0.230421	2.63764e-06	1.3936e-07	1.31718e-06	7.23185	7.35608	0.00472995	0	0.276411	0.000596468
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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