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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042176 ID=TCONS_00042176|Name=TCONS_00042176|organism=Clytia hemisphaerica|type=transcript|length=1035bpRun BLAST on NCBI protein sequence of TCONS_00042176-protein >TCONS_00042176-protein ID=TCONS_00042176-protein|Name=TCONS_00042176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp CGKCFTQQNSLNAHLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKRun BLAST on NCBI transcript from alignment at sc0003258:11899..12933 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042176 ID=TCONS_00042176|Name=TCONS_00042176|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at sc0003258:11899..12933 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003258:11899..12933 >TCONS_00042176 ID=TCONS_00042176|Name=TCONS_00042176|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0003258:11899..12933 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042176 vs. Swiss-Prot (Human)
Match: ZN501 (Zinc finger protein 501 OS=Homo sapiens GN=ZNF501 PE=2 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 2.455e-58 Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 2
Query: 2 CGKCFTQQNSLNAHLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKSFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGEKAFKCQECGKCFSERGNLYRHMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 565
CGK FTQ++SL H +IH GE+P+ C +CG CF +QSNL H++IH+ K +KC EC K+F++K +L HLR HTGE +C ECGK F LIKH RIHTGEKP+KC ECGK F L +H+ +G+K FKC ECGK F++ L +H + S KP+ C +CGK F+Q +L+ H H G
Sbjct: 27 CGKFFTQRSSLTQHQRIHRGEKPYVCSECGSCFRKQSNLTQHLRIHTGEKPYKCNECEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTGEKPYKCTECGKAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSGEKPYTCTECGKAFTQNSSLVEHERTHTG 214 HSP 2 Score: 170.244 bits (430), Expect = 1.039e-49 Identity = 84/188 (44.68%), Postives = 113/188 (60.11%), Query Frame = 2
Query: 2 CGKCFTQQNSLNAHLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKSFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGEKAFKCQECGKCFSERGNLYRHMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 565
C K F + L HL+IHTGE+P+KC +CGK F + +L H +IH+ K +KC ECGK+F L H R H+G+ +C ECGK F L++H RIH+GEKP+ C ECGK F S L++HE TGEK +KC EC K F ++ +L H + + KP+ C CGK F L+RH +H G
Sbjct: 83 CEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTGEKPYKCTECGKAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSGEKPYTCTECGKAFTQNSSLVEHERTHTGEKLYKCSECEKTFRKQAHLSEHYRIHTGEKPYECVGCGKSFRHSSALLRHQRLHAG 270 HSP 3 Score: 165.622 bits (418), Expect = 5.708e-48 Identity = 86/175 (49.14%), Postives = 113/175 (64.57%), Query Frame = 2
Query: 41 HLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKSFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGEKAFKCQECGKCFSERGNLYRHMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 565
H +++ ++P KC +CGK FT++S+L H +IH K + C ECG FR + L HLR HTGE +C EC K F+TK L++H RIHTGEKP+KC ECGK F L+KH+ I TGEK +KC ECGK FS+ L RH S KPF C +CGK F+Q L++H +H+G
Sbjct: 12 HGRVNMQKKPSKCSECGKFFTQRSSLTQHQRIHRGEKPYVCSECGSCFRKQSNLTQHLRIHTGEKPYKCNECEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTGEKPYKCTECGKAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSG 186 HSP 4 Score: 165.622 bits (418), Expect = 5.952e-48 Identity = 83/188 (44.15%), Postives = 117/188 (62.23%), Query Frame = 2
Query: 2 CGKCFTQQNSLNAHLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKSFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGEKAFKCQECGKCFSERGNLYRHMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 565
CG CF +Q++L HL+IHTGE+P+KC +C K F ++ L H++IH+ K +KC ECGK+F L H R HTGE +C ECGK F L +H R H+G+KPFKC ECGK F + LM+H+ I +GEK + C ECGK F++ +L H + K + C++C K F ++ +L H +H G
Sbjct: 55 CGSCFRKQSNLTQHLRIHTGEKPYKCNECEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTGEKPYKCTECGKAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSGEKPYTCTECGKAFTQNSSLVEHERTHTGEKLYKCSECEKTFRKQAHLSEHYRIHTG 242 HSP 5 Score: 125.561 bits (314), Expect = 4.516e-33 Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 2
Query: 2 CGKCFTQQNSLNAHLKIHTGERPFKCQDCGKCFTRQSNLNVHVKIHSDIKSFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGE 400
CGK F+Q L H + H+G++PFKC +CGK F + + L H +IHS K + C ECGK+F L H R HTGE L +C EC K F+ + +L +H RIHTGEKP++C CGK F+ S L++H+ + GE
Sbjct: 139 CGKAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSGEKPYTCTECGKAFTQNSSLVEHERTHTGEKLYKCSECEKTFRKQAHLSEHYRIHTGEKPYECVGCGKSFRHSSALLRHQRLHAGE 271 HSP 6 Score: 107.457 bits (267), Expect = 1.544e-27 Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2
Query: 197 LLKNHLREHTGEPLSRCQECGKYFKTKNYLIKHNRIHTGEKPFKC*ECGKYFKTKSDLMKHEIIRTGEKAFKCQECGKCFSERGNLYRHMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 565
L H R + + S+C ECGK+F ++ L +H RIH GEKP+ C ECG F+ +S+L +H I TGEK +KC EC K F + L +H+ + + KP+ C +CGK F Q +LI+H +H G
Sbjct: 8 LRMKHGRVNMQKKPSKCSECGKFFTQRSSLTQHQRIHRGEKPYVCSECGSCFRKQSNLTQHLRIHTGEKPYKCNECEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTG 130 HSP 7 Score: 33.8834 bits (76), Expect = 1.544e-27 Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 3
Query: 615 HMYLQSEIKPFNCAKCGKQFSQRGNLIRHSNMHNG 719
H S KPF C +CGK F+Q L++H +H+G
Sbjct: 152 HQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSG 186 The following BLAST results are available for this feature:
BLAST of TCONS_00042176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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