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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042057 ID=TCONS_00042057|Name=TCONS_00042057|organism=Clytia hemisphaerica|type=transcript|length=2147bp
cTTTTGAGTATAACTACTTGTGATATAAAGCTATAAATAGTATAAAAATA
CAGATAAAtatcaagaaaaaacaaaactacTCACTATGTACAtgataaaa
acacaaaattatACAAAACTATTTTactaaaacatataaaaaatttcttt
tttgaaacaaaaaaattatatattgaTTGCCTGAATGAGGTAAAATGTCA
ATGGTTGTATCCAATAAATCATTAAATTGTATTGTGATTTTTGTAATTGG
GTGTATGTAAACAAGAATGCTAAAAAGCTTTTAAGGTCAAATGTGACAAA
GATATATAAACCAATGACAACTACTGTTACAGTCATAGCAAAATAAGACA
GTAAACTTTTCATCTAGAATcaactaaaaatgaaatcaaattttgaatga
aagtgaccgtttatttaaaaaaatttctccttTTCAGGGGTCTCCCATCC
AACCAAAACGAAGCATTCAGAAAGGCTTACGGTGAAATTGGAAACTTACG
TGCCATGTATAGCAAGAAATTCATGTGCCTTACTGCAAcagcaaataaaa
aaacaacaagaaaaataGTCCAACTATTACATCTGAGAAACCACAAGATC
ACAAGATTATCTCCAGAAAAACCAAATGTGAAAATCTCGGTCAAAAAACT
GAAGCAAGGGACTGACTTTCAAGAAATCATAGACCATATGAGACCAATGG
TTGAAGATTTAAACCAAAAGGGCAGTTGCCAAAAAACAATCATCTACTGC
AACAGCATAGCACTTTGTGGCAAAGTTTTCCTTCTTTTTGACAGAAGATA
CCGCGGGAAAGCTGTAGGCATGTTTCATGGTCATACACCTCAAGAATTGA
AAGAGATTGTCATGACggaattttccaaaaacaacGGAAAATGTTTTATC
GTGGTAGCTACTTCAGCCCTTGGCATGGGTGTCAATATCAGAAATGTAAG
ACATGTCATCCATGTTGGATTACCTAGCGATGTGGAAGCTTATATCCAAG
AGCTTGGAAGAGCCGGTAGAGATGGTGATCAAAGTAGTGCTTTTTTGTTT
TATCGCCCTTGTGATATCGCTCACAATGCGGATGAAGAATTGGTAAGGAT
CATTAAGAACAAAGAGGAAAAATGTCGTCGAGTTGCCTTGCTTAAGTGTT
TCAATGAAGTACCAGATAATGATTTTGATAATGAAAAGCATAAGTGTTGT
GATGAATGTGAAAAGATGTGCAAGTGTGATGAATGTGCTGTACCTAAAGA
AGAAATTACTCCCCCAAAATTGAAAAGTGTTAGATCAGCAGATGACGAAG
AGAAAGAAACGATTTTGGCTTGTCTTGTTTCTCTTACTTTAAGTAATGAA
TATGTGGAATTGGTCATGGAGAATGTCAACTGTATTCAAACCGAAACTGA
TCTTTTGACCTTAGGCCTTGATGAATCTGTCAGCATGTTTGTGAGCCTGG
TATTTAAAGAAGTGTTCTACATAGACAATTTGAAAGTACTGCCAATTGAT
GACACAAAGAAAGATGATATTGACATACTATCAATGAAACAGCCGTACAA
GGAAAAATCAAATGATGAAATTGATTTCGACTCTGACAATGAAATCTTTT
GGCAGGACTTTTTTTGATGTCTAAACTGCAACatgttttataaaaactag
tacCTACATTAGAATCAAAACAGTTTTCATGCAAAAACCAAGGACTTTTT
ACCAGATGTCTGACCAAATCAAAGTTTGTATCATTCTCCAGGGCCAATTA
AATTAACACTAGTTGTCAGACTAATGAGTTATCAATAATCTGTTTCTGGG
TCATAGGAAAAGTCATGGTTGTGCCACTTGTTTGTAAGGCGTTTCATCCA
TTTCACCAGTGAAACTTTGttcattttgttgaaaatgtcattgttaaatt
ttttgaaagtctcaAGTTTTCTGCCTGgtgttttgtgaaaatttttgctG
TTGTGGTGAATCTCTTTGAAAAGAGTGCTGAACATTTCATGTGCGTATTT
ATTTGAGTGGTGATTTGACTTATTATTGGTTCCAGCCTCATGGAGGGTCG
ACTCAACCAATTCCTCCATCCCTCCAATTGCCTTTGAAATGTCTTCAACA
CTTTTGTCAGTGAGGTTTTGCATACCTTGTGATTTGATCAACGCTTT Run BLAST on NCBI protein sequence of TCONS_00042057-protein >TCONS_00042057-protein ID=TCONS_00042057-protein|Name=TCONS_00042057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MKVTVYLKKFLLFRGLPSNQNEAFRKAYGEIGNLRAMYSKKFMCLTATAN
KKTTRKIVQLLHLRNHKITRLSPEKPNVKISVKKLKQGTDFQEIIDHMRP
MVEDLNQKGSCQKTIIYCNSIALCGKVFLLFDRRYRGKAVGMFHGHTPQE
LKEIVMTEFSKNNGKCFIVVATSALGMGVNIRNVRHVIHVGLPSDVEAYI
QELGRAGRDGDQSSAFLFYRPCDIAHNADEELVRIIKNKEEKCRRVALLK
CFNEVPDNDFDNEKHKCCDECEKMCKCDECAVPKEEITPPKLKSVRSADD
EEKETILACLVSLTLSNEYVELVMENVNCIQTETDLLTLGLDESVSMFVS
LVFKEVFYIDNLKVLPIDDTKKDDIDILSMKQPYKEKSNDEIDFDSDNEI
FWQDFF Run BLAST on NCBI transcript from alignment at sc0003171:20332..22478 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042057 ID=TCONS_00042057|Name=TCONS_00042057|organism=Clytia hemisphaerica|type=transcript|length=2147bp|location=Sequence derived from alignment at sc0003171:20332..22478 (Clytia hemisphaerica)
AAAGCGTTGATCAAATCACAAGGTATGCAAAACCTCACTGACAAAAGTGT
TGAAGACATTTCAAAGGCAATTGGAGGGATGGAGGAATTGGTTGAGTCGA
CCCTCCATGAGGCTGGAACCAATAATAAGTCAAATCACCACTCAAATAAA
TACGCACATGAAATGTTCAGCACTCTTTTCAAAGAGATTCACCACAACag
caaaaattttcacaaaacacCAGGCAGAAAACTtgagactttcaaaaaat
ttaacaatgacattttcaacaaaatgaaCAAAGTTTCACTGGTGAAATGG
ATGAAACGCCTTACAAACAAGTGGCACAACCATGACTTTTCCTATGACCC
AGAAACAGATTATTGATAACTCATTAGTCTGACAACTAGTGTTAATTTAA
TTGGCCCTGGAGAATGATACAAACTTTGATTTGGTCAGACATCTGGTAAA
AAGTCCTTGGTTTTTGCATGAAAACTGTTTTGATTCTAATGTAGgtacta
gtttttataaaacatGTTGCAGTTTAGACATCAAAAAAAGTCCTGCCAAA
AGATTTCATTGTCAGAGTCGAAATCAATTTCATCATTTGATTTTTCCTTG
TACGGCTGTTTCATTGATAGTATGTCAATATCATCTTTCTTTGTGTCATC
AATTGGCAGTACTTTCAAATTGTCTATGTAGAACACTTCTTTAAATACCA
GGCTCACAAACATGCTGACAGATTCATCAAGGCCTAAGGTCAAAAGATCA
GTTTCGGTTTGAATACAGTTGACATTCTCCATGACCAATTCCACATATTC
ATTACTTAAAGTAAGAGAAACAAGACAAGCCAAAATCGTTTCTTTCTCTT
CGTCATCTGCTGATCTAACACTTTTCAATTTTGGGGGAGTAATTTCTTCT
TTAGGTACAGCACATTCATCACACTTGCACATCTTTTCACATTCATCACA
ACACTTATGCTTTTCATTATCAAAATCATTATCTGGTACTTCATTGAAAC
ACTTAAGCAAGGCAACTCGACGACATTTTTCCTCTTTGTTCTTAATGATC
CTTACCAATTCTTCATCCGCATTGTGAGCGATATCACAAGGGCGATAAAA
CAAAAAAGCACTACTTTGATCACCATCTCTACCGGCTCTTCCAAGCTCTT
GGATATAAGCTTCCACATCGCTAGGTAATCCAACATGGATGACATGTCTT
ACATTTCTGATATTGACACCCATGCCAAGGGCTGAAGTAGCTACCACGAT
AAAACATTTTCCgttgtttttggaaaattccGTCATGACAATCTCTTTCA
ATTCTTGAGGTGTATGACCATGAAACATGCCTACAGCTTTCCCGCGGTAT
CTTCTGTCAAAAAGAAGGAAAACTTTGCCACAAAGTGCTATGCTGTTGCA
GTAGATGATTGTTTTTTGGCAACTGCCCTTTTGGTTTAAATCTTCAACCA
TTGGTCTCATATGGTCTATGATTTCTTGAAAGTCAGTCCCTTGCTTCAGT
TTTTTGACCGAGATTTTCACATTTGGTTTTTCTGGAGATAATCTTGTGAT
CTTGTGGTTTCTCAGATGTAATAGTTGGACtatttttcttgttgtttttt
tatttgctgTTGCAGTAAGGCACATGAATTTCTTGCTATACATGGCACGT
AAGTTTCCAATTTCACCGTAAGCCTTTCTGAATGCTTCGTTTTGGTTGGA
TGGGAGACCCCTGAAaaggagaaatttttttaaataaacggtcactttca
ttcaaaatttgatttcatttttagttgATTCTAGATGAAAAGTTTACTGT
CTTATTTTGCTATGACTGTAACAGTAGTTGTCATTGGTTTATATATCTTT
GTCACATTTGACCTTAAAAGCTTTTTAGCATTCTTGTTTACATACACCCA
ATTACAAAAATCACAATACAATTTAATGATTTATTGGATACAACCATTGA
CATTTTACCTCATTCAGGCAAtcaatatataatttttttgtttcaaaaaa
gaaattttttatatgttttagtAAAATAGTTTTGTataattttgtgtttt
tatcaTGTACATAGTGAgtagttttgttttttcttgataTTTATCTGTAT
TTTTATACTATTTATAGCTTTATATCACAAGTAGTTATACTCAAAAg Coding sequence (CDS) from alignment at sc0003171:20332..22478 >TCONS_00042057 ID=TCONS_00042057|Name=TCONS_00042057|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0003171:20332..22478 (Clytia hemisphaerica)
TCAAAAAAAGTCCTGCCAAAAGATTTCATTGTCAGAGTCGAAATCAATTT
CATCATTTGATTTTTCCTTGTACGGCTGTTTCATTGATAGTATGTCAATA
TCATCTTTCTTTGTGTCATCAATTGGCAGTACTTTCAAATTGTCTATGTA
GAACACTTCTTTAAATACCAGGCTCACAAACATGCTGACAGATTCATCAA
GGCCTAAGGTCAAAAGATCAGTTTCGGTTTGAATACAGTTGACATTCTCC
ATGACCAATTCCACATATTCATTACTTAAAGTAAGAGAAACAAGACAAGC
CAAAATCGTTTCTTTCTCTTCGTCATCTGCTGATCTAACACTTTTCAATT
TTGGGGGAGTAATTTCTTCTTTAGGTACAGCACATTCATCACACTTGCAC
ATCTTTTCACATTCATCACAACACTTATGCTTTTCATTATCAAAATCATT
ATCTGGTACTTCATTGAAACACTTAAGCAAGGCAACTCGACGACATTTTT
CCTCTTTGTTCTTAATGATCCTTACCAATTCTTCATCCGCATTGTGAGCG
ATATCACAAGGGCGATAAAACAAAAAAGCACTACTTTGATCACCATCTCT
ACCGGCTCTTCCAAGCTCTTGGATATAAGCTTCCACATCGCTAGGTAATC
CAACATGGATGACATGTCTTACATTTCTGATATTGACACCCATGCCAAGG
GCTGAAGTAGCTACCACGATAAAACATTTTCCgttgtttttggaaaattc
cGTCATGACAATCTCTTTCAATTCTTGAGGTGTATGACCATGAAACATGC
CTACAGCTTTCCCGCGGTATCTTCTGTCAAAAAGAAGGAAAACTTTGCCA
CAAAGTGCTATGCTGTTGCAGTAGATGATTGTTTTTTGGCAACTGCCCTT
TTGGTTTAAATCTTCAACCATTGGTCTCATATGGTCTATGATTTCTTGAA
AGTCAGTCCCTTGCTTCAGTTTTTTGACCGAGATTTTCACATTTGGTTTT
TCTGGAGATAATCTTGTGATCTTGTGGTTTCTCAGATGTAATAGTTGGAC
tatttttcttgttgtttttttatttgctgTTGCAGTAAGGCACATGAATT
TCTTGCTATACATGGCACGTAAGTTTCCAATTTCACCGTAAGCCTTTCTG
AATGCTTCGTTTTGGTTGGATGGGAGACCCCTGAAaaggagaaatttttt
taaataaacggtcactttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042057-exon-sc0003171-1491911889:20332..22478 | TCONS_00042057-exon-sc0003171-1491911889:20332..22478 | Clytia hemisphaerica | exon |
| TCONS_00042057-exon-sc0003171-1510915933:20332..22478 | TCONS_00042057-exon-sc0003171-1510915933:20332..22478 | Clytia hemisphaerica | exon |
| TCONS_00042057-exon-sc0003171-1575043694:20332..22478 | TCONS_00042057-exon-sc0003171-1575043694:20332..22478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003171 | supercontig | sc0003171:20332..22478 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00042057 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 8.779e-26 Identity = 74/233 (31.76%), Postives = 126/233 (54.08%), Query Frame = 1
Query: 448 SNQNEAFRKAYGEIGNLR-AMYSKKFMCLTATANKKTTRKIVQLLHLRNHKITRLSPEKPNVKISVKKLKQGTDFQEIIDHMRPMVEDLNQKGSCQKTIIYCNSIALCGKVFLLFDRRYRGKAVGMFHGHTPQELKEIVMTEFSKNNGKCFIVVATSALGMGVNIRNVRHVIHVGLPSDVEAYIQELGRAGRDGDQSSAFLFYRPCDIAHNADEELVRIIKNKEEKCRRVALL 1143
S FR ++ ++G+L+ A+ + LTATA+ IV+ L+LRN +IT ++PN+ + V++ K G Q++ + +G TIIYC S + +V + R + G +H ++ + F ++ +C V+AT A GMG+N ++R VIH G P D+E+Y QE+GRAGRDG QSS + + P DI N + L+ I+N++ + ++ ++
Sbjct: 674 SEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEGP---TIIYCPSRKMTQQV--TGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQC--VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI--NLNRHLLTEIRNEKFRLYKLKMM 896
The following BLAST results are available for this feature:
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